Wall clock time and date at job start Tue Mar 31 2020 05:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.46942 * 2 1 4 4 C 1.50705 * 109.47163 * 240.00057 * 2 1 3 5 5 H 1.07997 * 119.99497 * 240.00064 * 4 2 1 6 6 C 1.37875 * 120.00110 * 59.99889 * 4 2 1 7 7 N 1.31513 * 119.99874 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99790 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47356 * 60.00009 * 8 6 4 10 10 H 1.48506 * 109.46579 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47058 * 299.99767 * 8 6 4 12 12 N 1.46497 * 109.47057 * 120.00065 * 2 1 3 13 13 C 1.46495 * 120.00294 * 59.99874 * 12 2 1 14 14 C 1.34783 * 119.99947 * 239.99742 * 12 2 1 15 15 O 1.21554 * 119.99555 * 4.87236 * 14 12 2 16 16 C 1.47842 * 120.00065 * 184.86673 * 14 12 2 17 17 C 1.39581 * 120.14502 * 320.81468 * 16 14 12 18 18 C 1.37956 * 119.85166 * 179.72291 * 17 16 14 19 19 C 1.38356 * 120.14468 * 0.27926 * 18 17 16 20 20 C 1.50704 * 119.85551 * 179.97438 * 19 18 17 21 21 F 1.39901 * 109.47308 * 300.00564 * 20 19 18 22 22 F 1.39906 * 109.46646 * 59.99866 * 20 19 18 23 23 C 1.38364 * 120.29411 * 0.02562 * 19 18 17 24 24 C 1.37956 * 120.14365 * 359.97438 * 23 19 18 25 25 H 1.09004 * 109.47587 * 300.00125 * 1 2 3 26 26 H 1.09006 * 109.47457 * 60.00317 * 1 2 3 27 27 H 1.08998 * 109.47682 * 180.02562 * 1 2 3 28 28 H 0.97001 * 119.99688 * 180.02562 * 7 6 4 29 29 H 1.09007 * 109.47329 * 265.55250 * 13 12 2 30 30 H 1.08997 * 109.47120 * 25.55222 * 13 12 2 31 31 H 1.09002 * 109.47398 * 145.55262 * 13 12 2 32 32 H 1.07997 * 120.06997 * 359.97438 * 17 16 14 33 33 H 1.08000 * 119.92846 * 180.26145 * 18 17 16 34 34 H 1.09000 * 109.47511 * 179.97438 * 20 19 18 35 35 H 1.08005 * 119.92597 * 179.97438 * 23 19 18 36 36 H 1.08000 * 120.07358 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0077 10 1 1.8269 -0.4199 -5.2204 11 1 3.8063 -1.1210 -4.0081 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0931 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0140 1.1508 1.9377 16 6 3.3744 -0.7601 3.2336 17 6 2.6243 -1.7273 3.9044 18 6 3.1746 -2.4037 4.9734 19 6 4.4652 -2.1211 5.3844 20 6 5.0598 -2.8636 6.5533 21 9 4.2823 -2.6368 7.6941 22 9 5.0852 -4.2337 6.2712 23 6 5.2119 -1.1591 4.7277 24 6 4.6734 -0.4754 3.6573 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 0.7089 1.1613 -3.4844 29 1 0.7818 -2.1446 2.0657 30 1 1.4523 -2.5768 0.4745 31 1 2.4956 -2.6017 1.9165 32 1 1.6166 -1.9484 3.5848 33 1 2.5968 -3.1553 5.4907 34 1 6.0758 -2.5103 6.7294 35 1 6.2186 -0.9429 5.0539 36 1 5.2575 0.2751 3.1453 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349432993.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:13 Heat of formation + Delta-G solvation = -122.251847 kcal Electronic energy + Delta-G solvation = -21893.827780 eV Core-core repulsion = 18206.220060 eV Total energy + Delta-G solvation = -3687.607720 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.92237 -47.91888 -41.41652 -39.48216 -37.25609 -35.00807 -33.33022 -32.19079 -31.11303 -27.97432 -27.43958 -27.26717 -24.07847 -23.84451 -22.37860 -20.52185 -18.68772 -18.49155 -18.32900 -18.13531 -17.91757 -17.40977 -16.43426 -16.36488 -15.74386 -15.42692 -15.18791 -14.88092 -14.57296 -14.51022 -14.30057 -14.16987 -14.00709 -13.77329 -13.54460 -13.26873 -13.01410 -12.83577 -12.77075 -12.70087 -12.23361 -12.15148 -12.14067 -11.89470 -11.25218 -10.85024 -10.53829 -10.13587 -10.02694 -9.42331 -8.16923 -6.34106 -0.31189 0.28237 1.41475 1.43716 1.51235 1.70722 2.19857 2.43975 2.62853 2.74398 3.11320 3.28755 3.55804 3.56989 3.88756 4.01349 4.11879 4.25402 4.35844 4.44416 4.55488 4.65781 4.72251 4.86531 4.91943 4.97729 5.01810 5.08764 5.22360 5.29657 5.43839 5.54252 5.62783 5.72043 5.98736 6.12020 6.69229 6.72554 7.20153 7.39635 8.87629 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.029919 B = 0.003750 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.621391 B = 7464.245416 C = 7658.880717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.261 3.739 3 H 0.010 0.990 4 C -0.542 4.542 5 H 0.062 0.938 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.966 3.034 9 H -0.262 1.262 10 H -0.283 1.283 11 H -0.277 1.277 12 N -0.589 5.589 13 C 0.075 3.925 14 C 0.533 3.467 15 O -0.599 6.599 16 C -0.117 4.117 17 C -0.097 4.097 18 C -0.089 4.089 19 C -0.159 4.159 20 C 0.314 3.686 21 F -0.210 7.210 22 F -0.209 7.209 23 C -0.077 4.077 24 C -0.087 4.087 25 H 0.019 0.981 26 H 0.069 0.931 27 H 0.049 0.951 28 H 0.266 0.734 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.164 0.836 35 H 0.176 0.824 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.173 -10.607 17.272 21.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.159 3.841 3 H 0.028 0.972 4 C -0.580 4.580 5 H 0.080 0.920 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.791 3.209 9 H -0.186 1.186 10 H -0.209 1.209 11 H -0.202 1.202 12 N -0.318 5.318 13 C -0.067 4.067 14 C 0.322 3.678 15 O -0.482 6.482 16 C -0.120 4.120 17 C -0.115 4.115 18 C -0.107 4.107 19 C -0.160 4.160 20 C 0.261 3.739 21 F -0.191 7.191 22 F -0.190 7.190 23 C -0.094 4.094 24 C -0.106 4.106 25 H 0.038 0.962 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.169 0.831 33 H 0.169 0.831 34 H 0.181 0.819 35 H 0.193 0.807 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 7.137 -9.939 17.045 20.982 hybrid contribution -0.153 0.114 -1.231 1.245 sum 6.984 -9.825 15.814 19.884 Atomic orbital electron populations 1.21876 0.96840 1.00291 1.00050 1.18618 0.91905 0.92246 0.81337 0.97204 1.21519 1.32259 1.13253 0.91016 0.92022 1.25736 0.94950 0.95591 1.02015 1.70016 1.37094 1.23782 1.24620 0.85488 0.78411 0.78996 0.78002 1.18629 1.20850 1.20242 1.48185 1.48105 1.13369 1.22137 1.22190 1.00920 0.80638 1.02983 1.19048 0.78898 0.86562 0.83256 1.90702 1.62993 1.17433 1.77062 1.20113 0.96831 0.98577 0.96468 1.21750 1.01036 0.93663 0.95045 1.21157 0.94876 0.99115 0.95503 1.20806 0.96303 0.99864 0.98989 1.20784 0.96903 0.76476 0.79738 1.93004 1.78799 1.94349 1.52952 1.93008 1.97526 1.34659 1.93839 1.21179 1.01240 0.93536 0.93474 1.21303 0.93633 0.98892 0.96771 0.96159 0.91200 0.93225 0.92522 0.90664 0.90786 0.89776 0.83133 0.83147 0.81884 0.80664 0.85340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.41 8.97 71.98 0.65 -5.76 16 2 C 0.26 13.73 2.63 44.25 0.12 13.85 16 3 H 0.01 0.63 6.91 -2.39 -0.02 0.61 16 4 C -0.54 -29.47 7.96 25.60 0.20 -29.27 16 5 H 0.06 3.24 7.41 -2.91 -0.02 3.22 16 6 C 0.02 0.93 5.30 84.65 0.45 1.38 16 7 N -0.92 -52.74 11.32 21.45 0.24 -52.50 16 8 Si 0.97 42.72 29.54 68.60 2.03 44.75 16 9 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 12 N -0.59 -25.52 2.75 -830.22 -2.29 -27.80 16 13 C 0.07 2.39 7.83 127.77 1.00 3.39 16 14 C 0.53 23.16 7.36 86.78 0.64 23.80 16 15 O -0.60 -31.61 16.25 -3.88 -0.06 -31.68 16 16 C -0.12 -3.73 5.24 -20.09 -0.11 -3.83 16 17 C -0.10 -2.39 7.57 22.53 0.17 -2.22 16 18 C -0.09 -1.77 9.57 22.23 0.21 -1.56 16 19 C -0.16 -2.80 5.38 -19.80 -0.11 -2.91 16 20 C 0.31 4.18 5.45 71.24 0.39 4.57 16 21 F -0.21 -3.64 17.25 44.97 0.78 -2.86 16 22 F -0.21 -3.60 17.25 44.97 0.78 -2.82 16 23 C -0.08 -1.37 9.65 22.23 0.21 -1.15 16 24 C -0.09 -2.34 9.63 22.53 0.22 -2.12 16 25 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 3.75 6.07 -2.38 -0.01 3.74 16 27 H 0.05 2.16 7.67 -2.39 -0.02 2.14 16 28 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 29 H 0.08 1.97 6.89 -2.38 -0.02 1.95 16 30 H 0.07 2.53 7.09 -2.39 -0.02 2.51 16 31 H 0.08 2.28 5.81 -2.39 -0.01 2.27 16 32 H 0.15 3.37 5.30 -2.91 -0.02 3.36 16 33 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 34 H 0.16 0.77 7.87 -2.39 -0.02 0.75 16 35 H 0.18 1.60 7.94 -2.91 -0.02 1.58 16 36 H 0.13 3.63 8.05 -2.91 -0.02 3.60 16 Total: -1.00 -71.96 309.74 6.63 -65.33 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: 1.11 Total: 9.44 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: 4.04 Total: -1.85 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -2.04 Total: -80.31 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -0.06 Total: -31.68 kcal Atomic # 9 Polarization: -7.23 SS G_CDS: 1.55 Total: -5.68 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -71.96 6.63 -65.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349432993.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.918 kcal (2) G-P(sol) polarization free energy of solvation -71.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds