Wall clock time and date at job start Tue Mar 31 2020 05:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46496 * 119.99861 * 2 1 4 4 C 1.50700 * 109.47207 * 270.00139 * 3 2 1 5 5 H 1.08001 * 120.00184 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00074 * 180.02562 * 4 3 2 7 7 N 1.31521 * 120.00093 * 180.02562 * 6 4 3 8 8 Si 1.86792 * 120.00064 * 359.97438 * 6 4 3 9 9 H 1.48505 * 109.46720 * 90.00375 * 8 6 4 10 10 H 1.48497 * 109.47497 * 210.00170 * 8 6 4 11 11 H 1.48499 * 109.47263 * 330.00645 * 8 6 4 12 12 C 1.34776 * 119.99921 * 180.02562 * 2 1 3 13 13 O 1.21279 * 119.99851 * 180.02562 * 12 2 1 14 14 C 1.50703 * 119.99991 * 359.97438 * 12 2 1 15 15 C 1.50701 * 109.46951 * 180.02562 * 14 12 2 16 16 C 1.38253 * 119.99890 * 270.01739 * 15 14 12 17 17 C 1.38220 * 120.00051 * 180.02562 * 16 15 14 18 18 C 1.38255 * 119.99697 * 359.95697 * 17 16 15 19 19 C 1.38217 * 120.00132 * 0.07194 * 18 17 16 20 20 C 1.50706 * 119.99801 * 179.97438 * 19 18 17 21 21 F 1.39897 * 109.46875 * 119.94861 * 20 19 18 22 22 F 1.39903 * 109.46738 * 239.95151 * 20 19 18 23 23 C 1.38215 * 119.99815 * 89.99902 * 15 14 12 24 24 H 1.08999 * 109.46751 * 269.99834 * 1 2 3 25 25 H 1.08998 * 109.47400 * 29.99774 * 1 2 3 26 26 H 1.08996 * 109.47242 * 149.99809 * 1 2 3 27 27 H 1.08992 * 109.47658 * 30.00164 * 3 2 1 28 28 H 1.09000 * 109.46804 * 150.00268 * 3 2 1 29 29 H 0.96997 * 120.00082 * 180.02562 * 7 6 4 30 30 H 1.08990 * 109.47329 * 60.00003 * 14 12 2 31 31 H 1.09006 * 109.47198 * 299.99893 * 14 12 2 32 32 H 1.08002 * 120.00348 * 359.97438 * 16 15 14 33 33 H 1.07999 * 120.00153 * 179.97438 * 17 16 15 34 34 H 1.08005 * 119.99804 * 179.97438 * 18 17 16 35 35 H 1.08998 * 109.46840 * 359.94760 * 20 19 18 36 36 H 1.07995 * 120.00164 * 359.72517 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.3456 3.2575 -2.9127 8 14 3.7338 3.9287 -0.2530 9 1 5.1069 3.5068 0.1235 10 1 3.7497 5.3554 -0.6648 11 1 2.8273 3.7595 0.9110 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3854 -2.4723 -0.0005 15 6 2.3647 -3.6177 -0.0005 16 6 2.8141 -4.1429 -1.1978 17 6 3.7120 -5.1938 -1.1979 18 6 4.1612 -5.7192 -0.0005 19 6 3.7113 -5.1946 1.1965 20 6 4.2006 -5.7677 2.5016 21 9 4.8495 -4.7689 3.2353 22 9 3.1124 -6.2528 3.2349 23 6 2.8138 -4.1430 1.1965 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8899 -0.5138 27 1 1.6085 2.0283 0.5138 28 1 3.1499 1.1383 0.5138 29 1 3.8230 4.0830 -3.0900 30 1 0.7584 -2.5299 -0.8902 31 1 0.7590 -2.5303 0.8897 32 1 2.4632 -3.7326 -2.1332 33 1 4.0628 -5.6043 -2.1332 34 1 4.8624 -6.5407 -0.0005 35 1 4.8966 -6.5825 2.3023 36 1 2.4663 -3.7296 2.1317 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344330800.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:56 Heat of formation + Delta-G solvation = -110.948125 kcal Electronic energy + Delta-G solvation = -21705.849935 eV Core-core repulsion = 18018.732382 eV Total energy + Delta-G solvation = -3687.117554 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.06824 -47.05558 -39.82610 -38.55407 -34.94593 -33.24204 -32.47628 -31.66715 -29.08837 -27.38170 -26.17247 -25.75939 -22.80741 -22.06415 -21.11416 -18.55100 -17.45360 -17.28848 -17.21534 -16.96342 -16.41176 -16.14531 -15.39881 -15.34500 -14.53838 -14.20862 -14.00452 -13.89460 -13.43308 -13.14718 -13.09827 -12.94660 -12.65860 -12.45762 -12.31503 -12.01412 -11.96023 -11.75932 -11.51907 -11.15376 -10.91392 -10.85722 -10.51684 -10.14895 -9.55888 -9.20859 -9.03961 -8.68914 -8.59493 -7.71810 -6.09693 -4.08463 1.10166 1.30518 3.29158 3.31931 3.35098 3.37388 3.50356 3.60981 3.95972 4.03006 4.38115 4.39347 4.73976 4.88760 4.93848 4.98478 5.14372 5.24817 5.26765 5.31773 5.48596 5.53106 5.63473 5.80714 5.85619 5.94987 6.14001 6.24572 6.32136 6.53661 6.68159 6.84431 6.94562 7.31751 7.60182 8.22145 8.45840 8.91145 8.97013 9.50767 11.03698 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.021685 B = 0.004014 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.893349 B = 6974.644620 C = 7174.312466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.599 5.599 3 C 0.215 3.785 4 C -0.529 4.529 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.876 3.124 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.507 3.493 13 O -0.532 6.532 14 C -0.105 4.105 15 C -0.056 4.056 16 C -0.081 4.081 17 C -0.121 4.121 18 C -0.092 4.092 19 C -0.174 4.174 20 C 0.314 3.686 21 F -0.199 7.199 22 F -0.203 7.203 23 C -0.066 4.066 24 H 0.046 0.954 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.030 0.970 28 H 0.036 0.964 29 H 0.265 0.735 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.116 0.884 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.085 -18.915 7.752 20.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.332 5.332 3 C 0.095 3.905 4 C -0.567 4.567 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.703 3.297 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.293 3.707 13 O -0.408 6.408 14 C -0.145 4.145 15 C -0.057 4.057 16 C -0.099 4.099 17 C -0.139 4.139 18 C -0.110 4.110 19 C -0.175 4.175 20 C 0.261 3.739 21 F -0.180 7.180 22 F -0.184 7.184 23 C -0.084 4.084 24 H 0.064 0.936 25 H 0.095 0.905 26 H 0.079 0.921 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.120 0.880 31 H 0.116 0.884 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.133 0.867 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.370 -18.720 7.689 20.517 hybrid contribution 0.256 0.839 0.607 1.067 sum -3.113 -17.881 8.296 19.956 Atomic orbital electron populations 1.21683 0.80924 1.03063 1.00512 1.47843 1.06279 1.07058 1.71970 1.19665 0.92481 0.80015 0.98367 1.21323 1.37015 1.07145 0.91245 0.90809 1.24856 0.95206 0.97350 0.95587 1.69897 1.41473 1.23610 1.18661 0.86845 0.80175 0.79730 0.82916 1.19889 1.21039 1.19067 1.20168 0.88119 0.84704 0.77673 1.90702 1.13751 1.87057 1.49322 1.20776 0.97501 0.91397 1.04823 1.19368 0.97782 0.95514 0.93022 1.21203 0.95847 0.94947 0.97882 1.21064 0.97866 0.97112 0.97823 1.20841 0.99064 0.99563 0.91518 1.20214 1.02502 1.00650 0.94093 1.20384 0.82910 0.87386 0.83241 1.93034 1.81501 1.64161 1.79285 1.93000 1.57588 1.88327 1.79496 1.20754 0.95245 0.94184 0.98201 0.93594 0.90503 0.92097 0.95213 0.94567 0.92555 0.88031 0.88404 0.85421 0.85317 0.85570 0.86678 0.85792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.21 10.24 59.85 0.61 1.83 16 2 N -0.60 -12.24 2.86 -182.96 -0.52 -12.76 16 3 C 0.22 5.31 4.23 -5.20 -0.02 5.28 16 4 C -0.53 -15.25 9.94 -34.44 -0.34 -15.59 16 5 H 0.07 2.32 8.06 -52.49 -0.42 1.90 16 6 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 7 N -0.90 -27.77 13.96 55.43 0.77 -26.99 16 8 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 9 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 12 C 0.51 10.22 7.67 -10.98 -0.08 10.13 16 13 O -0.53 -13.21 15.61 5.56 0.09 -13.12 16 14 C -0.10 -1.48 4.38 -29.03 -0.13 -1.61 16 15 C -0.06 -0.82 4.37 -104.62 -0.46 -1.28 16 16 C -0.08 -1.09 9.70 -39.58 -0.38 -1.47 16 17 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 18 C -0.09 -0.99 9.67 -39.58 -0.38 -1.37 16 19 C -0.17 -2.16 5.37 -104.62 -0.56 -2.72 16 20 C 0.31 3.38 5.45 36.01 0.20 3.57 16 21 F -0.20 -2.68 17.26 2.25 0.04 -2.64 16 22 F -0.20 -2.38 17.26 2.25 0.04 -2.34 16 23 C -0.07 -0.93 9.26 -39.58 -0.37 -1.29 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 26 H 0.06 0.72 6.44 -51.93 -0.33 0.38 16 27 H 0.03 0.70 7.13 -51.93 -0.37 0.33 16 28 H 0.04 0.96 6.85 -51.93 -0.36 0.61 16 29 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 30 H 0.10 1.21 7.34 -51.93 -0.38 0.83 16 31 H 0.10 1.12 8.05 -51.93 -0.42 0.70 16 32 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.13 0.93 7.95 -52.48 -0.42 0.51 16 35 H 0.12 0.78 7.88 -51.93 -0.41 0.37 16 36 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 319.35 15.07 4.81 4.81 Total: -1.00 -35.82 319.35 -6.24 -42.06 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -4.39 Total: -1.82 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -2.41 Total: -4.28 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.25 Total: -39.75 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.09 Total: -13.12 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 0.08 Total: -4.98 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.82 -6.24 -42.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344330800.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.891 kcal (2) G-P(sol) polarization free energy of solvation -35.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds