Wall clock time and date at job start Tue Mar 31 2020 05:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46872 * 59.99743 * 8 6 4 10 10 H 1.48503 * 109.47008 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46914 * 299.99916 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.34777 * 120.00376 * 275.00479 * 12 2 1 14 14 O 1.21279 * 119.99824 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00179 * 179.97438 * 13 12 2 16 16 H 1.09009 * 109.47183 * 59.99391 * 15 13 12 17 17 C 1.53000 * 109.47313 * 300.00086 * 15 13 12 18 18 C 1.50703 * 109.47404 * 179.97438 * 15 13 12 19 19 C 1.38259 * 119.96393 * 240.00069 * 18 15 13 20 20 C 1.38217 * 120.06539 * 179.97438 * 19 18 15 21 21 C 1.38407 * 120.00180 * 359.97438 * 20 19 18 22 22 F 1.35097 * 120.03613 * 180.02562 * 21 20 19 23 23 C 1.38648 * 119.93230 * 0.02562 * 21 20 19 24 24 F 1.35094 * 120.03817 * 179.97438 * 23 21 20 25 25 C 1.38207 * 119.96106 * 59.72746 * 18 15 13 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 30 30 H 0.97006 * 119.99921 * 94.99902 * 12 2 1 31 31 H 1.09001 * 109.47403 * 59.99872 * 17 15 13 32 32 H 1.09001 * 109.47524 * 180.02562 * 17 15 13 33 33 H 1.09008 * 109.46947 * 299.99858 * 17 15 13 34 34 H 1.07995 * 119.96663 * 359.97438 * 19 18 15 35 35 H 1.07994 * 119.99806 * 179.97438 * 20 19 18 36 36 H 1.08002 * 120.00550 * 359.97438 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8261 -0.4206 -5.2204 11 1 3.8064 -1.1209 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8589 1.1587 2.4115 15 6 2.6488 -0.7286 3.5878 16 1 3.6480 -1.1213 3.3986 17 6 1.7043 -1.8822 3.9315 18 6 2.7001 0.2399 4.7413 19 6 3.9024 0.4979 5.3733 20 6 3.9520 1.3861 6.4311 21 6 2.7975 2.0188 6.8583 22 9 2.8452 2.8875 7.8917 23 6 1.5918 1.7601 6.2244 24 9 0.4635 2.3760 6.6399 25 6 1.5463 0.8734 5.1624 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 0.7089 1.1612 -3.4844 30 1 2.2490 -1.6317 1.1527 31 1 1.6676 -2.5827 3.0971 32 1 2.0670 -2.3959 4.8218 33 1 0.7051 -1.4897 4.1206 34 1 4.8037 0.0048 5.0402 35 1 4.8916 1.5866 6.9243 36 1 0.6086 0.6747 4.6648 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359248014.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:11 Heat of formation + Delta-G solvation = -115.067749 kcal Electronic energy + Delta-G solvation = -21855.641074 eV Core-core repulsion = 18168.344880 eV Total energy + Delta-G solvation = -3687.296194 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.44645 -48.52066 -39.99259 -38.27944 -34.89083 -33.92153 -32.34833 -30.84668 -29.54636 -28.44034 -25.29328 -24.74673 -23.27300 -22.39507 -20.69943 -19.33818 -17.99783 -17.50679 -17.16816 -16.63973 -16.28316 -15.64820 -15.38366 -14.93881 -14.68677 -14.60920 -14.45233 -13.97639 -13.92281 -13.34465 -13.18847 -12.62775 -12.43558 -12.42333 -12.01635 -11.78927 -11.59315 -11.29073 -11.21721 -11.08410 -10.96873 -10.74807 -10.36039 -10.26710 -9.12044 -9.08406 -9.03342 -8.63273 -8.56891 -7.96588 -6.15321 -4.25225 0.86428 1.00092 3.22892 3.25099 3.28920 3.30063 3.31299 3.76712 4.04756 4.30093 4.34398 4.42163 4.53859 4.90278 5.05259 5.14592 5.17824 5.19719 5.35855 5.61877 5.71699 5.72982 5.83276 5.88918 5.95896 6.07898 6.36383 6.71085 6.78740 6.92120 7.11091 7.40693 7.51110 7.65238 7.87335 8.11545 8.60409 8.73534 9.05783 9.42479 10.90498 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.031783 B = 0.003624 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.774246 B = 7723.906072 C = 7946.705140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.705 5.705 13 C 0.504 3.496 14 O -0.547 6.547 15 C -0.078 4.078 16 H 0.106 0.894 17 C -0.141 4.141 18 C -0.038 4.038 19 C -0.095 4.095 20 C -0.129 4.129 21 C 0.060 3.940 22 F -0.134 7.134 23 C 0.066 3.934 24 F -0.131 7.131 25 C -0.088 4.088 26 H 0.026 0.974 27 H 0.090 0.910 28 H 0.014 0.986 29 H 0.265 0.735 30 H 0.389 0.611 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.571 -4.881 16.081 17.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.066 0.934 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.353 5.353 13 C 0.288 3.712 14 O -0.425 6.425 15 C -0.099 4.099 16 H 0.124 0.876 17 C -0.198 4.198 18 C -0.039 4.039 19 C -0.113 4.113 20 C -0.148 4.148 21 C 0.039 3.961 22 F -0.112 7.112 23 C 0.046 3.954 24 F -0.109 7.109 25 C -0.107 4.107 26 H 0.045 0.955 27 H 0.108 0.892 28 H 0.033 0.967 29 H 0.075 0.925 30 H 0.221 0.779 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.157 0.843 35 H 0.162 0.838 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.212 -3.839 15.981 16.967 hybrid contribution 0.214 -0.534 -0.700 0.906 sum 4.426 -4.372 15.281 16.499 Atomic orbital electron populations 1.22072 0.98441 0.99077 1.00901 1.18749 0.91027 0.93990 0.79946 0.93373 1.21170 1.32631 1.13284 0.90334 0.92123 1.24887 0.94772 0.94932 0.99063 1.69887 1.35689 1.22397 1.24043 0.86510 0.79163 0.79590 0.81834 1.20151 1.21120 1.20169 1.46506 1.64867 1.13516 1.10388 1.20168 0.79048 0.87494 0.84532 1.90697 1.51009 1.15873 1.84925 1.20412 1.02411 0.95266 0.91852 0.87574 1.21797 0.99089 0.96517 1.02419 1.19307 0.92421 0.96740 0.95414 1.20961 0.97762 0.97565 0.94988 1.20959 0.96972 0.98026 0.98821 1.17671 0.93901 0.94858 0.89626 1.91502 1.97105 1.67073 1.55553 1.17633 0.81631 0.98258 0.97889 1.91515 1.48814 1.81180 1.89437 1.20899 1.00803 0.95061 0.93927 0.95473 0.89168 0.96704 0.92477 0.77883 0.91112 0.91516 0.91849 0.84260 0.83829 0.83774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.26 37.16 0.34 -3.20 16 2 C 0.26 6.51 2.56 -69.09 -0.18 6.34 16 3 H 0.05 1.39 7.58 -51.93 -0.39 0.99 16 4 C -0.54 -13.80 8.73 -34.44 -0.30 -14.10 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.54 11.32 55.43 0.63 -23.92 16 8 Si 0.90 20.22 29.54 -169.99 -5.02 15.19 16 9 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 N -0.71 -13.66 4.96 -54.94 -0.27 -13.94 16 13 C 0.50 9.21 6.98 -10.99 -0.08 9.13 16 14 O -0.55 -12.35 14.75 5.56 0.08 -12.26 16 15 C -0.08 -0.98 2.90 -92.92 -0.27 -1.25 16 16 H 0.11 1.07 7.87 -51.92 -0.41 0.67 16 17 C -0.14 -1.43 8.91 37.16 0.33 -1.10 16 18 C -0.04 -0.49 4.40 -104.62 -0.46 -0.95 16 19 C -0.09 -1.01 9.67 -39.58 -0.38 -1.39 16 20 C -0.13 -1.38 10.02 -39.53 -0.40 -1.78 16 21 C 0.06 0.79 7.31 -39.37 -0.29 0.50 16 22 F -0.13 -1.82 17.18 2.25 0.04 -1.78 16 23 C 0.07 0.96 7.31 -39.36 -0.29 0.67 16 24 F -0.13 -2.02 17.18 2.25 0.04 -1.98 16 25 C -0.09 -1.26 7.90 -39.53 -0.31 -1.57 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 28 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.39 6.37 7.96 -40.82 -0.32 6.05 16 31 H 0.07 0.68 7.57 -51.93 -0.39 0.28 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.70 7.41 -51.92 -0.38 0.31 16 34 H 0.14 1.09 7.94 -52.49 -0.42 0.67 16 35 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 36 H 0.14 2.12 7.51 -52.49 -0.39 1.73 16 LS Contribution 315.93 15.07 4.76 4.76 Total: -1.00 -30.54 315.93 -6.38 -36.91 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -4.26 Total: 4.05 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -2.37 Total: -7.04 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.35 Total: -37.85 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.08 Total: -12.26 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.08 Total: -3.76 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.54 -6.38 -36.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359248014.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.153 kcal (2) G-P(sol) polarization free energy of solvation -30.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds