Wall clock time and date at job start Tue Mar 31 2020 06:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00180 * 2 1 4 4 H 1.48500 * 109.46903 * 269.99910 * 3 2 1 5 5 H 1.48500 * 109.47148 * 30.00066 * 3 2 1 6 6 H 1.48498 * 109.47223 * 150.00022 * 3 2 1 7 7 C 1.37879 * 120.00142 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99891 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00073 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47062 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00289 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00336 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00778 * 179.97438 * 13 11 10 15 15 C 1.50692 * 109.47762 * 180.02562 * 14 13 11 16 16 C 1.36126 * 120.17475 * 259.72578 * 15 14 13 17 17 C 1.39326 * 120.99691 * 180.32288 * 16 15 14 18 18 C 1.36133 * 120.98585 * 359.92630 * 17 16 15 19 19 C 1.40506 * 119.64915 * 0.04221 * 18 17 16 20 20 C 1.40545 * 121.27499 * 180.02562 * 19 18 17 21 21 C 1.36087 * 119.64756 * 179.97438 * 20 19 18 22 22 C 1.39378 * 120.99501 * 0.02562 * 21 20 19 23 23 C 1.36094 * 120.99655 * 359.95499 * 22 21 20 24 24 C 1.40505 * 120.17411 * 79.99875 * 15 14 13 25 25 H 0.96996 * 120.00119 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47598 * 59.99667 * 9 7 2 27 27 H 1.08992 * 109.46930 * 299.98968 * 9 7 2 28 28 H 1.09000 * 109.47683 * 59.99448 * 10 9 7 29 29 H 1.09004 * 109.46866 * 299.99551 * 10 9 7 30 30 H 0.97006 * 119.99667 * 0.02562 * 13 11 10 31 31 H 1.09000 * 109.46778 * 59.99807 * 14 13 11 32 32 H 1.09000 * 109.47093 * 300.00860 * 14 13 11 33 33 H 1.08006 * 119.50105 * 0.27486 * 16 15 14 34 34 H 1.08001 * 119.51155 * 179.97438 * 17 16 15 35 35 H 1.07997 * 120.17487 * 180.02562 * 18 17 16 36 36 H 1.07997 * 120.18005 * 359.95770 * 20 19 18 37 37 H 1.08005 * 119.50597 * 179.97438 * 21 20 19 38 38 H 1.07998 * 119.50663 * 179.97438 * 22 21 20 39 39 H 1.07996 * 120.17629 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5285 -2.6366 -0.0001 12 8 6.1350 -1.5863 0.0004 13 7 6.2024 -3.8038 0.0003 14 6 7.6674 -3.8039 -0.0003 15 6 8.1697 -5.2246 -0.0003 16 6 8.5962 -5.7996 1.1575 17 6 9.0702 -7.1096 1.1760 18 6 9.1192 -7.8533 0.0368 19 6 8.6869 -7.2941 -1.1775 20 6 8.7221 -8.0311 -2.3737 21 6 8.2948 -7.4568 -3.5311 22 6 7.8219 -6.1458 -3.5499 23 6 7.7728 -5.4020 -2.4112 24 6 8.2057 -5.9610 -1.1964 25 1 -0.4850 0.8400 0.0004 26 1 3.8746 -0.6808 0.8905 27 1 3.8751 -0.6798 -0.8895 28 1 3.6584 -3.1503 -0.8902 29 1 3.6578 -3.1506 0.8897 30 1 5.7173 -4.6439 0.0002 31 1 8.0311 -3.2895 0.8892 32 1 8.0304 -3.2905 -0.8907 33 1 8.5674 -5.2314 2.0756 34 1 9.4029 -7.5419 2.1081 35 1 9.4887 -8.8677 0.0662 36 1 9.0866 -9.0477 -2.3745 37 1 8.3232 -8.0251 -4.4491 38 1 7.4890 -5.7137 -4.4820 39 1 7.4036 -4.3876 -2.4409 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292721068.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:17 Heat of formation + Delta-G solvation = -28.650455 kcal Electronic energy + Delta-G solvation = -20682.377095 eV Core-core repulsion = 17553.057766 eV Total energy + Delta-G solvation = -3129.319329 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.56856 -40.53508 -37.62068 -36.17356 -35.51989 -33.69073 -33.13058 -31.22195 -30.61895 -28.53121 -26.61959 -24.21718 -23.90107 -23.15877 -21.77386 -21.18914 -19.24460 -18.43646 -18.05708 -17.54526 -17.23452 -16.77554 -16.58874 -16.23130 -15.53579 -15.12427 -14.87231 -14.77431 -14.59815 -14.42224 -14.34339 -14.06505 -13.60858 -13.41187 -13.32427 -12.88418 -12.76521 -12.27787 -12.11587 -11.97311 -11.85173 -11.77511 -11.67675 -11.40743 -11.06043 -10.78462 -10.67513 -10.12925 -9.54878 -8.82937 -8.31764 -6.34802 -0.45983 0.07879 1.02031 1.33357 1.35113 1.50450 1.66483 2.02041 2.34969 2.39269 3.03878 3.19657 3.49273 3.80015 3.90681 3.97736 4.01524 4.14006 4.28529 4.34240 4.38412 4.45526 4.48071 4.53457 4.63401 4.67852 4.86038 4.98984 5.03226 5.22107 5.26591 5.30482 5.34845 5.42380 5.44287 5.50715 5.60766 5.62285 5.70550 5.89795 6.09025 6.23160 6.53906 6.71524 7.26403 7.30591 8.84000 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.026242 B = 0.003211 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.727618 B = 8716.914729 C = 9144.303599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.013 3.987 3 Si 0.939 3.061 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.530 4.530 8 H 0.049 0.951 9 C 0.006 3.994 10 C -0.117 4.117 11 C 0.517 3.483 12 O -0.584 6.584 13 N -0.714 5.714 14 C 0.163 3.837 15 C -0.107 4.107 16 C -0.094 4.094 17 C -0.124 4.124 18 C -0.097 4.097 19 C -0.074 4.074 20 C -0.106 4.106 21 C -0.124 4.124 22 C -0.118 4.118 23 C -0.128 4.128 24 C -0.053 4.053 25 H 0.267 0.733 26 H 0.011 0.989 27 H 0.009 0.991 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.412 0.588 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.136 0.864 34 H 0.151 0.849 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.147 0.853 38 H 0.134 0.866 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.547 -20.970 -2.460 30.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.185 4.185 3 Si 0.764 3.236 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.568 4.568 8 H 0.067 0.933 9 C -0.032 4.032 10 C -0.156 4.156 11 C 0.305 3.695 12 O -0.464 6.464 13 N -0.367 5.367 14 C 0.041 3.959 15 C -0.108 4.108 16 C -0.113 4.113 17 C -0.141 4.141 18 C -0.114 4.114 19 C -0.074 4.074 20 C -0.124 4.124 21 C -0.142 4.142 22 C -0.136 4.136 23 C -0.146 4.146 24 C -0.053 4.053 25 H 0.076 0.924 26 H 0.029 0.971 27 H 0.028 0.972 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.248 0.752 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.154 0.846 34 H 0.169 0.831 35 H 0.173 0.827 36 H 0.172 0.828 37 H 0.165 0.835 38 H 0.152 0.848 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 22.840 -20.106 -2.460 30.528 hybrid contribution -0.413 0.816 -0.081 0.918 sum 22.427 -19.290 -2.541 29.690 Atomic orbital electron populations 1.70022 1.07799 1.28124 1.52502 1.25814 0.95507 1.02892 0.94238 0.85815 0.79236 0.79416 0.79166 1.19346 1.20305 1.18536 1.21432 0.91262 0.93708 1.50366 0.93253 1.19216 0.93907 0.93666 0.96431 1.21498 0.89187 0.99987 1.04965 1.21181 0.90942 0.83176 0.74197 1.90642 1.71314 1.33135 1.51315 1.45993 1.06694 1.08543 1.75434 1.20088 0.80098 0.93317 1.02437 1.19592 1.02659 0.94811 0.93721 1.21085 0.96721 0.95985 0.97493 1.21160 0.99511 0.93698 0.99757 1.21431 0.97937 1.00949 0.91125 1.18408 1.00226 0.93181 0.95585 1.21376 0.99126 1.00613 0.91286 1.21192 0.98457 0.95054 0.99465 1.21175 0.98762 0.95079 0.98588 1.21171 1.00578 1.00205 0.92656 1.18098 0.99671 0.94110 0.93439 0.92354 0.97087 0.97249 0.88117 0.88012 0.75157 0.90896 0.91733 0.84618 0.83117 0.82714 0.82842 0.83539 0.84782 0.86546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.61 13.96 21.45 0.30 -59.31 16 2 C 0.01 0.79 5.47 84.66 0.46 1.25 16 3 Si 0.94 47.20 27.47 68.60 1.88 49.09 16 4 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 6 H -0.26 -13.04 6.54 99.48 0.65 -12.39 16 7 C -0.53 -30.95 9.66 25.60 0.25 -30.70 16 8 H 0.05 3.03 7.99 -2.91 -0.02 3.01 16 9 C 0.01 0.29 3.33 29.85 0.10 0.39 16 10 C -0.12 -4.50 5.64 29.85 0.17 -4.34 16 11 C 0.52 18.68 7.83 87.66 0.69 19.37 16 12 O -0.58 -26.04 15.98 -3.04 -0.05 -26.09 16 13 N -0.71 -19.08 5.55 -466.80 -2.59 -21.67 16 14 C 0.16 4.01 5.05 85.63 0.43 4.44 16 15 C -0.11 -2.21 5.25 -19.81 -0.10 -2.32 16 16 C -0.09 -1.59 9.57 22.04 0.21 -1.38 16 17 C -0.12 -1.65 9.95 22.04 0.22 -1.43 16 18 C -0.10 -1.30 9.77 22.33 0.22 -1.08 16 19 C -0.07 -1.30 5.74 -21.30 -0.12 -1.42 16 20 C -0.11 -1.51 9.77 22.33 0.22 -1.29 16 21 C -0.12 -1.80 9.95 22.04 0.22 -1.59 16 22 C -0.12 -2.12 9.95 22.05 0.22 -1.90 16 23 C -0.13 -2.76 9.29 22.33 0.21 -2.55 16 24 C -0.05 -1.11 5.74 -21.30 -0.12 -1.24 16 25 H 0.27 15.77 8.31 -92.71 -0.77 14.99 16 26 H 0.01 0.57 7.16 -2.39 -0.02 0.55 16 27 H 0.01 0.48 7.53 -2.39 -0.02 0.46 16 28 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 29 H 0.10 3.59 8.14 -2.38 -0.02 3.57 16 30 H 0.41 9.15 8.46 -92.70 -0.78 8.37 16 31 H 0.07 1.82 7.98 -2.39 -0.02 1.80 16 32 H 0.06 1.72 7.01 -2.39 -0.02 1.70 16 33 H 0.14 1.95 8.00 -2.91 -0.02 1.93 16 34 H 0.15 1.19 8.06 -2.91 -0.02 1.16 16 35 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 36 H 0.15 1.23 8.06 -2.91 -0.02 1.20 16 37 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 38 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 39 H 0.12 2.71 6.61 -2.91 -0.02 2.69 16 Total: -1.00 -74.77 331.29 3.02 -71.75 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.22 Total: 12.01 kcal Atomic # 6 Polarization: -29.04 SS G_CDS: 3.26 Total: -25.78 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -2.29 Total: -80.98 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.05 Total: -26.09 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 1.88 Total: 49.09 kcal Total: -74.77 3.02 -71.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292721068.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.097 kcal (2) G-P(sol) polarization free energy of solvation -74.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds