Wall clock time and date at job start Tue Mar 31 2020 05:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46996 * 2 1 4 4 N 1.46499 * 109.46656 * 179.97438 * 3 2 1 5 5 C 1.37100 * 119.99754 * 266.62990 * 4 3 2 6 6 H 1.07995 * 119.99576 * 143.96856 * 5 4 3 7 7 C 1.38948 * 120.00118 * 323.96746 * 5 4 3 8 8 N 1.31412 * 119.99785 * 159.45434 * 7 5 4 9 9 Si 1.86801 * 120.00200 * 339.46163 * 7 5 4 10 10 H 1.48494 * 109.47500 * 92.90226 * 9 7 5 11 11 H 1.48502 * 109.46951 * 212.90596 * 9 7 5 12 12 H 1.48497 * 109.46807 * 332.90154 * 9 7 5 13 13 C 1.34779 * 120.00307 * 86.63898 * 4 3 2 14 14 O 1.21294 * 119.99684 * 5.20035 * 13 4 3 15 15 C 1.50694 * 120.00113 * 185.20869 * 13 4 3 16 16 F 1.39894 * 109.47488 * 79.94836 * 15 13 4 17 17 F 1.39905 * 109.47114 * 319.94793 * 15 13 4 18 18 C 1.50700 * 109.47177 * 199.94803 * 15 13 4 19 19 C 1.38229 * 120.00338 * 269.99905 * 18 15 13 20 20 C 1.38240 * 120.00436 * 179.97438 * 19 18 15 21 21 C 1.38232 * 119.99650 * 359.97438 * 20 19 18 22 22 C 1.38237 * 120.00187 * 0.28082 * 21 20 19 23 23 C 1.38236 * 119.99815 * 359.50640 * 22 21 20 24 24 H 1.09000 * 109.47118 * 60.00237 * 1 2 3 25 25 H 1.09000 * 109.47114 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47173 * 300.00375 * 1 2 3 27 27 H 1.09002 * 109.47173 * 239.99625 * 2 1 3 28 28 H 1.09000 * 109.46375 * 119.99757 * 2 1 3 29 29 H 1.08993 * 109.47192 * 59.99752 * 3 2 1 30 30 H 1.09007 * 109.47222 * 299.99503 * 3 2 1 31 31 H 0.96998 * 119.99795 * 180.02562 * 8 7 5 32 32 H 1.08000 * 119.99616 * 359.97438 * 19 18 15 33 33 H 1.07994 * 120.00173 * 179.97438 * 20 19 18 34 34 H 1.08003 * 120.00247 * 180.02562 * 21 20 19 35 35 H 1.07998 * 120.00201 * 179.72620 * 22 21 20 36 36 H 1.07998 * 120.00269 * 180.27611 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1900 1.5123 1.1862 6 1 5.1149 0.9683 1.3083 7 6 3.6942 2.2831 2.2306 8 7 4.0905 2.0535 3.4623 9 14 2.4641 3.6455 1.8839 10 1 1.0845 3.1161 2.0307 11 1 2.6727 4.7573 2.8460 12 1 2.6574 4.1463 0.4993 13 6 4.1795 1.3738 -1.1643 14 8 3.5772 1.4072 -2.2166 15 6 5.6817 1.2552 -1.1593 16 9 6.0440 -0.0729 -0.9105 17 9 6.2111 2.0782 -0.1594 18 6 6.2236 1.6810 -2.4995 19 6 6.3846 0.7492 -3.5077 20 6 6.8812 1.1398 -4.7373 21 6 7.2164 2.4625 -4.9586 22 6 7.0604 3.3935 -3.9487 23 6 6.5596 3.0036 -2.7206 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6767 1.9563 -0.8901 31 1 3.7442 2.5913 4.1914 32 1 6.1224 -0.2841 -3.3348 33 1 7.0073 0.4117 -5.5248 34 1 7.6040 2.7679 -5.9193 35 1 7.3264 4.4260 -4.1203 36 1 6.4336 3.7317 -1.9330 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299033983.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:43 Heat of formation + Delta-G solvation = -90.327794 kcal Electronic energy + Delta-G solvation = -23201.332524 eV Core-core repulsion = 19515.109135 eV Total energy + Delta-G solvation = -3686.223389 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.40306 -46.35584 -39.17070 -38.58508 -35.58279 -33.07274 -31.76998 -31.66637 -30.75075 -27.27438 -25.73974 -24.63571 -22.41777 -21.92528 -21.05958 -19.49239 -18.03670 -17.59238 -16.82442 -16.38221 -15.69128 -15.25337 -14.90759 -14.47696 -14.36712 -14.25973 -13.83029 -13.40179 -13.29471 -13.04232 -12.84287 -12.64949 -12.58831 -12.42039 -12.19518 -11.91961 -11.74571 -11.58823 -11.08218 -10.99010 -10.94964 -10.80935 -10.46426 -10.09299 -9.84251 -9.35180 -8.86959 -8.75898 -8.65948 -8.00271 -6.57029 -4.16504 1.37761 1.56399 2.90902 3.09346 3.20528 3.26639 3.63417 3.91690 4.02370 4.38960 4.75404 4.93949 4.98117 5.10694 5.23510 5.42764 5.47152 5.53464 5.56862 5.62506 5.78650 5.83862 5.94192 5.99757 6.19139 6.19977 6.26180 6.35657 6.53115 6.60000 6.64464 6.69966 6.78564 7.08008 7.16706 7.87544 8.10476 8.69787 9.08403 9.34776 10.52443 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.019443 B = 0.006721 C = 0.005998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.763366 B = 4164.822867 C = 4666.838507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.097 3.903 4 N -0.433 5.433 5 C -0.352 4.352 6 H 0.115 0.885 7 C 0.073 3.927 8 N -0.848 5.848 9 Si 0.875 3.125 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.261 1.261 13 C 0.435 3.565 14 O -0.565 6.565 15 C 0.345 3.655 16 F -0.189 7.189 17 F -0.166 7.166 18 C -0.121 4.121 19 C -0.074 4.074 20 C -0.126 4.126 21 C -0.110 4.110 22 C -0.125 4.125 23 C -0.083 4.083 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.278 0.722 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.708 0.151 -10.177 10.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C -0.025 4.025 4 N -0.151 5.151 5 C -0.478 4.478 6 H 0.133 0.867 7 C -0.135 4.135 8 N -0.482 5.482 9 Si 0.703 3.297 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.185 1.185 13 C 0.220 3.780 14 O -0.449 6.449 15 C 0.305 3.695 16 F -0.170 7.170 17 F -0.147 7.147 18 C -0.123 4.123 19 C -0.092 4.092 20 C -0.144 4.144 21 C -0.129 4.129 22 C -0.143 4.143 23 C -0.101 4.101 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.410 0.204 -10.399 10.497 hybrid contribution -0.492 0.649 0.371 0.895 sum 0.918 0.854 -10.028 10.106 Atomic orbital electron populations 1.21701 0.95962 1.01307 1.01502 1.21762 0.95137 0.97300 1.02817 1.21839 0.81399 0.97449 1.01842 1.43820 1.04585 1.61042 1.05623 1.19360 1.09682 1.30696 0.88105 0.86730 1.25252 0.97017 0.96724 0.94545 1.69734 1.42460 1.37312 0.98702 0.87011 0.80778 0.82355 0.79574 1.19770 1.21125 1.18494 1.20258 0.87749 0.84999 0.84954 1.90609 1.67985 1.55441 1.30823 1.19436 0.91957 0.73828 0.84268 1.92997 1.92903 1.36009 1.95048 1.93103 1.87608 1.71597 1.62362 1.20018 1.02081 0.95598 0.94569 1.20881 0.96394 0.99484 0.92410 1.21048 1.00292 0.96304 0.96732 1.21185 0.99396 0.93425 0.98844 1.21052 1.00558 0.99650 0.93055 1.20972 0.96488 0.94824 0.97798 0.92923 0.92767 0.92878 0.91890 0.90941 0.90927 0.90931 0.91187 0.85455 0.85733 0.86000 0.85691 0.85172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.91 37.16 0.37 -1.90 16 2 C -0.13 -2.54 6.24 -26.73 -0.17 -2.70 16 3 C 0.10 2.14 4.09 -4.04 -0.02 2.13 16 4 N -0.43 -10.67 2.22 -114.82 -0.25 -10.93 16 5 C -0.35 -9.34 8.00 -14.93 -0.12 -9.46 16 6 H 0.12 3.28 6.64 -52.49 -0.35 2.93 16 7 C 0.07 1.94 5.33 -17.47 -0.09 1.84 16 8 N -0.85 -23.24 13.96 55.50 0.77 -22.47 16 9 Si 0.88 20.27 24.94 -169.99 -4.24 16.03 16 10 H -0.27 -5.90 6.58 56.52 0.37 -5.53 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.26 -6.16 7.11 56.52 0.40 -5.76 16 13 C 0.44 10.50 7.11 -10.99 -0.08 10.42 16 14 O -0.56 -14.02 15.78 5.55 0.09 -13.93 16 15 C 0.34 7.63 1.60 -29.04 -0.05 7.58 16 16 F -0.19 -4.13 16.11 2.25 0.04 -4.10 16 17 F -0.17 -3.87 13.41 2.25 0.03 -3.84 16 18 C -0.12 -2.32 4.32 -104.62 -0.45 -2.78 16 19 C -0.07 -1.23 9.39 -39.58 -0.37 -1.61 16 20 C -0.13 -1.71 10.05 -39.58 -0.40 -2.11 16 21 C -0.11 -1.40 10.05 -39.58 -0.40 -1.80 16 22 C -0.13 -1.73 10.05 -39.58 -0.40 -2.13 16 23 C -0.08 -1.42 9.40 -39.58 -0.37 -1.79 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 29 H 0.07 1.63 3.02 -51.93 -0.16 1.47 16 30 H 0.07 1.57 7.46 -51.92 -0.39 1.19 16 31 H 0.28 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.13 2.05 7.60 -52.49 -0.40 1.65 16 33 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 35 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.13 2.19 7.60 -52.49 -0.40 1.80 16 LS Contribution 308.26 15.07 4.65 4.65 Total: -1.00 -29.42 308.26 -5.70 -35.12 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -4.24 Total: 3.77 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -2.54 Total: -4.30 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: 0.52 Total: -33.39 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.09 Total: -13.93 kcal Atomic # 9 Polarization: -8.00 SS G_CDS: 0.07 Total: -7.93 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.24 Total: 16.03 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.42 -5.70 -35.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299033983.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.213 kcal (2) G-P(sol) polarization free energy of solvation -29.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds