Wall clock time and date at job start Tue Mar 31 2020 06:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99690 * 2 1 4 4 H 1.48502 * 109.47241 * 240.00253 * 3 2 1 5 5 H 1.48497 * 109.47173 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47052 * 120.00423 * 3 2 1 7 7 C 1.38944 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00091 * 161.04581 * 7 2 1 9 9 N 1.37095 * 120.00567 * 341.03974 * 7 2 1 10 10 C 1.34779 * 119.99806 * 301.68086 * 9 7 2 11 11 O 1.21297 * 119.99903 * 184.16565 * 10 9 7 12 12 C 1.50701 * 120.00140 * 4.16550 * 10 9 7 13 13 H 1.08997 * 109.30918 * 37.68934 * 12 10 9 14 14 C 1.52581 * 109.38855 * 157.44657 * 12 10 9 15 15 C 1.52588 * 110.68855 * 190.80420 * 14 12 10 16 16 C 1.53103 * 109.95429 * 289.34008 * 15 14 12 17 17 S 1.81748 * 108.83587 * 63.02691 * 16 15 14 18 18 C 1.53021 * 109.32653 * 277.95069 * 12 10 9 19 19 C 1.46499 * 120.00264 * 121.67117 * 9 7 2 20 20 C 1.54267 * 110.03011 * 59.49549 * 19 9 7 21 21 C 1.54964 * 104.16125 * 217.13658 * 20 19 9 22 22 C 1.54891 * 102.77749 * 37.88864 * 21 20 19 23 23 C 1.53875 * 110.03495 * 302.28131 * 19 9 7 24 24 H 0.96996 * 120.00220 * 5.04216 * 1 2 3 25 25 H 1.08995 * 109.22596 * 70.50298 * 14 12 10 26 26 H 1.08998 * 109.22395 * 311.09687 * 14 12 10 27 27 H 1.08994 * 109.39154 * 49.49211 * 15 14 12 28 28 H 1.09004 * 109.38726 * 169.19813 * 15 14 12 29 29 H 1.08994 * 109.57402 * 182.83020 * 16 15 14 30 30 H 1.08995 * 109.57367 * 303.22305 * 16 15 14 31 31 H 1.08999 * 109.58844 * 57.00383 * 18 12 10 32 32 H 1.08997 * 109.59352 * 296.59835 * 18 12 10 33 33 H 1.08996 * 110.01985 * 180.88432 * 19 9 7 34 34 H 1.09002 * 110.48515 * 335.78741 * 20 19 9 35 35 H 1.09002 * 110.48819 * 98.42523 * 20 19 9 36 36 H 1.08992 * 110.71984 * 279.57413 * 21 20 19 37 37 H 1.08999 * 110.76462 * 156.22360 * 21 20 19 38 38 H 1.08992 * 110.48768 * 203.40346 * 22 21 20 39 39 H 1.09006 * 110.59652 * 80.81475 * 22 21 20 40 40 H 1.08994 * 110.03172 * 238.57056 * 23 19 9 41 41 H 1.09006 * 110.02847 * 359.97438 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1017 1.6965 -1.2125 5 1 1.2830 2.7464 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0450 -1.2285 -0.3044 9 7 1.3793 -2.3586 0.3847 10 6 0.8328 -2.4508 1.6133 11 8 0.3426 -3.4972 1.9820 12 6 0.8308 -1.2538 2.5289 13 1 0.6549 -0.3519 1.9426 14 6 -0.2792 -1.4098 3.5641 15 6 -0.4848 -0.1086 4.3342 16 6 0.7058 0.1422 5.2635 17 16 2.2035 0.3505 4.2551 18 6 2.1878 -1.1490 3.2283 19 6 1.3003 -3.4929 -0.5391 20 6 2.7190 -3.9544 -0.9317 21 6 2.5892 -4.3511 -2.4240 22 6 1.6179 -3.2803 -2.9800 23 6 0.6003 -3.0648 -1.8408 24 1 -0.4850 0.8367 -0.0738 25 1 -0.0096 -2.2017 4.2628 26 1 -1.2067 -1.6778 3.0582 27 1 -0.5748 0.7184 3.6299 28 1 -1.3974 -0.1789 4.9262 29 1 0.5297 1.0460 5.8468 30 1 0.8318 -0.7084 5.9332 31 1 2.9799 -1.0890 2.4820 32 1 2.3427 -2.0247 3.8585 33 1 0.7554 -4.3149 -0.0750 34 1 3.4317 -3.1380 -0.8147 35 1 3.0201 -4.8137 -0.3325 36 1 2.1614 -5.3488 -2.5220 37 1 3.5557 -4.2932 -2.9247 38 1 1.1164 -3.6481 -3.8751 39 1 2.1509 -2.3542 -3.1957 40 1 -0.2840 -3.6796 -2.0088 41 1 0.3189 -2.0132 -1.7850 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336344764.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:11 Heat of formation + Delta-G solvation = -52.962003 kcal Electronic energy + Delta-G solvation = -21977.419298 eV Core-core repulsion = 18982.489693 eV Total energy + Delta-G solvation = -2994.929606 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.23795 -37.11346 -35.30713 -34.18524 -31.49699 -30.92267 -27.91291 -27.04108 -26.63953 -24.84511 -23.04997 -20.92535 -20.09171 -19.22655 -18.91347 -17.00462 -15.79855 -15.72646 -15.24178 -14.67150 -14.56690 -14.36460 -13.92537 -13.51180 -13.36027 -12.90840 -12.71563 -12.59353 -12.35215 -11.99373 -11.58049 -11.28898 -11.14700 -10.93051 -10.84855 -10.75967 -10.64113 -10.47735 -10.43960 -10.30386 -10.22809 -10.13063 -9.88241 -9.60601 -9.30341 -8.74434 -8.15027 -7.27591 -7.15937 -6.43434 -4.29403 2.25120 2.97844 3.15789 3.23511 3.30417 3.97659 4.15508 4.75127 4.85489 5.13997 5.25167 5.35839 5.40522 5.47332 5.59060 5.66842 5.78686 5.90666 5.93808 6.13445 6.16011 6.22101 6.25036 6.27200 6.34293 6.42849 6.48655 6.51730 6.55633 6.60372 6.65870 6.78196 6.88520 6.98459 7.12166 7.21892 7.36971 7.45410 8.06242 8.59363 8.90880 9.56809 10.00503 10.59302 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.018819 B = 0.007499 C = 0.006335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.470478 B = 3733.169876 C = 4419.032514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.256 1.256 7 C -0.344 4.344 8 H 0.080 0.920 9 N -0.443 5.443 10 C 0.523 3.477 11 O -0.611 6.611 12 C -0.105 4.105 13 H 0.139 0.861 14 C -0.104 4.104 15 C -0.119 4.119 16 C -0.079 4.079 17 S -0.284 6.284 18 C -0.051 4.051 19 C 0.133 3.867 20 C -0.128 4.128 21 C -0.121 4.121 22 C -0.116 4.116 23 C -0.126 4.126 24 H 0.273 0.727 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.115 0.885 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.049 0.951 39 H 0.064 0.936 40 H 0.044 0.956 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.002 -0.222 2.148 2.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.144 4.144 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.180 1.180 7 C -0.472 4.472 8 H 0.098 0.902 9 N -0.163 5.163 10 C 0.311 3.689 11 O -0.497 6.497 12 C -0.127 4.127 13 H 0.157 0.843 14 C -0.142 4.142 15 C -0.158 4.158 16 C -0.227 4.227 17 S -0.057 6.057 18 C -0.199 4.199 19 C 0.029 3.971 20 C -0.166 4.166 21 C -0.159 4.159 22 C -0.154 4.154 23 C -0.164 4.164 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.114 0.886 30 H 0.096 0.904 31 H 0.133 0.867 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.358 0.248 2.400 3.373 hybrid contribution -0.541 -0.018 -0.231 0.588 sum 1.817 0.230 2.169 2.839 Atomic orbital electron populations 1.69936 1.06124 1.28339 1.44536 1.25533 0.95074 0.99860 0.93967 0.86536 0.80251 0.81710 0.79851 1.19917 1.20697 1.17977 1.18990 0.95190 0.83455 1.49568 0.90217 1.43344 1.51056 1.12302 1.09552 1.20249 0.78580 0.87751 0.82326 1.90490 1.51322 1.31495 1.76351 1.21590 0.92504 1.02685 0.95942 0.84337 1.21265 0.99720 0.95852 0.97381 1.21722 0.96383 0.99578 0.98111 1.23395 0.95388 1.04726 0.99190 1.86640 1.35074 1.35698 1.48306 1.23300 1.01915 0.95014 0.99681 1.21581 0.94415 0.90549 0.90545 1.22654 0.98783 1.00282 0.94890 1.22433 0.98765 0.98353 0.96338 1.22260 0.97263 0.98488 0.97378 1.22385 0.96507 1.03942 0.93550 0.91714 0.92466 0.91179 0.90696 0.91528 0.88602 0.90368 0.86708 0.90991 0.90731 0.90614 0.92978 0.92419 0.92528 0.93181 0.91719 0.93728 0.88543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.13 11.77 55.50 0.65 -20.48 16 2 C 0.06 1.48 3.27 -17.47 -0.06 1.42 16 3 Si 0.89 18.89 29.60 -169.99 -5.03 13.86 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.34 -8.08 6.16 -14.94 -0.09 -8.17 16 8 H 0.08 1.86 6.92 -52.48 -0.36 1.50 16 9 N -0.44 -10.49 2.31 -106.54 -0.25 -10.74 16 10 C 0.52 12.84 6.35 -10.98 -0.07 12.77 16 11 O -0.61 -16.30 15.56 5.54 0.09 -16.22 16 12 C -0.10 -2.28 1.54 -91.97 -0.14 -2.42 16 13 H 0.14 3.24 4.04 -51.93 -0.21 3.03 16 14 C -0.10 -2.04 4.30 -27.16 -0.12 -2.16 16 15 C -0.12 -1.93 5.75 -26.89 -0.15 -2.08 16 16 C -0.08 -1.18 6.46 37.21 0.24 -0.94 16 17 S -0.28 -5.13 22.33 -107.50 -2.40 -7.53 16 18 C -0.05 -1.00 5.63 37.17 0.21 -0.79 16 19 C 0.13 2.89 3.29 -66.81 -0.22 2.67 16 20 C -0.13 -2.36 6.42 -25.03 -0.16 -2.52 16 21 C -0.12 -1.91 6.91 -24.70 -0.17 -2.08 16 22 C -0.12 -1.98 6.83 -25.07 -0.17 -2.15 16 23 C -0.13 -2.56 6.26 -25.61 -0.16 -2.72 16 24 H 0.27 6.51 8.32 -40.82 -0.34 6.17 16 25 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 26 H 0.07 1.48 8.06 -51.93 -0.42 1.06 16 27 H 0.07 1.30 8.06 -51.93 -0.42 0.88 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.11 2.37 7.27 -51.93 -0.38 1.99 16 32 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.07 1.73 6.95 -51.93 -0.36 1.37 16 34 H 0.08 1.47 6.52 -51.93 -0.34 1.13 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.10 2.27 7.07 -51.93 -0.37 1.90 16 LS Contribution 324.76 15.07 4.89 4.89 Total: -1.00 -26.25 324.76 -9.75 -36.00 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -6.64 Total: 9.39 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -1.07 Total: -9.18 kcal Atomic # 7 Polarization: -31.62 SS G_CDS: 0.41 Total: -31.22 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: 0.09 Total: -16.22 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.86 kcal Atomic # 16 Polarization: -5.13 SS G_CDS: -2.40 Total: -7.53 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -26.25 -9.75 -36.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336344764.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.963 kcal (2) G-P(sol) polarization free energy of solvation -26.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds