Wall clock time and date at job start Tue Mar 31 2020 06:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86802 * 119.99819 * 2 1 4 4 H 1.48504 * 109.46813 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47227 * 299.99864 * 3 2 1 6 6 H 1.48494 * 109.47012 * 60.00244 * 3 2 1 7 7 C 1.38954 * 119.99908 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99860 * 191.48337 * 7 2 1 9 9 N 1.37095 * 119.99982 * 11.76357 * 7 2 1 10 10 C 1.34774 * 120.00538 * 48.08963 * 9 7 2 11 11 O 1.21293 * 119.99491 * 3.92735 * 10 9 7 12 12 C 1.50700 * 120.00367 * 183.91471 * 10 9 7 13 13 H 1.08998 * 109.39226 * 320.52527 * 12 10 9 14 14 C 1.52581 * 109.39103 * 200.81853 * 12 10 9 15 15 C 1.52578 * 110.72608 * 169.17933 * 14 12 10 16 16 C 1.53104 * 109.95629 * 70.67319 * 15 14 12 17 17 S 1.81746 * 108.84073 * 296.97840 * 16 15 14 18 18 C 1.53102 * 109.38470 * 80.32751 * 12 10 9 19 19 C 1.46500 * 119.99777 * 228.09544 * 9 7 2 20 20 C 1.54272 * 110.03287 * 51.31706 * 19 9 7 21 21 C 1.54967 * 104.16018 * 217.13564 * 20 19 9 22 22 C 1.54894 * 102.77681 * 37.88681 * 21 20 19 23 23 C 1.53877 * 110.03159 * 294.10107 * 19 9 7 24 24 H 0.97005 * 119.99707 * 4.96408 * 1 2 3 25 25 H 1.09006 * 109.22495 * 289.50039 * 14 12 10 26 26 H 1.09003 * 109.22696 * 48.85713 * 14 12 10 27 27 H 1.08997 * 109.39010 * 310.52906 * 15 14 12 28 28 H 1.08994 * 109.39572 * 190.82248 * 15 14 12 29 29 H 1.09000 * 109.57540 * 177.16912 * 16 15 14 30 30 H 1.08998 * 109.56988 * 56.78399 * 16 15 14 31 31 H 1.09000 * 109.57240 * 302.97711 * 18 12 10 32 32 H 1.08997 * 109.57682 * 63.36315 * 18 12 10 33 33 H 1.09002 * 110.02044 * 172.70628 * 19 9 7 34 34 H 1.09002 * 110.48268 * 335.78285 * 20 19 9 35 35 H 1.08994 * 110.48638 * 98.42854 * 20 19 9 36 36 H 1.08996 * 110.71999 * 279.57312 * 21 20 19 37 37 H 1.09004 * 110.76523 * 156.21913 * 21 20 19 38 38 H 1.08993 * 110.48574 * 203.40287 * 22 21 20 39 39 H 1.09004 * 110.48545 * 80.75700 * 22 21 20 40 40 H 1.08999 * 110.02841 * 238.56377 * 23 19 9 41 41 H 1.08992 * 110.03053 * 359.97438 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8894 2.3964 -1.2124 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0727 -1.2128 0.1857 9 7 1.3450 -2.3781 -0.2431 10 6 0.5039 -2.4727 -1.2919 11 8 0.3883 -1.5430 -2.0623 12 6 -0.2926 -3.7337 -1.5078 13 1 0.3298 -4.5986 -1.2782 14 6 -0.7405 -3.8068 -2.9645 15 6 -1.3146 -5.1838 -3.2844 16 6 -2.6660 -5.3614 -2.5871 17 16 -2.4118 -5.2944 -0.7887 18 6 -1.5143 -3.7272 -0.5851 19 6 1.5497 -3.5305 0.6379 20 6 1.3482 -3.1133 2.1094 21 6 2.4154 -3.9273 2.8838 22 6 3.6278 -3.9069 1.9200 23 6 2.9984 -4.0353 0.5175 24 1 -0.4850 0.8370 -0.0727 25 1 -1.5035 -3.0493 -3.1439 26 1 0.1143 -3.6148 -3.6130 27 1 -0.6247 -5.9530 -2.9376 28 1 -1.4483 -5.2788 -4.3620 29 1 -3.0937 -6.3262 -2.8598 30 1 -3.3413 -4.5614 -2.8905 31 1 -1.1894 -3.6243 0.4502 32 1 -2.1672 -2.8954 -0.8494 33 1 0.8536 -4.3278 0.3772 34 1 1.5225 -2.0441 2.2299 35 1 0.3463 -3.3779 2.4471 36 1 2.0737 -4.9484 3.0531 37 1 2.6635 -3.4404 3.8270 38 1 4.2886 -4.7503 2.1203 39 1 4.1707 -2.9660 2.0097 40 1 3.0052 -5.0778 0.1992 41 1 3.5489 -3.4231 -0.1967 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336344763.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:08 Heat of formation + Delta-G solvation = -64.651995 kcal Electronic energy + Delta-G solvation = -21839.436605 eV Core-core repulsion = 18844.000084 eV Total energy + Delta-G solvation = -2995.436522 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.93569 -38.61748 -37.08598 -35.16008 -33.64923 -32.36864 -29.42890 -28.42328 -28.17639 -26.99327 -24.47091 -22.40184 -21.37692 -21.29525 -20.42406 -18.54282 -17.74527 -17.28261 -16.93317 -16.32683 -16.02273 -15.83738 -15.35244 -15.13959 -14.97450 -14.35918 -14.23707 -14.08066 -13.90413 -13.62854 -13.26505 -12.89067 -12.71215 -12.50855 -12.40585 -12.38929 -12.24468 -12.09183 -11.92535 -11.84805 -11.78693 -11.69790 -11.35296 -11.22985 -10.75795 -10.70485 -9.91408 -9.01095 -8.68843 -8.15155 -5.99024 0.77577 1.34569 1.40338 1.48234 1.50461 2.29398 2.47924 3.13253 3.25136 3.67113 3.78859 3.85662 3.88854 3.96297 4.06044 4.12700 4.25144 4.36789 4.42586 4.56055 4.61742 4.69565 4.74779 4.80713 4.83082 4.87228 4.95690 4.96207 5.05438 5.12349 5.14541 5.19801 5.30555 5.34721 5.45568 5.56001 5.58955 5.70300 6.28097 7.09862 7.24642 7.74074 8.39330 8.90935 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.015361 B = 0.007441 C = 0.005799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.390428 B = 3761.795782 C = 4827.548487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.018 3.982 3 Si 0.960 3.040 4 H -0.259 1.259 5 H -0.296 1.296 6 H -0.277 1.277 7 C -0.331 4.331 8 H 0.073 0.927 9 N -0.459 5.459 10 C 0.480 3.520 11 O -0.592 6.592 12 C -0.092 4.092 13 H 0.104 0.896 14 C -0.103 4.103 15 C -0.109 4.109 16 C -0.076 4.076 17 S -0.272 6.272 18 C -0.048 4.048 19 C 0.119 3.881 20 C -0.124 4.124 21 C -0.111 4.111 22 C -0.112 4.112 23 C -0.129 4.129 24 H 0.255 0.745 25 H 0.045 0.955 26 H 0.060 0.940 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.133 0.867 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.049 0.951 40 H 0.082 0.918 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.174 -13.873 0.233 13.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.187 4.187 3 Si 0.786 3.214 4 H -0.183 1.183 5 H -0.223 1.223 6 H -0.203 1.203 7 C -0.459 4.459 8 H 0.090 0.910 9 N -0.180 5.180 10 C 0.267 3.733 11 O -0.474 6.474 12 C -0.115 4.115 13 H 0.122 0.878 14 C -0.142 4.142 15 C -0.148 4.148 16 C -0.224 4.224 17 S -0.044 6.044 18 C -0.196 4.196 19 C 0.015 3.985 20 C -0.163 4.163 21 C -0.149 4.149 22 C -0.150 4.150 23 C -0.167 4.167 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.104 0.896 28 H 0.118 0.882 29 H 0.151 0.849 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.068 0.932 40 H 0.101 0.899 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.724 -14.037 0.722 14.074 hybrid contribution 0.469 2.600 -0.905 2.793 sum -0.255 -11.437 -0.183 11.441 Atomic orbital electron populations 1.69932 1.07485 1.27279 1.46418 1.26012 0.95578 1.02192 0.94875 0.85405 0.79431 0.79700 0.76913 1.18251 1.22277 1.20278 1.19005 0.91868 0.84353 1.50668 0.90977 1.43595 1.41036 1.10758 1.22609 1.20666 0.82778 0.88566 0.81321 1.90460 1.67630 1.42008 1.47256 1.21407 0.95781 0.97256 0.97055 0.87804 1.21262 1.00892 0.98176 0.93820 1.21698 0.95327 0.95711 1.02032 1.23590 1.00626 1.07147 0.91009 1.86550 1.75007 1.29614 1.13270 1.23089 0.97499 0.96529 1.02521 1.22051 0.97030 0.88587 0.90792 1.22564 0.98571 1.00614 0.94526 1.22428 0.94575 1.00185 0.97675 1.22246 0.97492 1.01530 0.93743 1.22470 0.95235 1.00800 0.98231 0.93581 0.93601 0.92095 0.89601 0.88235 0.84863 0.90024 0.89029 0.92280 0.89875 0.92882 0.93061 0.89791 0.91227 0.89555 0.93214 0.89922 0.93568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -52.64 11.77 21.67 0.25 -52.38 16 2 C 0.02 1.04 4.61 84.93 0.39 1.43 16 3 Si 0.96 45.79 29.57 68.60 2.03 47.82 16 4 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 6 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 7 C -0.33 -17.97 7.11 84.04 0.60 -17.37 16 8 H 0.07 3.86 7.56 -2.91 -0.02 3.84 16 9 N -0.46 -22.38 2.39 -609.36 -1.45 -23.83 16 10 C 0.48 24.07 5.94 87.66 0.52 24.59 16 11 O -0.59 -35.52 14.28 -3.07 -0.04 -35.56 16 12 C -0.09 -3.47 1.51 -11.65 -0.02 -3.49 16 13 H 0.10 3.51 6.46 -2.39 -0.02 3.49 16 14 C -0.10 -3.48 4.29 30.32 0.13 -3.35 16 15 C -0.11 -2.48 5.75 30.49 0.18 -2.31 16 16 C -0.08 -1.68 6.46 72.02 0.46 -1.21 16 17 S -0.27 -7.76 22.33 -56.49 -1.26 -9.02 16 18 C -0.05 -1.76 5.45 72.02 0.39 -1.37 16 19 C 0.12 4.54 2.68 45.72 0.12 4.66 16 20 C -0.12 -4.59 6.40 31.70 0.20 -4.39 16 21 C -0.11 -3.03 6.91 31.91 0.22 -2.81 16 22 C -0.11 -3.12 6.83 31.67 0.22 -2.90 16 23 C -0.13 -4.17 6.30 31.32 0.20 -3.97 16 24 H 0.25 15.03 8.32 -92.70 -0.77 14.26 16 25 H 0.05 1.73 8.08 -2.38 -0.02 1.71 16 26 H 0.06 2.18 8.04 -2.39 -0.02 2.16 16 27 H 0.09 1.80 8.05 -2.39 -0.02 1.79 16 28 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.09 3.61 7.24 -2.39 -0.02 3.59 16 32 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.08 2.90 4.91 -2.39 -0.01 2.89 16 34 H 0.05 2.39 6.78 -2.39 -0.02 2.37 16 35 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.05 1.73 7.38 -2.39 -0.02 1.71 16 Total: -1.00 -69.49 326.13 4.14 -65.35 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 1.00 Total: 20.12 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: 3.61 Total: -12.49 kcal Atomic # 7 Polarization: -75.01 SS G_CDS: -1.20 Total: -76.21 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -0.04 Total: -35.56 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Atomic # 16 Polarization: -7.76 SS G_CDS: -1.26 Total: -9.02 kcal Total: -69.49 4.14 -65.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336344763.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.701 kcal (2) G-P(sol) polarization free energy of solvation -69.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds