Wall clock time and date at job start Tue Mar 31 2020 05:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46503 * 120.00472 * 2 1 4 4 C 1.50701 * 109.46898 * 269.99874 * 3 2 1 5 5 H 1.08000 * 120.00104 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00141 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99673 * 0.02562 * 6 4 3 8 8 Si 1.86795 * 120.00288 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47153 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47208 * 119.99881 * 8 6 4 11 11 H 1.48496 * 109.47540 * 240.00457 * 8 6 4 12 12 C 1.34784 * 119.99957 * 179.97438 * 2 1 3 13 13 O 1.21275 * 119.99818 * 180.02562 * 12 2 1 14 14 C 1.50703 * 119.99539 * 0.02562 * 12 2 1 15 15 C 1.53005 * 109.46579 * 179.97438 * 14 12 2 16 16 C 1.50703 * 109.46579 * 179.97438 * 15 14 12 17 17 C 1.38256 * 120.00097 * 264.97662 * 16 15 14 18 18 C 1.38215 * 120.07338 * 180.02562 * 17 16 15 19 19 C 1.38259 * 120.06411 * 359.97438 * 18 17 16 20 20 C 1.38360 * 120.00548 * 0.02562 * 19 18 17 21 21 F 1.35100 * 120.04001 * 179.97438 * 20 19 18 22 22 C 1.38365 * 119.99959 * 85.00735 * 16 15 14 23 23 F 1.35108 * 120.03441 * 0.24624 * 22 16 15 24 24 H 1.08997 * 109.47007 * 270.00581 * 1 2 3 25 25 H 1.09004 * 109.47064 * 30.00006 * 1 2 3 26 26 H 1.08993 * 109.47669 * 150.00283 * 1 2 3 27 27 H 1.09004 * 109.47065 * 29.99711 * 3 2 1 28 28 H 1.09000 * 109.47208 * 150.00071 * 3 2 1 29 29 H 0.97003 * 119.99570 * 179.97438 * 7 6 4 30 30 H 1.09003 * 109.47009 * 60.00435 * 14 12 2 31 31 H 1.08997 * 109.47090 * 299.99711 * 14 12 2 32 32 H 1.09003 * 109.46743 * 60.00702 * 15 14 12 33 33 H 1.08997 * 109.47525 * 299.99875 * 15 14 12 34 34 H 1.08000 * 119.96449 * 0.02753 * 17 16 15 35 35 H 1.07997 * 119.96637 * 179.97438 * 18 17 16 36 36 H 1.08003 * 119.99482 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7036 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1262 2.8778 -1.6729 7 7 3.5535 3.6179 -0.6733 8 14 3.4382 3.4166 -3.4340 9 1 2.8610 2.4161 -4.3674 10 1 2.8002 4.7369 -3.6681 11 1 4.9008 3.5252 -3.6667 12 6 2.1389 -1.1673 0.0005 13 8 3.3516 -1.1672 0.0010 14 6 1.3852 -2.4723 0.0005 15 6 2.3795 -3.6353 0.0005 16 6 1.6259 -4.9404 0.0012 17 6 1.3714 -5.5911 1.1942 18 6 0.6808 -6.7883 1.1964 19 6 0.2426 -7.3374 0.0056 20 6 0.4957 -6.6887 -1.1900 21 9 0.0682 -7.2249 -2.3540 22 6 1.1892 -5.4876 -1.1923 23 9 1.4424 -4.8552 -2.3590 24 1 -0.3633 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3634 -0.8899 -0.5137 27 1 1.6085 2.0284 0.5138 28 1 3.1500 1.1383 0.5138 29 1 4.0304 4.4437 -0.8506 30 1 0.7590 -2.5302 -0.8898 31 1 0.7583 -2.5298 0.8903 32 1 3.0061 -3.5776 0.8906 33 1 3.0062 -3.5776 -0.8894 34 1 1.7125 -5.1634 2.1253 35 1 0.4833 -7.2954 2.1293 36 1 -0.2973 -8.2729 0.0087 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299559656.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:01 Heat of formation + Delta-G solvation = -109.285053 kcal Electronic energy + Delta-G solvation = -21552.622030 eV Core-core repulsion = 17865.576592 eV Total energy + Delta-G solvation = -3687.045437 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.59948 -48.66997 -39.52522 -38.77204 -34.90968 -33.99368 -32.58003 -30.54535 -30.02632 -27.77897 -25.94346 -24.84072 -23.04869 -22.67360 -21.37719 -18.37783 -18.05623 -17.47722 -17.12344 -16.53255 -16.46966 -16.12371 -15.31678 -15.12591 -15.05627 -15.03697 -14.51995 -14.23555 -13.70717 -13.49313 -13.04157 -12.83169 -12.41972 -12.30579 -12.18399 -11.99820 -11.88749 -11.73600 -11.27574 -11.17163 -10.95852 -10.81011 -10.57328 -10.14862 -9.59929 -9.20927 -8.97942 -8.83552 -8.43093 -7.63891 -6.03782 -4.08351 0.68158 0.71167 3.08732 3.30804 3.37732 3.40546 3.46123 3.55111 3.94972 4.15799 4.32385 4.45353 4.47067 4.71844 4.80579 5.10199 5.17064 5.26572 5.31814 5.50116 5.53469 5.61424 5.65210 5.75268 5.80942 5.90911 5.94943 6.17065 6.20853 6.23265 6.51805 7.05650 7.44453 7.54731 7.92954 8.24279 8.41953 8.91080 9.09563 9.56949 11.04342 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.026595 B = 0.003589 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.578647 B = 7799.261074 C = 8321.025569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.603 5.603 3 C 0.244 3.756 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.504 3.496 13 O -0.543 6.543 14 C -0.134 4.134 15 C -0.068 4.068 16 C -0.081 4.081 17 C -0.098 4.098 18 C -0.099 4.099 19 C -0.135 4.135 20 C 0.066 3.934 21 F -0.131 7.131 22 C 0.069 3.931 23 F -0.123 7.123 24 H 0.044 0.956 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.032 0.968 28 H 0.044 0.956 29 H 0.263 0.737 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.499 -20.726 5.029 23.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.335 5.335 3 C 0.125 3.875 4 C -0.565 4.565 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.208 1.208 12 C 0.291 3.709 13 O -0.421 6.421 14 C -0.174 4.174 15 C -0.106 4.106 16 C -0.082 4.082 17 C -0.117 4.117 18 C -0.118 4.118 19 C -0.154 4.154 20 C 0.046 3.954 21 F -0.109 7.109 22 C 0.049 3.951 23 F -0.101 7.101 24 H 0.063 0.937 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.160 0.840 35 H 0.157 0.843 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.773 -20.512 4.972 22.857 hybrid contribution -0.037 0.413 -1.496 1.553 sum -8.811 -20.099 3.476 22.218 Atomic orbital electron populations 1.21640 0.81467 1.02623 1.00372 1.48165 1.06179 1.07894 1.71272 1.19297 0.92554 0.78121 0.97516 1.21485 1.36389 1.06228 0.92358 0.92413 1.24941 0.95361 0.96390 0.97472 1.69945 1.38483 1.14350 1.30665 0.86440 0.78103 0.78294 0.84585 1.19783 1.20960 1.20841 1.20247 0.88086 0.85072 0.77535 1.90667 1.13877 1.87263 1.50252 1.21658 0.98967 0.92910 1.03851 1.20357 0.96698 0.87839 1.05656 1.20069 0.98864 0.98116 0.91123 1.21120 0.98115 0.94879 0.97548 1.21079 0.97307 0.95607 0.97758 1.21060 1.02478 1.01352 0.90520 1.17717 1.01389 0.93407 0.82863 1.91528 1.87864 1.85386 1.46149 1.17624 1.02424 0.92268 0.82774 1.91560 1.92140 1.81107 1.45323 0.93733 0.90774 0.92462 0.95024 0.93812 0.92782 0.89412 0.89326 0.89062 0.89349 0.84045 0.84259 0.83919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 10.24 59.84 0.61 1.93 16 2 N -0.60 -12.85 2.86 -182.95 -0.52 -13.37 16 3 C 0.24 6.45 5.16 -5.19 -0.03 6.43 16 4 C -0.53 -15.14 9.39 -34.44 -0.32 -15.47 16 5 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 7 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 8 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 9 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 C 0.50 10.37 7.67 -10.98 -0.08 10.28 16 13 O -0.54 -13.50 15.56 5.56 0.09 -13.41 16 14 C -0.13 -1.93 4.23 -27.88 -0.12 -2.05 16 15 C -0.07 -0.91 4.41 -27.88 -0.12 -1.04 16 16 C -0.08 -0.90 5.14 -104.57 -0.54 -1.44 16 17 C -0.10 -0.82 9.68 -39.58 -0.38 -1.20 16 18 C -0.10 -0.68 10.04 -39.58 -0.40 -1.08 16 19 C -0.14 -1.08 10.02 -39.53 -0.40 -1.47 16 20 C 0.07 0.73 7.31 -39.37 -0.29 0.44 16 21 F -0.13 -1.59 17.18 2.25 0.04 -1.55 16 22 C 0.07 0.86 7.25 -39.37 -0.29 0.58 16 23 F -0.12 -1.81 16.48 2.25 0.04 -1.77 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 26 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 27 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 28 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.09 1.22 7.40 -51.93 -0.38 0.83 16 31 H 0.09 1.03 8.11 -51.93 -0.42 0.61 16 32 H 0.09 1.18 8.01 -51.93 -0.42 0.77 16 33 H 0.09 1.38 7.75 -51.93 -0.40 0.97 16 34 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 35 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 36 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 LS Contribution 321.93 15.07 4.85 4.85 Total: -1.00 -34.01 321.93 -6.66 -40.67 By element: Atomic # 1 Polarization: 0.38 SS G_CDS: -4.42 Total: -4.04 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -2.45 Total: -2.43 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.21 Total: -39.46 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.09 Total: -13.41 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.08 Total: -3.32 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.01 -6.66 -40.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299559656.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.615 kcal (2) G-P(sol) polarization free energy of solvation -34.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds