Wall clock time and date at job start Tue Mar 31 2020 05:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46496 * 119.99861 * 2 1 4 4 C 1.50700 * 109.47207 * 270.00139 * 3 2 1 5 5 H 1.08001 * 120.00184 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00074 * 180.02562 * 4 3 2 7 7 N 1.31521 * 120.00093 * 180.02562 * 6 4 3 8 8 Si 1.86792 * 120.00064 * 359.97438 * 6 4 3 9 9 H 1.48505 * 109.46720 * 90.00375 * 8 6 4 10 10 H 1.48497 * 109.47497 * 210.00170 * 8 6 4 11 11 H 1.48499 * 109.47263 * 330.00645 * 8 6 4 12 12 C 1.34776 * 119.99921 * 180.02562 * 2 1 3 13 13 O 1.21279 * 119.99851 * 180.02562 * 12 2 1 14 14 C 1.50703 * 119.99991 * 359.97438 * 12 2 1 15 15 C 1.50701 * 109.46951 * 180.02562 * 14 12 2 16 16 C 1.38253 * 119.99890 * 270.01739 * 15 14 12 17 17 C 1.38220 * 120.00051 * 180.02562 * 16 15 14 18 18 C 1.38255 * 119.99697 * 359.95697 * 17 16 15 19 19 C 1.38217 * 120.00132 * 0.07194 * 18 17 16 20 20 C 1.50706 * 119.99801 * 179.97438 * 19 18 17 21 21 F 1.39897 * 109.46875 * 119.94861 * 20 19 18 22 22 F 1.39903 * 109.46738 * 239.95151 * 20 19 18 23 23 C 1.38215 * 119.99815 * 89.99902 * 15 14 12 24 24 H 1.08999 * 109.46751 * 269.99834 * 1 2 3 25 25 H 1.08998 * 109.47400 * 29.99774 * 1 2 3 26 26 H 1.08996 * 109.47242 * 149.99809 * 1 2 3 27 27 H 1.08992 * 109.47658 * 30.00164 * 3 2 1 28 28 H 1.09000 * 109.46804 * 150.00268 * 3 2 1 29 29 H 0.96997 * 120.00082 * 180.02562 * 7 6 4 30 30 H 1.08990 * 109.47329 * 60.00003 * 14 12 2 31 31 H 1.09006 * 109.47198 * 299.99893 * 14 12 2 32 32 H 1.08002 * 120.00348 * 359.97438 * 16 15 14 33 33 H 1.07999 * 120.00153 * 179.97438 * 17 16 15 34 34 H 1.08005 * 119.99804 * 179.97438 * 18 17 16 35 35 H 1.08998 * 109.46840 * 359.94760 * 20 19 18 36 36 H 1.07995 * 120.00164 * 359.72517 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.3456 3.2575 -2.9127 8 14 3.7338 3.9287 -0.2530 9 1 5.1069 3.5068 0.1235 10 1 3.7497 5.3554 -0.6648 11 1 2.8273 3.7595 0.9110 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3854 -2.4723 -0.0005 15 6 2.3647 -3.6177 -0.0005 16 6 2.8141 -4.1429 -1.1978 17 6 3.7120 -5.1938 -1.1979 18 6 4.1612 -5.7192 -0.0005 19 6 3.7113 -5.1946 1.1965 20 6 4.2006 -5.7677 2.5016 21 9 4.8495 -4.7689 3.2353 22 9 3.1124 -6.2528 3.2349 23 6 2.8138 -4.1430 1.1965 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8899 -0.5138 27 1 1.6085 2.0283 0.5138 28 1 3.1499 1.1383 0.5138 29 1 3.8230 4.0830 -3.0900 30 1 0.7584 -2.5299 -0.8902 31 1 0.7590 -2.5303 0.8897 32 1 2.4632 -3.7326 -2.1332 33 1 4.0628 -5.6043 -2.1332 34 1 4.8624 -6.5407 -0.0005 35 1 4.8966 -6.5825 2.3023 36 1 2.4663 -3.7296 2.1317 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344330800.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:55 Heat of formation + Delta-G solvation = -134.029833 kcal Electronic energy + Delta-G solvation = -21706.850833 eV Core-core repulsion = 18018.732382 eV Total energy + Delta-G solvation = -3688.118451 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.95333 -47.95973 -41.07630 -39.81997 -36.63497 -34.78926 -34.15624 -32.60665 -30.82727 -28.67819 -27.27615 -27.00308 -24.53716 -23.11029 -22.23430 -20.04429 -19.16280 -18.30201 -18.20058 -18.17342 -17.88012 -17.08760 -17.00730 -16.67185 -16.08137 -15.51729 -15.18156 -14.92967 -14.76737 -14.38788 -14.34819 -14.13399 -13.86887 -13.86587 -13.64554 -13.45434 -13.22161 -13.03132 -12.82505 -12.70520 -12.46635 -12.07203 -12.03584 -11.76756 -11.73659 -10.85192 -10.76892 -9.99383 -9.73637 -9.39936 -8.35953 -6.40750 0.15537 0.34929 1.30859 1.35024 1.43236 1.79504 2.28652 2.29835 2.72845 2.80075 2.98633 3.27223 3.50901 3.75873 3.91683 3.99214 4.10597 4.14598 4.27050 4.35954 4.45202 4.54439 4.63047 4.66706 4.80607 4.87909 4.95251 4.97493 5.03906 5.33261 5.39765 5.44154 5.55290 5.60821 5.93262 6.22184 6.60207 6.69000 7.20111 7.41743 8.80957 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.021685 B = 0.004014 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.893349 B = 6974.644620 C = 7174.312466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.609 5.609 3 C 0.223 3.777 4 C -0.536 4.536 5 H 0.030 0.970 6 C 0.012 3.988 7 N -0.945 5.945 8 Si 0.946 3.054 9 H -0.278 1.278 10 H -0.273 1.273 11 H -0.239 1.239 12 C 0.497 3.503 13 O -0.590 6.590 14 C -0.091 4.091 15 C -0.080 4.080 16 C -0.102 4.102 17 C -0.125 4.125 18 C -0.085 4.085 19 C -0.186 4.186 20 C 0.311 3.689 21 F -0.218 7.218 22 F -0.210 7.210 23 C -0.088 4.088 24 H 0.079 0.921 25 H 0.066 0.934 26 H 0.093 0.907 27 H 0.050 0.950 28 H 0.015 0.985 29 H 0.269 0.731 30 H 0.125 0.875 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.156 0.844 34 H 0.168 0.832 35 H 0.165 0.835 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.554 -20.398 9.165 22.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.340 5.340 3 C 0.100 3.900 4 C -0.574 4.574 5 H 0.048 0.952 6 C -0.186 4.186 7 N -0.585 5.585 8 Si 0.769 3.231 9 H -0.204 1.204 10 H -0.198 1.198 11 H -0.162 1.162 12 C 0.286 3.714 13 O -0.471 6.471 14 C -0.130 4.130 15 C -0.081 4.081 16 C -0.120 4.120 17 C -0.143 4.143 18 C -0.102 4.102 19 C -0.187 4.187 20 C 0.258 3.742 21 F -0.200 7.200 22 F -0.192 7.192 23 C -0.106 4.106 24 H 0.098 0.902 25 H 0.084 0.916 26 H 0.112 0.888 27 H 0.068 0.932 28 H 0.033 0.967 29 H 0.078 0.922 30 H 0.143 0.857 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.173 0.827 34 H 0.185 0.815 35 H 0.182 0.818 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.910 -20.222 9.113 22.523 hybrid contribution 0.389 1.209 0.073 1.272 sum -3.521 -19.013 9.186 21.407 Atomic orbital electron populations 1.22014 0.77420 1.04236 1.03044 1.47983 1.08552 1.05830 1.71681 1.19322 0.92645 0.82672 0.95343 1.21558 1.36770 1.06713 0.92371 0.95165 1.25828 0.95292 0.98935 0.98543 1.70043 1.42703 1.24537 1.21187 0.85737 0.79481 0.77903 0.79964 1.20423 1.19794 1.16213 1.21242 0.87862 0.86336 0.75920 1.90658 1.16520 1.88050 1.51856 1.20755 0.97272 0.87616 1.07335 1.19491 0.98865 0.96102 0.93618 1.21443 0.96840 0.96030 0.97688 1.21462 0.96961 0.96341 0.99489 1.21315 0.98625 0.99871 0.90413 1.20556 1.02105 1.00323 0.95702 1.20867 0.83362 0.88022 0.81954 1.92994 1.81837 1.65386 1.79744 1.92981 1.58258 1.88283 1.79644 1.20901 0.96431 0.95376 0.97911 0.90232 0.91559 0.88833 0.93215 0.96709 0.92242 0.85693 0.85308 0.85377 0.82658 0.81458 0.81819 0.86381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.05 10.24 127.77 1.31 3.36 16 2 N -0.61 -24.65 2.86 -851.15 -2.43 -27.08 16 3 C 0.22 11.02 4.23 85.63 0.36 11.38 16 4 C -0.54 -31.83 9.94 25.60 0.25 -31.57 16 5 H 0.03 1.99 8.06 -2.91 -0.02 1.97 16 6 C 0.01 0.72 5.47 84.65 0.46 1.18 16 7 N -0.94 -60.08 13.96 21.45 0.30 -59.79 16 8 Si 0.95 45.11 27.47 68.60 1.88 46.99 16 9 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.24 -10.26 6.54 99.48 0.65 -9.60 16 12 C 0.50 20.12 7.67 87.66 0.67 20.80 16 13 O -0.59 -30.30 15.61 -3.03 -0.05 -30.35 16 14 C -0.09 -2.45 4.38 29.10 0.13 -2.32 16 15 C -0.08 -2.29 4.37 -19.87 -0.09 -2.38 16 16 C -0.10 -2.69 9.70 22.27 0.22 -2.47 16 17 C -0.12 -2.63 10.05 22.27 0.22 -2.40 16 18 C -0.08 -1.59 9.67 22.27 0.22 -1.37 16 19 C -0.19 -4.31 5.37 -19.86 -0.11 -4.41 16 20 C 0.31 6.01 5.45 71.24 0.39 6.40 16 21 F -0.22 -5.68 17.26 44.97 0.78 -4.90 16 22 F -0.21 -4.60 17.26 44.97 0.78 -3.82 16 23 C -0.09 -2.45 9.26 22.27 0.21 -2.24 16 24 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.07 1.96 8.07 -2.39 -0.02 1.95 16 26 H 0.09 1.94 6.44 -2.39 -0.02 1.92 16 27 H 0.05 2.25 7.13 -2.39 -0.02 2.24 16 28 H 0.01 0.80 6.85 -2.39 -0.02 0.78 16 29 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 30 H 0.13 2.74 7.34 -2.39 -0.02 2.72 16 31 H 0.13 2.63 8.05 -2.38 -0.02 2.61 16 32 H 0.13 3.20 8.06 -2.91 -0.02 3.18 16 33 H 0.16 2.33 8.06 -2.91 -0.02 2.30 16 34 H 0.17 1.67 7.95 -2.91 -0.02 1.65 16 35 H 0.16 1.56 7.88 -2.39 -0.02 1.54 16 36 H 0.12 3.25 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -82.72 319.35 6.53 -76.19 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: 1.03 Total: 8.80 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 4.24 Total: -6.05 kcal Atomic # 7 Polarization: -84.73 SS G_CDS: -2.13 Total: -86.86 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.05 Total: -30.35 kcal Atomic # 9 Polarization: -10.28 SS G_CDS: 1.55 Total: -8.73 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.88 Total: 46.99 kcal Total: -82.72 6.53 -76.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344330800.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.841 kcal (2) G-P(sol) polarization free energy of solvation -82.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds