Wall clock time and date at job start Tue Mar 31 2020 05:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45204 * 109.47080 * 2 1 4 4 C 1.34642 * 117.00149 * 179.97438 * 3 2 1 5 5 O 1.21397 * 120.00011 * 0.02562 * 4 3 2 6 6 C 1.48370 * 119.99781 * 179.97438 * 4 3 2 7 7 N 1.30686 * 126.41050 * 0.02562 * 6 4 3 8 8 O 1.21288 * 110.10580 * 179.70110 * 7 6 4 9 9 C 1.33701 * 110.01860 * 0.47123 * 8 7 6 10 10 C 1.50700 * 126.44383 * 179.79239 * 9 8 7 11 11 N 1.46901 * 109.47327 * 269.69165 * 10 9 8 12 12 C 1.46894 * 111.00123 * 293.95332 * 11 10 9 13 13 C 1.46902 * 110.99644 * 169.99950 * 11 10 9 14 14 H 1.08996 * 109.47149 * 309.99327 * 13 11 10 15 15 C 1.52997 * 109.47094 * 70.00221 * 13 11 10 16 16 C 1.50706 * 109.46577 * 190.00011 * 13 11 10 17 17 H 1.07999 * 120.00196 * 359.97438 * 16 13 11 18 18 C 1.37879 * 119.99394 * 180.02562 * 16 13 11 19 19 N 1.31514 * 120.00338 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 119.99424 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.47474 * 90.00322 * 20 18 16 22 22 H 1.48510 * 109.47116 * 210.00055 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99887 * 20 18 16 24 24 N 1.30928 * 107.11147 * 359.53518 * 9 8 7 25 25 H 1.08995 * 109.46776 * 299.99914 * 1 2 3 26 26 H 1.08998 * 109.47076 * 60.00329 * 1 2 3 27 27 H 1.09000 * 109.46646 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47228 * 240.00306 * 2 1 3 29 29 H 1.08998 * 109.47076 * 119.99671 * 2 1 3 30 30 H 1.08997 * 109.46811 * 149.69160 * 10 9 8 31 31 H 1.09000 * 109.46771 * 29.69303 * 10 9 8 32 32 H 1.09007 * 109.47149 * 296.05065 * 12 11 10 33 33 H 1.09002 * 109.47016 * 56.04488 * 12 11 10 34 34 H 1.08993 * 109.47669 * 176.04501 * 12 11 10 35 35 H 1.09002 * 109.47153 * 299.99508 * 15 13 11 36 36 H 1.09001 * 109.46832 * 179.97438 * 15 13 11 37 37 H 1.09004 * 109.47261 * 59.99681 * 15 13 11 38 38 H 0.96996 * 119.99730 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5455 0.0005 5 8 4.0884 0.5827 0.0005 6 6 3.9158 2.9165 0.0000 7 7 3.2404 4.0353 -0.0005 8 8 3.9999 4.9809 0.0051 9 6 5.2659 4.5511 -0.0005 10 6 6.5033 5.4113 -0.0008 11 7 6.9055 5.6902 -1.3859 12 6 7.3339 4.4614 -2.0673 13 6 7.9592 6.7127 -1.4323 14 1 7.6596 7.5708 -0.8306 15 6 9.2603 6.1298 -0.8773 16 6 8.1726 7.1495 -2.8588 17 1 7.5847 6.7111 -3.6516 18 6 9.1193 8.1082 -3.1518 19 7 9.8363 8.6410 -2.1866 20 14 9.3834 8.6501 -4.9198 21 1 8.4893 9.7958 -5.2253 22 1 10.7979 9.0631 -5.1050 23 1 9.0732 7.5224 -5.8349 24 7 5.2284 3.2424 0.0000 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8933 -0.5137 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 7.3095 4.8881 0.5132 31 1 6.2936 6.3496 0.5126 32 1 8.2252 4.0671 -1.5792 33 1 6.5352 3.7213 -2.0180 34 1 7.5591 4.6839 -3.1103 35 1 9.1059 5.8138 0.1544 36 1 10.0422 6.8884 -0.9122 37 1 9.5598 5.2717 -1.4791 38 1 10.5026 9.3151 -2.3928 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000314535392.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:31 Heat of formation + Delta-G solvation = 2.609289 kcal Electronic energy + Delta-G solvation = -22057.927572 eV Core-core repulsion = 18519.114504 eV Total energy + Delta-G solvation = -3538.813068 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.74462 -40.67821 -37.66090 -37.09494 -35.69578 -33.54158 -32.44730 -31.90189 -29.08576 -27.57673 -26.46209 -25.32243 -24.42889 -23.55717 -22.77759 -21.30425 -19.59014 -18.36795 -18.16205 -17.67792 -16.87341 -16.53500 -16.29792 -15.39263 -14.67393 -14.51964 -14.46402 -14.11826 -13.85559 -13.22612 -13.09161 -12.63342 -12.57781 -12.45094 -12.03121 -11.88928 -11.71209 -11.36916 -11.25416 -11.18783 -11.06254 -10.94946 -10.88831 -10.79603 -10.64131 -10.22864 -10.14386 -9.95593 -9.03790 -8.46194 -7.50002 -6.09201 -4.13176 0.61380 1.45664 1.75823 2.62210 2.73288 3.28545 3.35275 3.38730 3.64750 3.86515 4.35908 4.53475 4.54567 4.72110 4.86167 4.88550 5.21354 5.23769 5.31859 5.38224 5.48769 5.55617 5.73503 5.78323 5.91614 6.04932 6.27591 6.54467 6.70222 6.79141 6.93121 7.20223 7.22376 7.55942 7.69859 7.89042 7.94499 8.18981 8.38247 8.91582 9.52183 10.97894 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.035096 B = 0.003163 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.617141 B = 8848.925083 C = 9007.253968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 O -0.340 6.340 4 C 0.569 3.431 5 O -0.466 6.466 6 C 0.137 3.863 7 N -0.328 5.328 8 O 0.112 5.888 9 C 0.226 3.774 10 C 0.133 3.867 11 N -0.529 5.529 12 C 0.028 3.972 13 C 0.214 3.786 14 H 0.047 0.953 15 C -0.177 4.177 16 C -0.501 4.501 17 H 0.064 0.936 18 C 0.060 3.940 19 N -0.893 5.893 20 Si 0.899 3.101 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.274 1.274 24 N -0.444 5.444 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.113 0.887 32 H 0.030 0.970 33 H 0.044 0.956 34 H 0.078 0.922 35 H 0.009 0.991 36 H 0.092 0.908 37 H 0.036 0.964 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.291 -11.946 6.269 18.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.010 4.010 3 O -0.255 6.255 4 C 0.407 3.593 5 O -0.348 6.348 6 C -0.134 4.134 7 N -0.032 5.032 8 O 0.041 5.959 9 C 0.006 3.994 10 C 0.003 3.997 11 N -0.255 5.255 12 C -0.121 4.121 13 C 0.109 3.891 14 H 0.064 0.936 15 C -0.236 4.236 16 C -0.540 4.540 17 H 0.082 0.918 18 C -0.141 4.141 19 N -0.532 5.532 20 Si 0.727 3.273 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.199 1.199 24 N -0.178 5.178 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.131 0.869 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.028 0.972 36 H 0.111 0.889 37 H 0.055 0.945 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.099 -12.487 6.043 19.780 hybrid contribution 1.049 -0.033 -0.544 1.182 sum -13.051 -12.520 5.498 18.902 Atomic orbital electron populations 1.21824 0.91959 1.03238 1.03951 1.23221 0.95772 0.78798 1.03239 1.86576 1.21789 1.33423 1.83758 1.18687 0.81283 0.85391 0.73919 1.90899 1.60508 1.40072 1.43344 1.24004 0.87517 0.93412 1.08445 1.75040 1.17231 0.95495 1.15435 1.85368 1.16008 1.30989 1.63548 1.29326 0.88574 0.89087 0.92429 1.20777 0.86241 0.97058 0.95654 1.62483 1.43442 1.10524 1.09017 1.22358 0.98137 0.90843 1.00723 1.19411 0.83920 0.87881 0.97918 0.93561 1.22464 1.03841 1.01628 0.95648 1.21033 1.19347 1.21576 0.92001 0.91794 1.24902 0.95674 0.96117 0.97445 1.69865 1.23735 1.28139 1.31500 0.86482 0.77207 0.78982 0.84645 1.20621 1.21340 1.19936 1.72089 1.15728 1.10714 1.19311 0.91225 0.91157 0.89775 0.90550 0.90606 0.89899 0.86880 0.95155 0.93692 0.90310 0.97185 0.88907 0.94539 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.29 37.16 0.38 -0.54 16 2 C 0.06 0.55 6.19 37.16 0.23 0.78 16 3 O -0.34 -4.27 10.23 -40.34 -0.41 -4.68 16 4 C 0.57 8.55 7.99 34.90 0.28 8.83 16 5 O -0.47 -7.73 16.89 -19.19 -0.32 -8.06 16 6 C 0.14 2.23 8.04 -156.18 -1.26 0.97 16 7 N -0.33 -5.21 12.20 30.92 0.38 -4.83 16 8 O 0.11 1.74 11.29 17.96 0.20 1.94 16 9 C 0.23 3.58 7.12 -13.00 -0.09 3.49 16 10 C 0.13 2.10 5.16 -4.98 -0.03 2.07 16 11 N -0.53 -10.37 4.69 -237.73 -1.12 -11.48 16 12 C 0.03 0.53 8.64 60.06 0.52 1.05 16 13 C 0.21 4.87 2.31 -68.86 -0.16 4.71 16 14 H 0.05 1.12 7.93 -51.93 -0.41 0.71 16 15 C -0.18 -3.88 8.22 37.16 0.31 -3.57 16 16 C -0.50 -12.87 7.97 -34.44 -0.27 -13.15 16 17 H 0.06 1.67 7.10 -52.49 -0.37 1.30 16 18 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 19 N -0.89 -24.05 11.32 55.43 0.63 -23.42 16 20 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 N -0.44 -7.54 10.75 -9.94 -0.11 -7.65 16 25 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.08 1.26 7.06 -51.93 -0.37 0.89 16 31 H 0.11 1.56 7.93 -51.93 -0.41 1.14 16 32 H 0.03 0.57 6.21 -51.92 -0.32 0.24 16 33 H 0.04 0.82 6.54 -51.93 -0.34 0.48 16 34 H 0.08 1.60 6.86 -51.93 -0.36 1.24 16 35 H 0.01 0.18 6.91 -51.93 -0.36 -0.18 16 36 H 0.09 2.29 6.07 -51.93 -0.32 1.97 16 37 H 0.04 0.79 6.33 -51.93 -0.33 0.46 16 38 H 0.26 6.77 8.31 -40.82 -0.34 6.44 16 LS Contribution 323.42 15.07 4.87 4.87 Total: -1.00 -28.73 323.42 -5.92 -34.65 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: -4.83 Total: -3.05 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -0.19 Total: 6.12 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: -0.22 Total: -47.38 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: -0.53 Total: -10.79 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.73 -5.92 -34.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000314535392.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.260 kcal (2) G-P(sol) polarization free energy of solvation -28.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds