Wall clock time and date at job start Tue Mar 31 2020 05:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 F 1.39904 * 109.47207 * 2 1 4 4 F 1.39901 * 109.46812 * 240.00348 * 2 1 3 5 5 C 1.50693 * 109.47070 * 120.00140 * 2 1 3 6 6 O 1.21274 * 120.00470 * 25.00074 * 5 2 1 7 7 N 1.34784 * 120.00153 * 204.72381 * 5 2 1 8 8 C 1.46497 * 120.00193 * 175.46573 * 7 5 2 9 9 H 1.09005 * 109.47049 * 33.82024 * 8 7 5 10 10 C 1.53006 * 109.47107 * 153.81590 * 8 7 5 11 11 C 1.50700 * 109.47016 * 294.99970 * 10 8 7 12 12 H 1.08000 * 120.00229 * 0.02562 * 11 10 8 13 13 C 1.37871 * 120.00149 * 179.97438 * 11 10 8 14 14 N 1.31522 * 119.99999 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00273 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47154 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47498 * 120.00332 * 15 13 11 18 18 H 1.48503 * 109.47134 * 239.99961 * 15 13 11 19 19 C 1.50691 * 109.47053 * 273.81460 * 8 7 5 20 20 C 1.38235 * 120.00216 * 317.39667 * 19 8 7 21 21 C 1.38242 * 120.00258 * 179.79064 * 20 19 8 22 22 C 1.38241 * 119.99499 * 0.43840 * 21 20 19 23 23 C 1.38231 * 120.00059 * 359.81567 * 22 21 20 24 24 C 1.38235 * 120.00394 * 359.97319 * 23 22 21 25 25 H 1.08999 * 109.46826 * 300.00072 * 1 2 3 26 26 H 1.09004 * 109.46908 * 59.99592 * 1 2 3 27 27 H 1.08998 * 109.46992 * 179.97438 * 1 2 3 28 28 H 0.97007 * 119.99298 * 355.46194 * 7 5 2 29 29 H 1.09002 * 109.46810 * 54.99865 * 10 8 7 30 30 H 1.08997 * 109.47259 * 175.00071 * 10 8 7 31 31 H 0.97004 * 120.00113 * 180.02562 * 14 13 11 32 32 H 1.08000 * 119.99953 * 359.97438 * 20 19 8 33 33 H 1.07996 * 120.00070 * 180.27452 * 21 20 19 34 34 H 1.07996 * 119.99369 * 179.83945 * 22 21 20 35 35 H 1.08001 * 119.99785 * 180.02562 * 23 22 21 36 36 H 1.07995 * 120.00492 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9963 -0.6594 -1.1423 5 6 2.0323 -0.7104 1.2304 6 8 1.3371 -1.5393 1.7784 7 7 3.2566 -0.4286 1.7187 8 6 3.7059 -1.0447 2.9696 9 1 3.2916 -2.0498 3.0489 10 6 5.2340 -1.1207 2.9805 11 6 5.6986 -2.0502 1.8890 12 1 4.9762 -2.5375 1.2510 13 6 7.0458 -2.2775 1.7041 14 7 7.9255 -1.6837 2.4807 15 14 7.6216 -3.4290 0.3507 16 1 6.4437 -3.9664 -0.3765 17 1 8.4911 -2.6850 -0.5957 18 1 8.3880 -4.5517 0.9487 19 6 3.2360 -0.2141 4.1358 20 6 3.3209 1.1646 4.0811 21 6 2.8858 1.9268 5.1492 22 6 2.3741 1.3099 6.2756 23 6 2.2941 -0.0690 6.3323 24 6 2.7251 -0.8310 5.2625 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.8402 0.1821 1.2418 29 1 5.6485 -0.1267 2.8122 30 1 5.5722 -1.4966 3.9461 31 1 8.8734 -1.8433 2.3504 32 1 3.7244 1.6464 3.2028 33 1 2.9480 3.0041 5.1047 34 1 2.0366 1.9052 7.1110 35 1 1.8940 -0.5509 7.2121 36 1 2.6630 -1.9082 5.3069 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293476056.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:33 Heat of formation + Delta-G solvation = -122.377649 kcal Electronic energy + Delta-G solvation = -22514.051503 eV Core-core repulsion = 18826.438328 eV Total energy + Delta-G solvation = -3687.613175 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.07993 -47.07993 -39.76467 -38.53541 -35.47356 -32.82698 -31.65194 -31.09526 -30.53726 -28.89528 -25.60549 -24.11656 -22.39516 -22.00347 -20.68105 -19.93979 -18.31271 -17.67956 -16.88325 -16.52866 -16.19109 -15.54190 -14.96228 -14.83492 -14.53961 -14.26264 -13.88196 -13.75673 -13.40677 -13.25683 -13.06766 -12.79270 -12.64324 -12.59425 -12.40365 -12.16019 -11.90354 -11.64438 -11.18547 -11.00377 -10.79319 -10.64168 -10.53751 -9.85929 -9.70304 -9.33260 -8.71474 -8.58556 -8.49302 -8.28666 -6.12356 -4.16430 1.67962 1.73016 2.47056 2.98088 3.25963 3.34413 3.39699 3.83043 4.08245 4.18910 4.38188 4.60505 4.70988 5.19266 5.20558 5.24642 5.29527 5.36087 5.45998 5.52505 5.78560 5.82683 5.85381 6.04138 6.26306 6.34557 6.47227 6.61658 6.77239 6.78455 6.99730 7.32253 7.41786 7.48792 7.73993 7.83880 8.19791 8.26752 8.89450 9.49474 10.98053 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.010806 B = 0.007645 C = 0.005027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.516226 B = 3661.830308 C = 5569.012375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.278 3.722 3 F -0.191 7.191 4 F -0.183 7.183 5 C 0.483 3.517 6 O -0.515 6.515 7 N -0.677 5.677 8 C 0.181 3.819 9 H 0.093 0.907 10 C 0.023 3.977 11 C -0.524 4.524 12 H 0.059 0.941 13 C 0.061 3.939 14 N -0.891 5.891 15 Si 0.892 3.108 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.078 4.078 20 C -0.107 4.107 21 C -0.124 4.124 22 C -0.132 4.132 23 C -0.123 4.123 24 C -0.107 4.107 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.099 0.901 28 H 0.408 0.592 29 H 0.027 0.973 30 H 0.038 0.962 31 H 0.262 0.738 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.734 6.808 0.827 14.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.239 3.761 3 F -0.172 7.172 4 F -0.164 7.164 5 C 0.263 3.737 6 O -0.392 6.392 7 N -0.326 5.326 8 C 0.077 3.923 9 H 0.111 0.889 10 C -0.014 4.014 11 C -0.562 4.562 12 H 0.077 0.923 13 C -0.141 4.141 14 N -0.529 5.529 15 Si 0.720 3.280 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.079 4.079 20 C -0.125 4.125 21 C -0.142 4.142 22 C -0.150 4.150 23 C -0.141 4.141 24 C -0.125 4.125 25 H 0.110 0.890 26 H 0.105 0.895 27 H 0.118 0.882 28 H 0.244 0.756 29 H 0.045 0.955 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.989 6.243 1.244 14.465 hybrid contribution 0.953 -0.193 -1.080 1.453 sum -12.036 6.050 0.164 13.472 Atomic orbital electron populations 1.22592 0.89353 1.06553 1.05213 1.21459 0.95524 0.75681 0.83477 1.93043 1.90534 1.36931 1.96730 1.93087 1.90535 1.80776 1.52010 1.20610 0.83502 0.84097 0.85481 1.90725 1.56634 1.32352 1.59448 1.46031 1.14616 1.46704 1.25223 1.20421 0.99061 0.94639 0.78144 0.88921 1.19422 0.84978 0.98297 0.98713 1.21167 0.91892 1.27157 1.15991 0.92297 1.24983 0.96850 0.95974 0.96255 1.69969 1.01628 1.42963 1.38390 0.86529 0.78843 0.80768 0.81907 1.19626 1.20919 1.20918 1.20491 0.96813 0.94358 0.96263 1.20960 0.99431 0.93467 0.98623 1.21064 0.99730 0.99431 0.93966 1.21029 1.01149 0.94778 0.98060 1.21052 1.00651 0.94005 0.98381 1.21029 0.98196 1.00027 0.93251 0.89008 0.89545 0.88187 0.75597 0.95523 0.94376 0.92846 0.86381 0.86549 0.86711 0.86479 0.86054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 8.92 37.16 0.33 -1.69 16 2 C 0.28 4.10 2.46 -27.88 -0.07 4.04 16 3 F -0.19 -2.74 16.57 2.25 0.04 -2.70 16 4 F -0.18 -2.94 17.05 2.25 0.04 -2.90 16 5 C 0.48 8.57 7.20 -10.99 -0.08 8.49 16 6 O -0.52 -10.20 15.71 5.56 0.09 -10.12 16 7 N -0.68 -12.47 4.03 -54.94 -0.22 -12.70 16 8 C 0.18 3.63 2.17 -69.09 -0.15 3.48 16 9 H 0.09 2.00 7.31 -51.93 -0.38 1.62 16 10 C 0.02 0.55 4.48 -27.88 -0.12 0.43 16 11 C -0.52 -13.93 8.84 -34.44 -0.30 -14.23 16 12 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -25.53 13.29 55.43 0.74 -24.80 16 15 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 C -0.08 -1.41 4.92 -104.63 -0.51 -1.92 16 20 C -0.11 -1.75 9.31 -39.58 -0.37 -2.12 16 21 C -0.12 -1.77 10.05 -39.58 -0.40 -2.17 16 22 C -0.13 -1.79 10.05 -39.58 -0.40 -2.19 16 23 C -0.12 -1.76 10.05 -39.59 -0.40 -2.15 16 24 C -0.11 -1.77 9.67 -39.58 -0.38 -2.15 16 25 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.10 1.14 7.87 -51.93 -0.41 0.73 16 28 H 0.41 7.18 8.25 -40.82 -0.34 6.85 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.12 1.86 7.80 -52.49 -0.41 1.45 16 33 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 34 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.12 1.92 8.02 -52.49 -0.42 1.50 16 LS Contribution 323.09 15.07 4.87 4.87 Total: -1.00 -30.01 323.09 -6.88 -36.89 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -4.46 Total: 5.86 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -2.95 Total: -10.61 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.52 Total: -37.49 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 9 Polarization: -5.68 SS G_CDS: 0.08 Total: -5.60 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.01 -6.88 -36.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293476056.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.488 kcal (2) G-P(sol) polarization free energy of solvation -30.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds