Wall clock time and date at job start Tue Mar 31 2020 05:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47430 * 2 1 4 4 C 1.37092 * 119.99817 * 82.77937 * 3 2 1 5 5 H 1.08004 * 119.99892 * 171.64974 * 4 3 2 6 6 C 1.38951 * 120.00543 * 351.64795 * 4 3 2 7 7 N 1.31414 * 119.99508 * 1.31204 * 6 4 3 8 8 Si 1.86793 * 120.00429 * 181.31025 * 6 4 3 9 9 H 1.48498 * 109.47342 * 59.99839 * 8 6 4 10 10 H 1.48496 * 109.47328 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46924 * 299.99851 * 8 6 4 12 12 C 1.34778 * 120.00036 * 262.78513 * 3 2 1 13 13 O 1.21294 * 119.99938 * 5.83846 * 12 3 2 14 14 C 1.50698 * 119.99973 * 185.84139 * 12 3 2 15 15 H 1.09006 * 109.47102 * 310.46183 * 14 12 3 16 16 C 1.53001 * 109.47139 * 70.46266 * 14 12 3 17 17 C 1.50697 * 109.47028 * 190.46379 * 14 12 3 18 18 C 1.38253 * 119.96798 * 299.97900 * 17 14 12 19 19 C 1.38215 * 120.07389 * 180.02562 * 18 17 14 20 20 C 1.38411 * 119.99521 * 359.97385 * 19 18 17 21 21 F 1.35103 * 120.03195 * 179.97438 * 20 19 18 22 22 C 1.38647 * 119.93289 * 359.75080 * 20 19 18 23 23 F 1.35101 * 120.03759 * 180.27285 * 22 20 19 24 24 C 1.38220 * 119.96264 * 120.00201 * 17 14 12 25 25 H 1.09006 * 109.47092 * 299.99793 * 1 2 3 26 26 H 1.08997 * 109.47433 * 59.99916 * 1 2 3 27 27 H 1.09008 * 109.47451 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46580 * 239.99635 * 2 1 3 29 29 H 1.09006 * 109.47232 * 120.00252 * 2 1 3 30 30 H 0.97000 * 119.99859 * 179.97438 * 7 6 4 31 31 H 1.08993 * 109.47326 * 294.78414 * 16 14 12 32 32 H 1.09004 * 109.46610 * 54.78600 * 16 14 12 33 33 H 1.09000 * 109.46733 * 174.78095 * 16 14 12 34 34 H 1.07996 * 119.96264 * 0.02562 * 18 17 14 35 35 H 1.07997 * 119.99872 * 179.97438 * 19 18 17 36 36 H 1.08001 * 120.00142 * 359.94753 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1062 2.0771 1.1779 5 1 2.5898 3.0426 1.1999 6 6 1.5729 1.5406 2.3434 7 7 1.0073 0.3546 2.3219 8 14 1.6601 2.5049 3.9408 9 1 0.9437 3.7956 3.7796 10 1 1.0256 1.7186 5.0290 11 1 3.0811 2.7669 4.2838 12 6 2.3812 1.9676 -1.1580 13 8 2.2047 1.3918 -2.2108 14 6 3.0063 3.3388 -1.1446 15 1 2.4001 4.0086 -0.5346 16 6 4.4166 3.2507 -0.5578 17 6 3.0804 3.8708 -2.5526 18 6 3.8003 3.1848 -3.5131 19 6 3.8701 3.6710 -4.8050 20 6 3.2184 4.8457 -5.1384 21 9 3.2865 5.3219 -6.4009 22 6 2.4917 5.5306 -4.1767 23 9 1.8501 6.6745 -4.5011 24 6 2.4288 5.0444 -2.8823 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 0.6354 -0.0202 3.1356 31 1 4.3566 2.9546 0.4894 32 1 4.9950 2.5114 -1.1119 33 1 4.9028 4.2233 -0.6332 34 1 4.3087 2.2680 -3.2536 35 1 4.4332 3.1344 -5.5542 36 1 1.8663 5.5791 -2.1313 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358217201.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:57 Heat of formation + Delta-G solvation = -86.803598 kcal Electronic energy + Delta-G solvation = -22473.718864 eV Core-core repulsion = 18787.648296 eV Total energy + Delta-G solvation = -3686.070568 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.27726 -48.35756 -39.64863 -38.06997 -35.20700 -33.46446 -31.52161 -30.68779 -29.83206 -28.45189 -25.04674 -24.17433 -23.04582 -22.49029 -20.77682 -19.14483 -17.80317 -17.33239 -16.98944 -16.25664 -16.12834 -15.89805 -14.78913 -14.65144 -14.43658 -14.28252 -14.22143 -13.77775 -13.60437 -13.19119 -12.76286 -12.57145 -12.46627 -12.07630 -11.64374 -11.51812 -11.33847 -11.27662 -11.13507 -10.93407 -10.71102 -10.53106 -10.44809 -10.17213 -9.92140 -8.93829 -8.86173 -8.40459 -8.27906 -7.82890 -6.29468 -3.98556 1.15995 1.24238 3.04127 3.13178 3.13851 3.58736 3.80657 3.96607 3.99572 4.46759 4.64243 4.87189 4.94803 5.00116 5.24247 5.37918 5.65706 5.76054 5.78401 5.95873 6.02998 6.20419 6.26379 6.31435 6.33986 6.58453 6.63929 6.79303 6.80202 6.92467 6.97765 7.07857 7.24225 7.49253 7.75163 7.84395 8.39152 8.98212 9.46304 9.84699 10.54584 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.024685 B = 0.004720 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.997898 B = 5930.822997 C = 6366.603282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.132 3.868 3 N -0.436 5.436 4 C -0.327 4.327 5 H 0.102 0.898 6 C 0.030 3.970 7 N -0.865 5.865 8 Si 0.925 3.075 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.273 1.273 12 C 0.455 3.545 13 O -0.605 6.605 14 C -0.061 4.061 15 H 0.098 0.902 16 C -0.138 4.138 17 C -0.029 4.029 18 C -0.057 4.057 19 C -0.131 4.131 20 C 0.053 3.947 21 F -0.137 7.137 22 C 0.059 3.941 23 F -0.136 7.136 24 C -0.124 4.124 25 H 0.086 0.914 26 H 0.016 0.984 27 H 0.030 0.970 28 H 0.033 0.967 29 H 0.111 0.889 30 H 0.266 0.734 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.037 5.837 -4.617 8.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.009 3.991 3 N -0.153 5.153 4 C -0.455 4.455 5 H 0.120 0.880 6 C -0.173 4.173 7 N -0.505 5.505 8 Si 0.752 3.248 9 H -0.199 1.199 10 H -0.208 1.208 11 H -0.198 1.198 12 C 0.243 3.757 13 O -0.492 6.492 14 C -0.082 4.082 15 H 0.116 0.884 16 C -0.196 4.196 17 C -0.030 4.030 18 C -0.075 4.075 19 C -0.150 4.150 20 C 0.033 3.967 21 F -0.116 7.116 22 C 0.039 3.961 23 F -0.114 7.114 24 C -0.143 4.143 25 H 0.105 0.895 26 H 0.035 0.965 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.129 0.871 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.158 0.842 35 H 0.159 0.841 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.813 5.447 -4.993 8.818 hybrid contribution -0.330 0.738 0.589 1.000 sum 4.483 6.185 -4.403 8.817 Atomic orbital electron populations 1.22106 0.97060 0.99225 1.00864 1.21516 0.94410 0.82528 1.00611 1.43812 1.54201 1.12060 1.05255 1.19779 1.37056 1.03166 0.85495 0.87996 1.25274 0.95949 0.96410 0.99713 1.70205 1.36816 1.15480 1.28017 0.86012 0.78667 0.79285 0.80842 1.19912 1.20789 1.19843 1.19649 0.84635 0.87424 0.84032 1.90547 1.61712 1.66252 1.30687 1.20101 0.98949 0.97414 0.91764 0.88401 1.21770 0.93697 1.01349 1.02757 1.19560 0.94597 0.92592 0.96258 1.20955 0.96949 0.98610 0.90988 1.21030 1.01127 0.94536 0.98301 1.17640 1.03269 0.96392 0.79359 1.91481 1.95142 1.88060 1.36908 1.17551 0.99003 0.85690 0.93892 1.91488 1.79734 1.46998 1.93217 1.20977 1.01513 0.97596 0.94191 0.89540 0.96530 0.95053 0.94866 0.87119 0.92215 0.89990 0.92647 0.92685 0.84210 0.84119 0.83922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 9.46 37.16 0.35 -2.75 16 2 C 0.13 3.14 5.46 -4.05 -0.02 3.12 16 3 N -0.44 -10.29 2.64 -114.81 -0.30 -10.60 16 4 C -0.33 -7.52 8.47 -14.94 -0.13 -7.64 16 5 H 0.10 2.14 5.04 -52.48 -0.26 1.88 16 6 C 0.03 0.68 5.25 -17.47 -0.09 0.59 16 7 N -0.87 -20.59 7.19 55.50 0.40 -20.19 16 8 Si 0.93 18.08 29.55 -169.99 -5.02 13.06 16 9 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 10 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 11 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 12 C 0.46 10.18 6.82 -10.99 -0.07 10.11 16 13 O -0.60 -14.94 14.30 5.55 0.08 -14.86 16 14 C -0.06 -1.09 2.05 -92.92 -0.19 -1.28 16 15 H 0.10 1.70 6.94 -51.93 -0.36 1.34 16 16 C -0.14 -2.13 8.62 37.16 0.32 -1.81 16 17 C -0.03 -0.49 4.50 -104.62 -0.47 -0.96 16 18 C -0.06 -0.90 7.89 -39.58 -0.31 -1.21 16 19 C -0.13 -1.88 10.02 -39.53 -0.40 -2.27 16 20 C 0.05 0.82 7.31 -39.37 -0.29 0.53 16 21 F -0.14 -2.11 17.18 2.25 0.04 -2.07 16 22 C 0.06 0.92 7.31 -39.37 -0.29 0.64 16 23 F -0.14 -2.15 17.18 2.25 0.04 -2.11 16 24 C -0.12 -1.92 9.65 -39.52 -0.38 -2.30 16 25 H 0.09 2.12 5.87 -51.93 -0.30 1.81 16 26 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.03 0.65 8.14 -51.92 -0.42 0.23 16 28 H 0.03 0.80 7.30 -51.93 -0.38 0.42 16 29 H 0.11 2.74 5.89 -51.93 -0.31 2.43 16 30 H 0.27 6.10 8.31 -40.82 -0.34 5.76 16 31 H 0.08 1.34 6.22 -51.93 -0.32 1.02 16 32 H 0.05 0.84 7.57 -51.93 -0.39 0.44 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.14 2.21 7.32 -52.49 -0.38 1.82 16 35 H 0.14 1.64 8.06 -52.49 -0.42 1.21 16 36 H 0.14 1.95 7.94 -52.49 -0.42 1.53 16 LS Contribution 303.06 15.07 4.57 4.57 Total: -1.00 -26.18 303.06 -6.13 -32.32 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -3.96 Total: 5.12 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -1.97 Total: -5.24 kcal Atomic # 7 Polarization: -30.88 SS G_CDS: 0.10 Total: -30.79 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: 0.08 Total: -14.86 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.08 Total: -4.18 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.02 Total: 13.06 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -26.18 -6.13 -32.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358217201.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.488 kcal (2) G-P(sol) polarization free energy of solvation -26.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds