Wall clock time and date at job start Tue Mar 31 2020 05:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.46942 * 2 1 4 4 C 1.50705 * 109.47163 * 240.00057 * 2 1 3 5 5 H 1.07997 * 119.99497 * 240.00064 * 4 2 1 6 6 C 1.37875 * 120.00110 * 59.99889 * 4 2 1 7 7 N 1.31513 * 119.99874 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99790 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47356 * 60.00009 * 8 6 4 10 10 H 1.48506 * 109.46579 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47058 * 299.99767 * 8 6 4 12 12 N 1.46497 * 109.47057 * 120.00065 * 2 1 3 13 13 C 1.46495 * 120.00294 * 59.99874 * 12 2 1 14 14 C 1.34783 * 119.99947 * 239.99742 * 12 2 1 15 15 O 1.21554 * 119.99555 * 4.87236 * 14 12 2 16 16 C 1.47842 * 120.00065 * 184.86673 * 14 12 2 17 17 C 1.39581 * 120.14502 * 320.81468 * 16 14 12 18 18 C 1.37956 * 119.85166 * 179.72291 * 17 16 14 19 19 C 1.38356 * 120.14468 * 0.27926 * 18 17 16 20 20 C 1.50704 * 119.85551 * 179.97438 * 19 18 17 21 21 F 1.39901 * 109.47308 * 300.00564 * 20 19 18 22 22 F 1.39906 * 109.46646 * 59.99866 * 20 19 18 23 23 C 1.38364 * 120.29411 * 0.02562 * 19 18 17 24 24 C 1.37956 * 120.14365 * 359.97438 * 23 19 18 25 25 H 1.09004 * 109.47587 * 300.00125 * 1 2 3 26 26 H 1.09006 * 109.47457 * 60.00317 * 1 2 3 27 27 H 1.08998 * 109.47682 * 180.02562 * 1 2 3 28 28 H 0.97001 * 119.99688 * 180.02562 * 7 6 4 29 29 H 1.09007 * 109.47329 * 265.55250 * 13 12 2 30 30 H 1.08997 * 109.47120 * 25.55222 * 13 12 2 31 31 H 1.09002 * 109.47398 * 145.55262 * 13 12 2 32 32 H 1.07997 * 120.06997 * 359.97438 * 17 16 14 33 33 H 1.08000 * 119.92846 * 180.26145 * 18 17 16 34 34 H 1.09000 * 109.47511 * 179.97438 * 20 19 18 35 35 H 1.08005 * 119.92597 * 179.97438 * 23 19 18 36 36 H 1.08000 * 120.07358 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0077 10 1 1.8269 -0.4199 -5.2204 11 1 3.8063 -1.1210 -4.0081 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0931 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0140 1.1508 1.9377 16 6 3.3744 -0.7601 3.2336 17 6 2.6243 -1.7273 3.9044 18 6 3.1746 -2.4037 4.9734 19 6 4.4652 -2.1211 5.3844 20 6 5.0598 -2.8636 6.5533 21 9 4.2823 -2.6368 7.6941 22 9 5.0852 -4.2337 6.2712 23 6 5.2119 -1.1591 4.7277 24 6 4.6734 -0.4754 3.6573 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 0.7089 1.1613 -3.4844 29 1 0.7818 -2.1446 2.0657 30 1 1.4523 -2.5768 0.4745 31 1 2.4956 -2.6017 1.9165 32 1 1.6166 -1.9484 3.5848 33 1 2.5968 -3.1553 5.4907 34 1 6.0758 -2.5103 6.7294 35 1 6.2186 -0.9429 5.0539 36 1 5.2575 0.2751 3.1453 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349432993.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:13 Heat of formation + Delta-G solvation = -103.967394 kcal Electronic energy + Delta-G solvation = -21893.034907 eV Core-core repulsion = 18206.220060 eV Total energy + Delta-G solvation = -3686.814846 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.19692 -47.18296 -40.08018 -38.18557 -35.47318 -33.23864 -32.05128 -31.18283 -29.36793 -26.73405 -26.18968 -25.25905 -22.89213 -22.77554 -20.94989 -18.97940 -17.68433 -17.51308 -17.41290 -16.93166 -16.27522 -15.71924 -15.03922 -14.80527 -14.61204 -14.16840 -14.11786 -13.79629 -13.56032 -13.52786 -13.03244 -12.79522 -12.57657 -12.47095 -12.29460 -11.66032 -11.58708 -11.25805 -11.12075 -10.99783 -10.87610 -10.74305 -10.31526 -10.21632 -9.31178 -9.21992 -9.09473 -8.97700 -8.47430 -7.70134 -6.11995 -4.20706 0.73254 1.22843 3.07772 3.25270 3.30648 3.32061 3.46840 3.65100 3.89187 3.95225 4.29926 4.35596 4.75864 4.79737 4.81827 4.93334 5.19265 5.20902 5.36821 5.54753 5.70799 5.80068 5.91898 6.06455 6.15098 6.30969 6.31795 6.65990 6.71094 6.78866 7.00289 7.32858 7.45596 7.65626 7.95225 8.12585 8.40889 8.73853 8.91660 9.45874 10.93339 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.029919 B = 0.003750 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.621391 B = 7464.245416 C = 7658.880717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.257 3.743 3 H 0.065 0.935 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.582 5.582 13 C 0.076 3.924 14 C 0.541 3.459 15 O -0.544 6.544 16 C -0.090 4.090 17 C -0.098 4.098 18 C -0.088 4.088 19 C -0.164 4.164 20 C 0.314 3.686 21 F -0.201 7.201 22 F -0.200 7.200 23 C -0.093 4.093 24 C -0.073 4.073 25 H 0.012 0.988 26 H 0.094 0.906 27 H 0.030 0.970 28 H 0.265 0.735 29 H 0.046 0.954 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.144 0.856 33 H 0.131 0.869 34 H 0.118 0.882 35 H 0.133 0.867 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.984 -8.027 15.586 18.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.082 0.918 4 C -0.568 4.568 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.311 5.311 13 C -0.068 4.068 14 C 0.327 3.673 15 O -0.423 6.423 16 C -0.093 4.093 17 C -0.117 4.117 18 C -0.106 4.106 19 C -0.165 4.165 20 C 0.260 3.740 21 F -0.182 7.182 22 F -0.181 7.181 23 C -0.111 4.111 24 C -0.092 4.092 25 H 0.031 0.969 26 H 0.113 0.887 27 H 0.049 0.951 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.161 0.839 33 H 0.148 0.852 34 H 0.135 0.865 35 H 0.151 0.849 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.958 -7.310 15.333 18.001 hybrid contribution 0.185 -0.689 -0.809 1.079 sum 6.143 -8.000 14.524 17.683 Atomic orbital electron populations 1.22087 0.97945 0.99495 1.00955 1.19013 0.91095 0.94537 0.79584 0.91762 1.21268 1.32157 1.13180 0.90222 0.92212 1.24887 0.94856 0.94948 0.98973 1.69869 1.36111 1.22479 1.23982 0.86533 0.79250 0.79581 0.81898 1.20179 1.21117 1.20218 1.48210 1.47992 1.11678 1.23264 1.21954 0.98739 0.83365 1.02706 1.18246 0.79779 0.86911 0.82342 1.90752 1.61248 1.14903 1.75387 1.20446 0.95340 0.96632 0.96915 1.21739 1.00919 0.94307 0.94702 1.20881 0.94181 0.99276 0.96287 1.20429 0.96692 1.00508 0.98870 1.20418 0.95221 0.77251 0.81119 1.93015 1.78220 1.94349 1.52589 1.93019 1.97453 1.33850 1.93819 1.20848 0.99672 0.95102 0.95486 1.21219 0.94259 0.98272 0.95441 0.96906 0.88705 0.95081 0.92535 0.93546 0.89746 0.92168 0.83879 0.85151 0.86461 0.84874 0.84333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 8.97 37.15 0.33 -3.12 16 2 C 0.26 6.50 2.63 -69.08 -0.18 6.31 16 3 H 0.06 1.88 6.91 -51.93 -0.36 1.52 16 4 C -0.53 -14.07 7.96 -34.44 -0.27 -14.34 16 5 H 0.06 1.56 7.41 -52.49 -0.39 1.17 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -24.74 11.32 55.43 0.63 -24.11 16 8 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 N -0.58 -12.29 2.75 -176.38 -0.49 -12.77 16 13 C 0.08 1.25 7.83 59.84 0.47 1.72 16 14 C 0.54 11.29 7.36 -12.33 -0.09 11.20 16 15 O -0.54 -13.42 16.25 5.32 0.09 -13.33 16 16 C -0.09 -1.45 5.24 -104.97 -0.55 -2.00 16 17 C -0.10 -1.31 7.57 -39.18 -0.30 -1.60 16 18 C -0.09 -1.02 9.57 -39.64 -0.38 -1.40 16 19 C -0.16 -1.77 5.38 -104.53 -0.56 -2.33 16 20 C 0.31 2.80 5.45 36.01 0.20 3.00 16 21 F -0.20 -2.12 17.25 2.25 0.04 -2.08 16 22 F -0.20 -2.12 17.25 2.25 0.04 -2.08 16 23 C -0.09 -0.99 9.65 -39.64 -0.38 -1.37 16 24 C -0.07 -1.01 9.63 -39.19 -0.38 -1.39 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 27 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.05 0.65 6.89 -51.92 -0.36 0.29 16 30 H 0.08 1.48 7.09 -51.93 -0.37 1.11 16 31 H 0.06 0.87 5.81 -51.93 -0.30 0.56 16 32 H 0.14 1.75 5.30 -52.49 -0.28 1.47 16 33 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.12 0.63 7.87 -51.93 -0.41 0.22 16 35 H 0.13 0.95 7.94 -52.48 -0.42 0.54 16 36 H 0.14 1.91 8.05 -52.49 -0.42 1.49 16 LS Contribution 309.74 15.07 4.67 4.67 Total: -1.00 -31.16 309.74 -6.23 -37.39 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -4.00 Total: 0.27 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -2.19 Total: -3.65 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.14 Total: -36.88 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.09 Total: -13.33 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.08 Total: -4.16 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.16 -6.23 -37.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349432993.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.576 kcal (2) G-P(sol) polarization free energy of solvation -31.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds