Wall clock time and date at job start Tue Mar 31 2020 06:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86802 * 119.99819 * 2 1 4 4 H 1.48504 * 109.46813 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47227 * 299.99864 * 3 2 1 6 6 H 1.48494 * 109.47012 * 60.00244 * 3 2 1 7 7 C 1.38954 * 119.99908 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99860 * 191.48337 * 7 2 1 9 9 N 1.37095 * 119.99982 * 11.76357 * 7 2 1 10 10 C 1.34774 * 120.00538 * 48.08963 * 9 7 2 11 11 O 1.21293 * 119.99491 * 3.92735 * 10 9 7 12 12 C 1.50700 * 120.00367 * 183.91471 * 10 9 7 13 13 H 1.08998 * 109.39226 * 320.52527 * 12 10 9 14 14 C 1.52581 * 109.39103 * 200.81853 * 12 10 9 15 15 C 1.52578 * 110.72608 * 169.17933 * 14 12 10 16 16 C 1.53104 * 109.95629 * 70.67319 * 15 14 12 17 17 S 1.81746 * 108.84073 * 296.97840 * 16 15 14 18 18 C 1.53102 * 109.38470 * 80.32751 * 12 10 9 19 19 C 1.46500 * 119.99777 * 228.09544 * 9 7 2 20 20 C 1.54272 * 110.03287 * 51.31706 * 19 9 7 21 21 C 1.54967 * 104.16018 * 217.13564 * 20 19 9 22 22 C 1.54894 * 102.77681 * 37.88681 * 21 20 19 23 23 C 1.53877 * 110.03159 * 294.10107 * 19 9 7 24 24 H 0.97005 * 119.99707 * 4.96408 * 1 2 3 25 25 H 1.09006 * 109.22495 * 289.50039 * 14 12 10 26 26 H 1.09003 * 109.22696 * 48.85713 * 14 12 10 27 27 H 1.08997 * 109.39010 * 310.52906 * 15 14 12 28 28 H 1.08994 * 109.39572 * 190.82248 * 15 14 12 29 29 H 1.09000 * 109.57540 * 177.16912 * 16 15 14 30 30 H 1.08998 * 109.56988 * 56.78399 * 16 15 14 31 31 H 1.09000 * 109.57240 * 302.97711 * 18 12 10 32 32 H 1.08997 * 109.57682 * 63.36315 * 18 12 10 33 33 H 1.09002 * 110.02044 * 172.70628 * 19 9 7 34 34 H 1.09002 * 110.48268 * 335.78285 * 20 19 9 35 35 H 1.08994 * 110.48638 * 98.42854 * 20 19 9 36 36 H 1.08996 * 110.71999 * 279.57312 * 21 20 19 37 37 H 1.09004 * 110.76523 * 156.21913 * 21 20 19 38 38 H 1.08993 * 110.48574 * 203.40287 * 22 21 20 39 39 H 1.09004 * 110.48545 * 80.75700 * 22 21 20 40 40 H 1.08999 * 110.02841 * 238.56377 * 23 19 9 41 41 H 1.08992 * 110.03053 * 359.97438 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8894 2.3964 -1.2124 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0727 -1.2128 0.1857 9 7 1.3450 -2.3781 -0.2431 10 6 0.5039 -2.4727 -1.2919 11 8 0.3883 -1.5430 -2.0623 12 6 -0.2926 -3.7337 -1.5078 13 1 0.3298 -4.5986 -1.2782 14 6 -0.7405 -3.8068 -2.9645 15 6 -1.3146 -5.1838 -3.2844 16 6 -2.6660 -5.3614 -2.5871 17 16 -2.4118 -5.2944 -0.7887 18 6 -1.5143 -3.7272 -0.5851 19 6 1.5497 -3.5305 0.6379 20 6 1.3482 -3.1133 2.1094 21 6 2.4154 -3.9273 2.8838 22 6 3.6278 -3.9069 1.9200 23 6 2.9984 -4.0353 0.5175 24 1 -0.4850 0.8370 -0.0727 25 1 -1.5035 -3.0493 -3.1439 26 1 0.1143 -3.6148 -3.6130 27 1 -0.6247 -5.9530 -2.9376 28 1 -1.4483 -5.2788 -4.3620 29 1 -3.0937 -6.3262 -2.8598 30 1 -3.3413 -4.5614 -2.8905 31 1 -1.1894 -3.6243 0.4502 32 1 -2.1672 -2.8954 -0.8494 33 1 0.8536 -4.3278 0.3772 34 1 1.5225 -2.0441 2.2299 35 1 0.3463 -3.3779 2.4471 36 1 2.0737 -4.9484 3.0531 37 1 2.6635 -3.4404 3.8270 38 1 4.2886 -4.7503 2.1203 39 1 4.1707 -2.9660 2.0097 40 1 3.0052 -5.0778 0.1992 41 1 3.5489 -3.4231 -0.1967 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336344763.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:09 Heat of formation + Delta-G solvation = -48.637314 kcal Electronic energy + Delta-G solvation = -21838.742157 eV Core-core repulsion = 18844.000084 eV Total energy + Delta-G solvation = -2994.742073 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.21714 -37.12340 -35.57481 -33.29283 -31.91629 -30.81030 -28.04393 -26.90625 -26.80596 -25.13264 -22.95589 -20.99367 -20.05541 -19.75307 -18.70448 -16.93557 -16.03110 -15.78343 -15.23231 -14.75257 -14.62293 -14.29202 -13.88894 -13.61875 -13.32672 -13.02593 -12.78184 -12.70269 -12.40304 -12.10870 -11.42960 -11.17916 -11.08029 -11.04501 -10.87591 -10.78303 -10.60228 -10.55280 -10.49723 -10.43630 -10.33375 -10.18025 -10.05571 -9.68568 -9.48644 -8.68557 -8.03159 -7.43101 -7.05431 -6.08292 -3.89741 2.04284 2.75641 3.29400 3.38367 3.39689 4.18402 4.35379 4.79894 4.93656 5.07842 5.17926 5.19341 5.25174 5.30270 5.42987 5.51639 5.57361 5.67862 5.75887 5.90473 5.94392 5.98786 6.08983 6.11857 6.17430 6.21567 6.24633 6.27647 6.35070 6.44593 6.49893 6.57055 6.63797 6.68909 6.82943 6.97904 7.23701 7.66689 8.33224 9.11113 9.19113 9.67693 10.31575 10.99012 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.015361 B = 0.007441 C = 0.005799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.390428 B = 3761.795782 C = 4827.548487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.068 3.932 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.286 1.286 7 C -0.329 4.329 8 H 0.075 0.925 9 N -0.449 5.449 10 C 0.494 3.506 11 O -0.536 6.536 12 C -0.105 4.105 13 H 0.086 0.914 14 C -0.106 4.106 15 C -0.120 4.120 16 C -0.078 4.078 17 S -0.288 6.288 18 C -0.050 4.050 19 C 0.125 3.875 20 C -0.124 4.124 21 C -0.123 4.123 22 C -0.117 4.117 23 C -0.132 4.132 24 H 0.262 0.738 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.050 0.950 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.052 0.948 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.626 -10.721 -0.020 10.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.212 1.212 7 C -0.457 4.457 8 H 0.093 0.907 9 N -0.171 5.171 10 C 0.279 3.721 11 O -0.414 6.414 12 C -0.129 4.129 13 H 0.104 0.896 14 C -0.144 4.144 15 C -0.159 4.159 16 C -0.226 4.226 17 S -0.061 6.061 18 C -0.199 4.199 19 C 0.020 3.980 20 C -0.162 4.162 21 C -0.161 4.161 22 C -0.154 4.154 23 C -0.171 4.171 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.116 0.884 30 H 0.099 0.901 31 H 0.125 0.875 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.206 -10.852 0.428 10.927 hybrid contribution 0.618 1.689 -0.798 1.967 sum -0.588 -9.163 -0.370 9.190 Atomic orbital electron populations 1.69812 1.06225 1.27310 1.44223 1.25273 0.94911 0.99210 0.94673 0.86252 0.79879 0.83176 0.77425 1.19620 1.20861 1.21221 1.18845 0.91791 0.83078 1.51944 0.90725 1.43344 1.41589 1.10220 1.21948 1.19741 0.82927 0.87387 0.82045 1.90508 1.65976 1.39588 1.45347 1.21502 0.96108 0.99799 0.95450 0.89633 1.21278 1.01840 0.95823 0.95492 1.21754 0.95353 0.98658 1.00127 1.23405 1.00545 1.05187 0.93505 1.86626 1.75941 1.33167 1.10402 1.23385 0.97834 0.94952 1.03687 1.21782 0.94977 0.89926 0.91283 1.22633 0.97032 1.02439 0.94082 1.22461 0.96307 0.99431 0.97907 1.22254 0.97171 1.00852 0.95171 1.22501 0.97388 0.99795 0.97408 0.92773 0.91292 0.90859 0.90901 0.91112 0.88382 0.90059 0.87501 0.89340 0.91232 0.88891 0.93073 0.92459 0.92342 0.92903 0.91680 0.92896 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.02 11.77 55.50 0.65 -23.37 16 2 C 0.07 1.86 4.61 -17.46 -0.08 1.78 16 3 Si 0.91 21.52 29.57 -169.99 -5.03 16.49 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.33 -8.62 7.11 -14.93 -0.11 -8.73 16 8 H 0.08 1.93 7.56 -52.49 -0.40 1.54 16 9 N -0.45 -10.62 2.39 -106.54 -0.25 -10.87 16 10 C 0.49 11.94 5.94 -10.99 -0.07 11.87 16 11 O -0.54 -15.28 14.28 5.55 0.08 -15.20 16 12 C -0.10 -1.98 1.51 -91.93 -0.14 -2.12 16 13 H 0.09 1.51 6.46 -51.93 -0.34 1.17 16 14 C -0.11 -1.81 4.29 -27.16 -0.12 -1.92 16 15 C -0.12 -1.56 5.75 -26.89 -0.15 -1.71 16 16 C -0.08 -1.00 6.46 37.21 0.24 -0.76 16 17 S -0.29 -4.44 22.33 -107.50 -2.40 -6.84 16 18 C -0.05 -0.92 5.45 37.21 0.20 -0.71 16 19 C 0.13 2.41 2.68 -66.81 -0.18 2.23 16 20 C -0.12 -2.29 6.40 -25.03 -0.16 -2.45 16 21 C -0.12 -1.85 6.91 -24.69 -0.17 -2.02 16 22 C -0.12 -1.77 6.83 -25.07 -0.17 -1.94 16 23 C -0.13 -2.25 6.30 -25.61 -0.16 -2.41 16 24 H 0.26 7.30 8.32 -40.82 -0.34 6.96 16 25 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 26 H 0.07 1.30 8.04 -51.93 -0.42 0.88 16 27 H 0.07 0.92 8.05 -51.93 -0.42 0.51 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.11 2.05 7.24 -51.93 -0.38 1.68 16 32 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 33 H 0.07 1.26 4.91 -51.93 -0.26 1.00 16 34 H 0.09 2.03 6.78 -51.93 -0.35 1.67 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 1.37 7.38 -51.93 -0.38 0.99 16 LS Contribution 326.13 15.07 4.91 4.91 Total: -1.00 -29.95 326.13 -9.81 -39.76 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -6.72 Total: 4.01 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -1.06 Total: -8.89 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.40 Total: -34.24 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: 0.08 Total: -15.20 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Atomic # 16 Polarization: -4.44 SS G_CDS: -2.40 Total: -6.84 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.95 -9.81 -39.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336344763.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.876 kcal (2) G-P(sol) polarization free energy of solvation -29.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds