Wall clock time and date at job start Tue Mar 31 2020 05:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46499 * 120.00115 * 2 1 4 4 C 1.50693 * 109.47625 * 270.00374 * 3 2 1 5 5 C 1.38238 * 119.98747 * 260.23396 * 4 3 2 6 6 C 1.38182 * 120.04926 * 180.23109 * 5 4 3 7 7 C 1.38497 * 120.02770 * 359.78734 * 6 5 4 8 8 F 1.35103 * 120.01374 * 180.02562 * 7 6 5 9 9 C 1.38397 * 119.97392 * 359.97438 * 7 6 5 10 10 C 1.38438 * 119.94948 * 0.02562 * 9 7 6 11 11 F 1.35104 * 120.01364 * 179.97438 * 10 9 7 12 12 C 1.34776 * 119.99773 * 180.02562 * 2 1 3 13 13 O 1.21289 * 119.99794 * 179.97438 * 12 2 1 14 14 C 1.50697 * 120.00132 * 0.02562 * 12 2 1 15 15 C 1.53004 * 109.47130 * 180.02562 * 14 12 2 16 16 C 1.50702 * 109.47000 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00104 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99896 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99715 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99945 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47130 * 59.99953 * 20 18 16 22 22 H 1.48505 * 109.46921 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46967 * 299.99820 * 20 18 16 24 24 H 1.09004 * 109.46759 * 89.99224 * 1 2 3 25 25 H 1.08991 * 109.47129 * 209.99629 * 1 2 3 26 26 H 1.09004 * 109.46780 * 329.99945 * 1 2 3 27 27 H 1.09006 * 109.47078 * 149.99685 * 3 2 1 28 28 H 1.09000 * 109.47034 * 30.00433 * 3 2 1 29 29 H 1.08004 * 119.97328 * 359.97167 * 5 4 3 30 30 H 1.08004 * 119.98465 * 179.76793 * 6 5 4 31 31 H 1.07995 * 120.02726 * 180.02562 * 9 7 6 32 32 H 1.09001 * 109.46980 * 299.99797 * 14 12 2 33 33 H 1.08995 * 109.47242 * 59.99717 * 14 12 2 34 34 H 1.08996 * 109.47305 * 299.99926 * 15 14 12 35 35 H 1.09007 * 109.46830 * 60.00016 * 15 14 12 36 36 H 0.97005 * 119.99802 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7039 -1.4207 5 6 3.6815 1.4792 -2.0045 6 6 3.9147 1.8820 -3.3055 7 6 2.9120 2.5074 -4.0277 8 9 3.1402 2.9006 -5.3000 9 6 1.6758 2.7284 -3.4460 10 6 1.4433 2.3245 -2.1424 11 9 0.2372 2.5401 -1.5731 12 6 2.1389 -1.1672 -0.0005 13 8 3.3518 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0017 15 6 2.3796 -3.6353 -0.0014 16 6 1.6261 -4.9403 -0.0020 17 1 0.5461 -4.9403 -0.0029 18 6 2.3154 -6.1344 -0.0024 19 7 3.6306 -6.1344 -0.0018 20 14 1.3814 -7.7521 -0.0038 21 1 0.5282 -7.8300 -1.2166 22 1 2.3464 -8.8809 -0.0034 23 1 0.5271 -7.8315 1.2083 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5137 26 1 -0.3633 0.8900 0.5139 27 1 3.1500 1.1383 0.5139 28 1 1.6085 2.0283 0.5139 29 1 4.4643 0.9922 -1.4418 30 1 4.8795 1.7093 -3.7593 31 1 0.8932 3.2156 -4.0085 32 1 0.7584 -2.5306 0.8880 33 1 0.7590 -2.5294 -0.8919 34 1 3.0069 -3.5772 -0.8909 35 1 3.0056 -3.5779 0.8891 36 1 4.1156 -6.9744 -0.0017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292731983.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:31 Heat of formation + Delta-G solvation = -108.702911 kcal Electronic energy + Delta-G solvation = -21748.550064 eV Core-core repulsion = 18061.529871 eV Total energy + Delta-G solvation = -3687.020194 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.21468 -49.19176 -39.79811 -38.66486 -35.37910 -33.52867 -32.04156 -31.01348 -30.62287 -27.27140 -26.37567 -24.86862 -23.36249 -22.30676 -21.11676 -18.66186 -18.36788 -17.44801 -16.81017 -16.44776 -16.35844 -15.89328 -15.76769 -15.55050 -15.29215 -14.84718 -14.58371 -14.41782 -13.97405 -13.34616 -13.13522 -12.95882 -12.44538 -12.33931 -12.16150 -12.02530 -11.95213 -11.82732 -11.47165 -11.11962 -10.91447 -10.61309 -9.95658 -9.64296 -9.35653 -9.21214 -9.10044 -8.78054 -8.52399 -8.31995 -5.96481 -4.00843 0.70039 0.82606 2.99783 3.16935 3.34288 3.38944 3.40413 3.49377 3.64979 4.20445 4.36701 4.46880 4.49742 4.64322 4.86554 5.09600 5.23950 5.38543 5.43313 5.50534 5.53701 5.64923 5.66253 5.77234 5.81261 5.89817 6.11034 6.21199 6.22425 6.55733 6.64198 6.87098 7.66118 7.73410 7.85243 8.06219 8.37684 8.68128 9.07136 9.62709 11.14428 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.021853 B = 0.003740 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.992364 B = 7484.739745 C = 7964.723710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.626 5.626 3 C 0.156 3.844 4 C -0.146 4.146 5 C -0.036 4.036 6 C -0.164 4.164 7 C 0.128 3.872 8 F -0.134 7.134 9 C -0.198 4.198 10 C 0.140 3.860 11 F -0.129 7.129 12 C 0.513 3.487 13 O -0.530 6.530 14 C -0.128 4.128 15 C 0.038 3.962 16 C -0.528 4.528 17 H 0.055 0.945 18 C 0.059 3.941 19 N -0.890 5.890 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.051 0.949 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.151 0.849 30 H 0.143 0.857 31 H 0.146 0.854 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.899 20.316 -3.880 21.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.361 5.361 3 C 0.033 3.967 4 C -0.148 4.148 5 C -0.054 4.054 6 C -0.183 4.183 7 C 0.108 3.892 8 F -0.112 7.112 9 C -0.217 4.217 10 C 0.120 3.880 11 F -0.108 7.108 12 C 0.304 3.696 13 O -0.405 6.405 14 C -0.168 4.168 15 C 0.000 4.000 16 C -0.566 4.566 17 H 0.073 0.927 18 C -0.143 4.143 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 H 0.069 0.931 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.117 0.883 28 H 0.103 0.897 29 H 0.168 0.832 30 H 0.161 0.839 31 H 0.164 0.836 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.041 0.959 35 H 0.042 0.958 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.128 20.189 -3.882 20.970 hybrid contribution -0.828 -0.740 -0.342 1.162 sum -4.956 19.449 -4.223 20.510 Atomic orbital electron populations 1.21796 0.79474 1.03139 1.01725 1.48126 1.06912 1.05281 1.75765 1.20185 0.99442 0.86155 0.90908 1.20499 0.93761 1.01443 0.99112 1.21017 0.96399 0.94360 0.93663 1.21274 0.99924 1.01617 0.95458 1.17328 0.93897 0.98287 0.79668 1.91526 1.94980 1.88661 1.36041 1.20951 0.98159 1.07240 0.95381 1.17124 0.81034 0.98835 0.91013 1.91508 1.42073 1.92632 1.84558 1.21637 0.88480 0.85457 0.74061 1.90636 1.14309 1.87224 1.48379 1.21896 1.00734 0.91810 1.02323 1.18901 0.93152 0.89360 0.98554 1.21180 0.92883 0.91028 1.51521 0.92692 1.25011 0.94816 0.99184 0.95270 1.69986 1.06050 1.26690 1.50122 0.86659 0.79566 0.83197 0.78555 1.20255 1.21271 1.20241 0.93064 0.90307 0.91443 0.88348 0.89659 0.83173 0.83874 0.83598 0.90186 0.90315 0.95884 0.95828 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.92 9.43 59.85 0.56 1.49 16 2 N -0.63 -8.98 2.86 -182.95 -0.52 -9.51 16 3 C 0.16 1.90 5.30 -5.20 -0.03 1.87 16 4 C -0.15 -1.76 5.47 -104.55 -0.57 -2.33 16 5 C -0.04 -0.43 9.66 -39.60 -0.38 -0.81 16 6 C -0.16 -1.79 10.02 -39.51 -0.40 -2.18 16 7 C 0.13 1.42 7.30 -39.43 -0.29 1.13 16 8 F -0.13 -1.51 17.27 2.25 0.04 -1.47 16 9 C -0.20 -2.09 10.01 -39.45 -0.39 -2.49 16 10 C 0.14 1.59 7.24 -39.43 -0.29 1.30 16 11 F -0.13 -1.42 15.79 2.25 0.04 -1.38 16 12 C 0.51 9.71 7.67 -10.99 -0.08 9.62 16 13 O -0.53 -11.77 15.56 5.55 0.09 -11.69 16 14 C -0.13 -2.59 4.19 -27.88 -0.12 -2.71 16 15 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 16 C -0.53 -14.91 9.11 -34.44 -0.31 -15.22 16 17 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -27.28 13.29 55.43 0.74 -26.55 16 20 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H 0.05 0.57 8.13 -51.93 -0.42 0.15 16 25 H 0.08 0.87 6.44 -51.93 -0.33 0.53 16 26 H 0.07 0.61 7.89 -51.93 -0.41 0.20 16 27 H 0.10 1.26 7.29 -51.93 -0.38 0.88 16 28 H 0.09 0.83 7.70 -51.93 -0.40 0.43 16 29 H 0.15 1.82 8.04 -52.48 -0.42 1.39 16 30 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 31 H 0.15 1.27 8.06 -52.49 -0.42 0.84 16 32 H 0.08 1.48 7.40 -51.93 -0.38 1.09 16 33 H 0.08 1.49 8.11 -51.93 -0.42 1.07 16 34 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 35 H 0.02 0.68 8.10 -51.92 -0.42 0.26 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 320.11 15.07 4.82 4.82 Total: -1.00 -32.81 320.11 -6.73 -39.55 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -4.40 Total: -2.53 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -2.51 Total: -7.82 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.21 Total: -36.06 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.09 Total: -11.69 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.07 Total: -2.86 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.81 -6.73 -39.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292731983.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.158 kcal (2) G-P(sol) polarization free energy of solvation -32.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds