Wall clock time and date at job start Tue Mar 31 2020 05:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47062 * 2 1 4 4 C 1.50690 * 109.47435 * 239.99388 * 2 1 3 5 5 O 1.21284 * 120.00248 * 240.00098 * 4 2 1 6 6 N 1.34782 * 119.99836 * 60.00414 * 4 2 1 7 7 C 1.39237 * 120.00319 * 174.42305 * 6 4 2 8 8 C 1.39485 * 119.83286 * 325.29337 * 7 6 4 9 9 C 1.36370 * 120.17319 * 180.23318 * 8 7 6 10 10 C 1.40876 * 119.82126 * 359.49647 * 9 8 7 11 11 C 1.41157 * 120.15998 * 180.25156 * 10 9 8 12 12 H 1.07999 * 119.99696 * 34.63667 * 11 10 9 13 13 C 1.39899 * 119.99886 * 214.63578 * 11 10 9 14 14 N 1.30867 * 120.00246 * 5.45255 * 13 11 10 15 15 Si 1.86808 * 119.99990 * 185.45097 * 13 11 10 16 16 H 1.48497 * 109.47044 * 59.99686 * 15 13 11 17 17 H 1.48490 * 109.46981 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46806 * 300.00009 * 15 13 11 19 19 C 1.40860 * 119.67518 * 0.49953 * 10 9 8 20 20 C 1.36379 * 119.83139 * 359.75584 * 19 10 9 21 21 C 1.53005 * 109.46768 * 119.99627 * 2 1 3 22 22 C 1.53005 * 109.46952 * 295.00142 * 21 2 1 23 23 F 1.39897 * 109.47429 * 55.00066 * 21 2 1 24 24 F 1.39897 * 109.46879 * 175.00518 * 21 2 1 25 25 H 1.08996 * 109.46662 * 60.00753 * 1 2 3 26 26 H 1.09004 * 109.47062 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47684 * 300.00116 * 1 2 3 28 28 H 0.96997 * 119.99936 * 354.42065 * 6 4 2 29 29 H 1.08000 * 119.91318 * 359.95775 * 8 7 6 30 30 H 1.07996 * 120.08975 * 179.75001 * 9 8 7 31 31 H 0.97004 * 120.00205 * 179.97438 * 14 13 11 32 32 H 1.07999 * 120.08695 * 179.72798 * 19 10 9 33 33 H 1.07996 * 119.91990 * 179.97438 * 20 19 10 34 34 H 1.09002 * 109.47121 * 60.00629 * 22 21 2 35 35 H 1.09008 * 109.46695 * 180.02562 * 22 21 2 36 36 H 1.08996 * 109.47044 * 299.99592 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.7297 -1.6966 -1.1189 6 7 1.7069 -0.2501 -2.4545 7 6 2.2637 -0.8346 -3.5889 8 6 3.5731 -1.3139 -3.5510 9 6 4.1270 -1.8833 -4.6594 10 6 3.3694 -1.9964 -5.8417 11 6 3.9338 -2.5894 -6.9917 12 1 4.6306 -3.4083 -6.8902 13 6 3.5906 -2.1163 -8.2627 14 7 2.8311 -1.0574 -8.3838 15 14 4.2165 -2.9960 -9.7872 16 1 3.7308 -4.3992 -9.7834 17 1 3.7155 -2.3014 -11.0002 18 1 5.7015 -2.9862 -9.7896 19 6 2.0478 -1.5101 -5.8724 20 6 1.5093 -0.9383 -4.7575 21 6 2.0400 -0.7212 1.2494 22 6 1.6351 0.0691 2.4954 23 9 1.4821 -2.0028 1.3084 24 9 3.4342 -0.8215 1.1934 25 1 -0.3632 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.0847 0.4885 -2.5452 29 1 4.1513 -1.2297 -2.6426 30 1 5.1422 -2.2503 -4.6297 31 1 2.5935 -0.7292 -9.2651 32 1 1.4625 -1.5894 -6.7766 33 1 0.4962 -0.5647 -4.7795 34 1 0.5487 0.1472 2.5390 35 1 1.9988 -0.4445 3.3854 36 1 2.0698 1.0676 2.4494 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292811262.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:24 Heat of formation + Delta-G solvation = -124.260407 kcal Electronic energy + Delta-G solvation = -22059.516692 eV Core-core repulsion = 18371.821874 eV Total energy + Delta-G solvation = -3687.694817 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.81589 -46.79133 -39.78836 -37.36479 -34.78828 -34.46463 -32.86591 -30.17665 -29.57949 -28.71449 -25.79074 -24.82282 -22.36785 -21.27286 -20.62060 -19.54417 -17.59275 -17.50407 -17.24015 -16.77054 -15.94413 -15.64046 -15.13624 -14.91866 -14.17217 -13.88894 -13.67850 -13.36481 -13.10668 -13.02252 -12.90990 -12.82738 -12.57195 -12.29028 -12.14621 -12.08349 -11.82598 -11.70446 -11.46927 -11.12241 -10.96447 -10.85175 -10.53847 -10.05285 -9.78411 -9.36393 -9.19079 -8.77453 -7.57142 -6.90227 -6.67327 -4.32630 2.50050 3.00282 3.06916 3.09251 3.12719 3.28036 3.43640 3.70228 3.95789 3.97772 4.29694 4.44923 4.67925 4.80661 4.87600 5.03312 5.24889 5.36016 5.40555 5.50578 5.62181 5.66499 5.88113 6.16380 6.38445 6.72124 6.88673 7.04947 7.18336 7.27036 7.59294 7.67900 7.83605 8.04282 8.21511 8.28094 8.58981 8.69820 8.90869 8.98067 10.28429 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.045196 B = 0.003519 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.381498 B = 7954.564683 C = 8299.456966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.157 4.157 3 H 0.121 0.879 4 C 0.501 3.499 5 O -0.512 6.512 6 N -0.648 5.648 7 C 0.003 3.997 8 C -0.081 4.081 9 C -0.205 4.205 10 C 0.107 3.893 11 C -0.465 4.465 12 H 0.076 0.924 13 C 0.073 3.927 14 N -0.811 5.811 15 Si 0.913 3.087 16 H -0.265 1.265 17 H -0.279 1.279 18 H -0.266 1.266 19 C -0.139 4.139 20 C -0.117 4.117 21 C 0.309 3.691 22 C -0.195 4.195 23 F -0.192 7.192 24 F -0.190 7.190 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.395 0.605 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.279 0.721 32 H 0.121 0.879 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.443 6.562 14.491 17.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.180 4.180 3 H 0.139 0.861 4 C 0.286 3.714 5 O -0.387 6.387 6 N -0.291 5.291 7 C -0.089 4.089 8 C -0.101 4.101 9 C -0.225 4.225 10 C 0.105 3.895 11 C -0.495 4.495 12 H 0.095 0.905 13 C -0.143 4.143 14 N -0.438 5.438 15 Si 0.738 3.262 16 H -0.190 1.190 17 H -0.204 1.204 18 H -0.191 1.191 19 C -0.159 4.159 20 C -0.137 4.137 21 C 0.273 3.727 22 C -0.253 4.253 23 F -0.173 7.173 24 F -0.171 7.171 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.229 0.771 29 H 0.119 0.881 30 H 0.115 0.885 31 H 0.090 0.910 32 H 0.139 0.861 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.003 5.975 14.402 16.708 hybrid contribution 0.044 0.069 -0.841 0.845 sum -5.959 6.044 13.560 15.998 Atomic orbital electron populations 1.21829 0.90866 1.04212 1.03538 1.22476 0.99913 1.02273 0.93311 0.86074 1.20030 0.82078 0.84979 0.84273 1.90782 1.37084 1.24780 1.86061 1.42924 1.46260 1.35319 1.04627 1.17192 0.94098 1.11250 0.86330 1.20265 0.92869 0.99436 0.97546 1.20796 0.98989 1.08033 0.94668 1.17678 0.90718 0.89369 0.91755 1.19477 1.23701 1.16207 0.90159 0.90539 1.25853 0.93629 0.94084 1.00714 1.69773 1.29266 1.18961 1.25763 0.86292 0.79956 0.80219 0.79742 1.18976 1.20436 1.19100 1.20931 0.95648 1.02639 0.96697 1.20256 0.97314 1.02760 0.93401 1.20597 0.75460 0.80664 0.96019 1.22839 1.04465 1.01618 0.96370 1.93019 1.84904 1.42087 1.97328 1.93051 1.30235 1.96421 1.97398 0.90706 0.90823 0.90785 0.77129 0.88067 0.88504 0.91040 0.86086 0.89070 0.89062 0.89815 0.89262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.67 37.16 0.32 -0.94 16 2 C -0.16 -1.84 2.42 -91.77 -0.22 -2.06 16 3 H 0.12 1.07 8.14 -51.93 -0.42 0.64 16 4 C 0.50 8.77 6.64 -10.99 -0.07 8.70 16 5 O -0.51 -11.46 12.59 5.55 0.07 -11.39 16 6 N -0.65 -11.28 5.23 -9.74 -0.05 -11.33 16 7 C 0.00 0.07 6.26 -83.57 -0.52 -0.45 16 8 C -0.08 -1.99 8.57 -39.79 -0.34 -2.33 16 9 C -0.20 -5.29 9.74 -39.26 -0.38 -5.67 16 10 C 0.11 2.90 5.50 -106.80 -0.59 2.32 16 11 C -0.46 -12.52 9.03 -37.85 -0.34 -12.86 16 12 H 0.08 1.99 7.85 -52.49 -0.41 1.58 16 13 C 0.07 1.84 5.31 -17.34 -0.09 1.75 16 14 N -0.81 -21.00 10.96 55.54 0.61 -20.39 16 15 Si 0.91 19.00 29.56 -169.99 -5.03 13.98 16 16 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 17 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 18 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 19 C -0.14 -3.59 8.57 -39.26 -0.34 -3.92 16 20 C -0.12 -2.67 9.90 -39.79 -0.39 -3.06 16 21 C 0.31 3.94 1.50 -26.73 -0.04 3.90 16 22 C -0.20 -1.48 9.14 37.16 0.34 -1.14 16 23 F -0.19 -2.98 15.75 2.25 0.04 -2.94 16 24 F -0.19 -3.07 15.82 2.25 0.04 -3.04 16 25 H 0.07 0.55 7.45 -51.93 -0.39 0.16 16 26 H 0.07 0.76 7.69 -51.93 -0.40 0.36 16 27 H 0.07 0.42 6.56 -51.93 -0.34 0.08 16 28 H 0.39 5.26 8.08 -40.82 -0.33 4.93 16 29 H 0.10 2.46 6.50 -52.49 -0.34 2.12 16 30 H 0.10 2.38 8.06 -52.49 -0.42 1.96 16 31 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 32 H 0.12 3.19 6.46 -52.49 -0.34 2.85 16 33 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.09 0.50 6.57 -51.93 -0.34 0.16 16 35 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 36 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 308.48 15.07 4.65 4.65 Total: -1.00 -32.37 308.48 -6.49 -38.86 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -4.14 Total: 7.37 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -2.67 Total: -15.77 kcal Atomic # 7 Polarization: -32.28 SS G_CDS: 0.56 Total: -31.72 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.07 Total: -11.39 kcal Atomic # 9 Polarization: -6.05 SS G_CDS: 0.07 Total: -5.98 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.37 -6.49 -38.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292811262.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.400 kcal (2) G-P(sol) polarization free energy of solvation -32.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds