Wall clock time and date at job start Tue Mar 31 2020 05:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09002 * 109.46321 * 2 1 4 4 C 1.52995 * 109.47453 * 119.99998 * 2 1 3 5 5 C 1.50700 * 109.47091 * 294.35588 * 4 2 1 6 6 H 1.07996 * 120.00230 * 356.00375 * 5 4 2 7 7 C 1.37883 * 119.99871 * 176.00321 * 5 4 2 8 8 N 1.31509 * 119.99934 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99767 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47542 * 60.00003 * 9 7 5 11 11 H 1.48504 * 109.46973 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46986 * 299.99715 * 9 7 5 13 13 N 1.46897 * 109.47196 * 240.00583 * 2 1 3 14 14 C 1.47846 * 111.00142 * 183.88713 * 13 2 1 15 15 C 1.54901 * 104.79538 * 213.63549 * 14 13 2 16 16 C 1.55139 * 101.65799 * 37.06595 * 15 14 13 17 17 H 1.09002 * 110.85304 * 82.79965 * 16 15 14 18 18 N 1.46500 * 110.70862 * 205.96382 * 16 15 14 19 19 C 1.35047 * 126.03539 * 28.31881 * 18 16 15 20 20 C 1.35368 * 107.72510 * 179.83847 * 19 18 16 21 21 Cl 1.73603 * 126.04541 * 180.15890 * 20 19 18 22 22 C 1.39932 * 107.91076 * 0.41907 * 20 19 18 23 23 N 1.30851 * 108.20714 * 359.73987 * 22 20 19 24 24 C 1.47445 * 111.00325 * 63.03888 * 13 2 1 25 25 H 1.08993 * 109.46693 * 299.99593 * 1 2 3 26 26 H 1.09000 * 109.46962 * 60.00516 * 1 2 3 27 27 H 1.09002 * 109.46321 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47507 * 174.35224 * 4 2 1 29 29 H 1.09007 * 109.46858 * 54.35203 * 4 2 1 30 30 H 0.97004 * 120.00181 * 180.02562 * 8 7 5 31 31 H 1.09003 * 110.37098 * 332.46061 * 14 13 2 32 32 H 1.08992 * 110.37444 * 94.79896 * 14 13 2 33 33 H 1.09003 * 110.99179 * 278.97231 * 15 14 13 34 34 H 1.09004 * 110.99121 * 155.15897 * 15 14 13 35 35 H 1.08004 * 126.13510 * 359.97438 * 19 18 16 36 36 H 1.07999 * 125.89078 * 179.75922 * 22 20 19 37 37 H 1.08998 * 109.89283 * 242.66301 * 24 13 2 38 38 H 1.09002 * 109.88735 * 3.85502 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0402 -0.7212 1.2492 5 6 1.6552 0.0653 2.4757 6 1 1.1591 1.0189 2.3720 7 6 1.9364 -0.4327 3.7303 8 7 2.5401 -1.5942 3.8566 9 14 1.4586 0.5419 5.2506 10 1 -0.0124 0.7447 5.2666 11 1 1.8690 -0.2052 6.4667 12 1 2.1400 1.8611 5.2272 13 7 2.0198 -0.6924 -1.1995 14 6 3.4947 -0.7936 -1.1878 15 6 3.9100 -0.6913 -2.6766 16 6 2.8909 0.3467 -3.2157 17 1 3.2236 1.3630 -3.0045 18 7 2.6750 0.1625 -4.6530 19 6 2.7918 -0.9993 -5.3314 20 6 2.5078 -0.7481 -6.6309 21 17 2.5114 -1.9103 -7.9205 22 6 2.2168 0.6153 -6.7520 23 7 2.3167 1.1615 -5.5671 24 6 1.6075 0.0171 -2.4245 25 1 -0.3632 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 3.1254 -0.8096 1.2001 29 1 1.5966 -1.7156 1.3012 30 1 2.7376 -1.9447 4.7393 31 1 3.9269 0.0275 -0.6160 32 1 3.8060 -1.7518 -0.7719 33 1 3.7943 -1.6506 -3.1811 34 1 4.9312 -0.3221 -2.7726 35 1 3.0611 -1.9575 -4.9120 36 1 1.9545 1.1280 -7.6656 37 1 0.9573 -0.6217 -3.0221 38 1 1.0868 0.9381 -2.1622 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298455313.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:34 Heat of formation + Delta-G solvation = 74.037786 kcal Electronic energy + Delta-G solvation = -19908.954736 eV Core-core repulsion = 16813.948205 eV Total energy + Delta-G solvation = -3095.006531 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.55886 -39.01420 -36.56890 -34.89341 -32.74834 -31.44335 -30.24632 -29.16901 -27.92016 -26.69296 -23.83228 -22.39411 -21.93251 -21.19520 -20.06361 -19.18890 -17.79137 -16.60452 -16.00407 -15.13057 -14.97533 -14.80146 -14.49112 -13.97472 -13.87570 -13.41052 -13.25054 -12.94975 -12.55551 -12.16673 -12.09718 -11.79083 -11.62857 -11.42786 -11.38354 -10.99407 -10.92412 -10.86791 -10.82139 -10.65921 -10.45185 -10.01978 -9.71903 -9.31268 -9.19564 -8.61779 -8.40056 -7.90472 -6.05351 -4.07548 1.55684 1.76608 2.39626 2.58923 3.29242 3.34355 3.36191 4.12440 4.23577 4.41743 4.52180 4.59760 4.68414 4.78439 5.09140 5.22977 5.30714 5.36429 5.41275 5.57849 5.67570 5.81437 5.91191 5.97586 6.05146 6.15567 6.21020 6.26769 6.57121 6.67798 6.78459 7.02509 7.34643 7.36219 7.38447 7.63749 7.77944 7.98768 8.36115 8.98315 9.56106 11.05882 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.043434 B = 0.003055 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.497603 B = 9161.869648 C = 9341.602933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.079 3.921 3 H 0.031 0.969 4 C 0.032 3.968 5 C -0.520 4.520 6 H 0.054 0.946 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.520 5.520 14 C 0.052 3.948 15 C -0.139 4.139 16 C 0.137 3.863 17 H 0.111 0.889 18 N -0.346 5.346 19 C 0.081 3.919 20 C -0.194 4.194 21 Cl -0.048 7.048 22 C 0.060 3.940 23 N -0.283 5.283 24 C 0.036 3.964 25 H 0.068 0.932 26 H 0.030 0.970 27 H 0.055 0.945 28 H 0.016 0.984 29 H 0.028 0.972 30 H 0.261 0.739 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.183 0.817 36 H 0.189 0.811 37 H 0.077 0.923 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.788 1.229 -19.544 19.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.029 4.029 3 H 0.049 0.951 4 C -0.005 4.005 5 C -0.559 4.559 6 H 0.072 0.928 7 C -0.142 4.142 8 N -0.532 5.532 9 Si 0.719 3.281 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.245 5.245 14 C -0.076 4.076 15 C -0.178 4.178 16 C 0.035 3.965 17 H 0.129 0.871 18 N -0.127 5.127 19 C -0.067 4.067 20 C -0.233 4.233 21 Cl -0.020 7.020 22 C -0.127 4.127 23 N -0.104 5.104 24 C -0.093 4.093 25 H 0.086 0.914 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.034 0.966 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.200 0.800 36 H 0.206 0.794 37 H 0.096 0.904 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.546 1.629 -18.656 18.790 hybrid contribution 0.144 0.428 0.303 0.544 sum 1.689 2.058 -18.353 18.545 Atomic orbital electron populations 1.21752 0.95066 1.01764 1.00172 1.22106 0.95357 0.95235 0.90155 0.95138 1.19158 0.96093 0.96219 0.89034 1.21128 1.38777 1.05128 0.90853 0.92752 1.24977 0.95214 0.94978 0.99040 1.69948 1.41544 1.18187 1.23498 0.86682 0.78990 0.80048 0.82429 1.20213 1.21272 1.20315 1.63814 1.09661 1.49423 1.01637 1.22952 0.88322 1.03251 0.93105 1.23217 0.98306 0.98605 0.97669 1.22864 0.98114 1.02094 0.73445 0.87082 1.48571 1.51378 1.05177 1.07583 1.22218 1.00335 0.92962 0.91205 1.20727 1.20557 0.91937 0.90051 1.98319 1.97955 1.57782 1.47933 1.23847 1.00038 0.91852 0.96924 1.77503 1.21488 1.13254 0.98166 1.23250 0.95102 0.98687 0.92294 0.91357 0.95079 0.92579 0.96619 0.95393 0.92901 0.92413 0.89011 0.89705 0.89717 0.80003 0.79382 0.90446 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 8.93 37.16 0.33 -2.08 16 2 C 0.08 1.54 1.63 -67.71 -0.11 1.43 16 3 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 4 C 0.03 0.79 4.38 -27.89 -0.12 0.67 16 5 C -0.52 -14.00 8.34 -34.44 -0.29 -14.29 16 6 H 0.05 1.42 7.25 -52.49 -0.38 1.04 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 9 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.52 -8.58 5.03 -223.29 -1.12 -9.70 16 14 C 0.05 0.76 5.27 -2.30 -0.01 0.74 16 15 C -0.14 -1.53 6.42 -24.60 -0.16 -1.69 16 16 C 0.14 1.65 4.09 -66.11 -0.27 1.38 16 17 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 18 N -0.35 -4.20 3.58 -53.05 -0.19 -4.39 16 19 C 0.08 0.88 10.56 -17.16 -0.18 0.70 16 20 C -0.19 -2.09 6.65 -39.97 -0.27 -2.36 16 21 Cl -0.05 -0.46 29.30 -51.86 -1.52 -1.98 16 22 C 0.06 0.65 12.02 -17.33 -0.21 0.44 16 23 N -0.28 -3.68 12.57 30.64 0.39 -3.30 16 24 C 0.04 0.50 5.91 -2.83 -0.02 0.49 16 25 H 0.07 1.34 7.08 -51.93 -0.37 0.97 16 26 H 0.03 0.50 6.69 -51.93 -0.35 0.15 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.02 0.40 6.65 -51.93 -0.35 0.05 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.06 0.90 7.47 -51.93 -0.39 0.51 16 32 H 0.09 1.41 8.11 -51.93 -0.42 0.99 16 33 H 0.08 0.84 6.26 -51.93 -0.32 0.52 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.18 1.60 6.79 -52.48 -0.36 1.24 16 36 H 0.19 1.47 8.06 -52.49 -0.42 1.05 16 37 H 0.08 1.11 8.03 -51.93 -0.42 0.69 16 38 H 0.07 0.97 6.55 -51.93 -0.34 0.63 16 LS Contribution 322.22 15.07 4.86 4.86 Total: -1.00 -29.38 322.22 -8.63 -38.01 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -5.36 Total: -1.29 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -1.40 Total: -13.01 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: -0.19 Total: -42.67 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.52 Total: -1.98 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.38 -8.63 -38.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298455313.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.051 kcal (2) G-P(sol) polarization free energy of solvation -29.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds