Wall clock time and date at job start Tue Mar 31 2020 05:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46896 * 109.47367 * 2 1 4 4 C 1.46897 * 111.00245 * 297.54390 * 3 2 1 5 5 C 1.50697 * 109.46960 * 292.79614 * 4 3 2 6 6 H 1.08006 * 120.00325 * 354.98458 * 5 4 3 7 7 C 1.37877 * 120.00083 * 174.98878 * 5 4 3 8 8 N 1.31510 * 120.00101 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00000 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47371 * 89.99687 * 9 7 5 11 11 H 1.48504 * 109.47027 * 209.99690 * 9 7 5 12 12 H 1.48505 * 109.47303 * 329.99699 * 9 7 5 13 13 C 1.46902 * 110.99945 * 61.49467 * 3 2 1 14 14 C 1.53003 * 109.47218 * 66.04681 * 13 3 2 15 15 S 1.81392 * 109.47239 * 180.02562 * 14 13 3 16 16 C 1.76204 * 103.00262 * 180.02562 * 15 14 13 17 17 C 1.38946 * 120.05072 * 0.27038 * 16 15 14 18 18 C 1.38102 * 119.94115 * 180.20782 * 17 16 15 19 19 C 1.38474 * 120.05333 * 359.52026 * 18 17 16 20 20 F 1.35102 * 119.93890 * 180.27157 * 19 18 17 21 21 C 1.38471 * 120.11342 * 0.25172 * 19 18 17 22 22 C 1.38098 * 120.05521 * 359.97438 * 21 19 18 23 23 H 1.09000 * 109.47535 * 59.50788 * 1 2 3 24 24 H 1.09002 * 109.47436 * 179.50736 * 1 2 3 25 25 H 1.09002 * 109.47501 * 299.50161 * 1 2 3 26 26 H 1.09004 * 109.47491 * 239.99981 * 2 1 3 27 27 H 1.09007 * 109.47412 * 120.00097 * 2 1 3 28 28 H 1.08998 * 109.47283 * 52.78944 * 4 3 2 29 29 H 1.08995 * 109.47526 * 172.79435 * 4 3 2 30 30 H 0.97004 * 120.00355 * 180.02562 * 8 7 5 31 31 H 1.09004 * 109.46945 * 306.04804 * 13 3 2 32 32 H 1.08994 * 109.47468 * 186.04715 * 13 3 2 33 33 H 1.08997 * 109.46985 * 59.99853 * 14 13 3 34 34 H 1.08994 * 109.46929 * 300.00364 * 14 13 3 35 35 H 1.07995 * 120.02659 * 359.97438 * 17 16 15 36 36 H 1.07998 * 119.96766 * 179.79556 * 18 17 16 37 37 H 1.08003 * 119.97200 * 179.97438 * 21 19 18 38 38 H 1.08008 * 120.02601 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.5973 2.0927 -1.2159 5 6 2.2904 1.4935 -2.4123 6 1 3.0362 0.7244 -2.2753 7 6 1.9726 1.9270 -3.6820 8 7 1.0642 2.8632 -3.8490 9 14 2.8324 1.1847 -5.1650 10 1 2.0650 0.0069 -5.6439 11 1 2.9128 2.1970 -6.2486 12 1 4.2028 0.7601 -4.7815 13 6 1.5781 2.0994 1.2052 14 6 2.2402 1.4792 2.4372 15 16 1.6944 2.3610 3.9254 16 6 2.5465 1.5210 5.2189 17 6 3.3930 0.4604 4.9203 18 6 4.0564 -0.1992 5.9362 19 6 3.8862 0.2021 7.2506 20 9 4.5405 -0.4413 8.2421 21 6 3.0467 1.2617 7.5503 22 6 2.3775 1.9216 6.5384 23 1 -0.3634 0.5214 -0.8855 24 1 -0.3634 -1.0276 -0.0088 25 1 -0.3634 0.5061 0.8944 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 0.5181 1.9971 -1.3357 29 1 1.8616 3.1469 -1.1332 30 1 0.8403 3.1680 -4.7423 31 1 0.4947 2.0218 1.2972 32 1 1.8619 3.1491 1.1298 33 1 3.3235 1.5569 2.3452 34 1 1.9564 0.4296 2.5125 35 1 3.5292 0.1498 3.8950 36 1 4.7120 -1.0257 5.7049 37 1 2.9153 1.5725 8.5763 38 1 1.7231 2.7483 6.7727 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362173353.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:35 Heat of formation + Delta-G solvation = -21.031985 kcal Electronic energy + Delta-G solvation = -19075.878823 eV Core-core repulsion = 15958.873502 eV Total energy + Delta-G solvation = -3117.005321 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.09875 -39.01409 -37.59967 -32.85012 -31.73202 -30.98073 -30.67207 -29.24562 -26.20542 -23.94029 -23.26500 -23.00514 -22.13803 -19.30120 -18.07997 -17.40637 -16.51756 -16.25609 -15.81681 -15.66443 -15.57760 -14.74649 -14.54678 -14.18112 -13.91264 -13.57722 -13.53795 -13.09358 -13.00322 -12.69112 -12.15376 -11.93603 -11.65734 -11.38728 -11.37242 -11.10685 -10.85762 -10.72003 -10.60126 -10.21871 -10.12710 -9.83498 -9.67814 -9.44248 -9.26107 -8.47508 -7.47825 -7.30872 -6.06578 -4.08038 0.76038 0.92458 1.39240 2.36141 3.23208 3.28905 3.35682 3.39609 4.01523 4.39085 4.42106 4.56642 4.90154 4.91143 5.00179 5.05117 5.22258 5.29453 5.42428 5.56543 5.65244 5.70939 5.83277 5.84115 5.88122 5.92666 5.99372 6.13944 6.16158 6.37870 6.53205 6.62162 6.82456 7.21957 7.36597 7.74727 8.01266 8.10310 8.46920 8.99629 9.56300 11.04043 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.033010 B = 0.002973 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.015387 B = 9416.750576 C = 9752.752279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.058 3.942 3 N -0.531 5.531 4 C 0.189 3.811 5 C -0.506 4.506 6 H 0.063 0.937 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.066 3.934 14 C -0.099 4.099 15 S -0.109 6.109 16 C -0.088 4.088 17 C -0.106 4.106 18 C -0.131 4.131 19 C 0.084 3.916 20 F -0.142 7.142 21 C -0.135 4.135 22 C -0.076 4.076 23 H 0.070 0.930 24 H 0.048 0.952 25 H 0.045 0.955 26 H 0.083 0.917 27 H 0.050 0.950 28 H 0.006 0.994 29 H 0.026 0.974 30 H 0.261 0.739 31 H 0.040 0.960 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.950 -4.126 20.042 20.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.071 4.071 3 N -0.255 5.255 4 C 0.064 3.936 5 C -0.545 4.545 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.725 3.275 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.198 1.198 13 C -0.064 4.064 14 C -0.248 4.248 15 S 0.136 5.864 16 C -0.201 4.201 17 C -0.130 4.130 18 C -0.152 4.152 19 C 0.062 3.938 20 F -0.120 7.120 21 C -0.156 4.156 22 C -0.100 4.100 23 H 0.089 0.911 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.102 0.898 27 H 0.069 0.931 28 H 0.023 0.977 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.095 0.905 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.598 -3.071 19.843 20.143 hybrid contribution 0.506 -1.513 -0.748 1.762 sum 2.104 -4.583 19.095 19.749 Atomic orbital electron populations 1.22394 0.99241 1.01161 1.02134 1.22021 0.92293 0.91416 1.01344 1.62379 1.59128 1.01970 1.02069 1.19808 0.95013 0.93751 0.85009 1.21120 1.21862 1.21517 0.90017 0.91886 1.24979 0.95304 0.95221 0.99059 1.69951 1.32094 1.29200 1.22535 0.86516 0.80039 0.78756 0.82221 1.20753 1.21262 1.19764 1.21730 0.97155 0.98587 0.88933 1.23838 1.04911 1.02122 0.93913 1.85539 1.57939 1.44708 0.98252 1.21919 1.01049 0.99543 0.97610 1.21169 0.96555 0.95276 0.99977 1.21065 1.01636 1.01547 0.90938 1.17675 0.96369 0.94644 0.85129 1.91495 1.79411 1.80590 1.60543 1.21048 0.97900 0.96017 1.00600 1.20629 0.99519 0.99867 0.90001 0.91145 0.93312 0.93578 0.89818 0.93139 0.97672 0.95595 0.92891 0.94187 0.90476 0.88556 0.89388 0.84459 0.84426 0.84365 0.84455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.27 9.26 37.15 0.34 -2.92 16 2 C 0.06 1.04 5.67 -3.83 -0.02 1.02 16 3 N -0.53 -10.68 4.69 -236.08 -1.11 -11.79 16 4 C 0.19 4.70 4.54 -4.98 -0.02 4.68 16 5 C -0.51 -13.74 8.39 -34.44 -0.29 -14.03 16 6 H 0.06 1.70 7.39 -52.48 -0.39 1.31 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.11 13.29 55.43 0.74 -25.38 16 9 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 13 C 0.07 1.10 4.75 -3.82 -0.02 1.09 16 14 C -0.10 -1.34 4.26 37.16 0.16 -1.18 16 15 S -0.11 -1.37 21.92 -107.50 -2.36 -3.72 16 16 C -0.09 -1.00 6.11 -39.06 -0.24 -1.23 16 17 C -0.11 -1.14 9.36 -39.37 -0.37 -1.51 16 18 C -0.13 -1.31 10.02 -39.54 -0.40 -1.71 16 19 C 0.08 0.86 7.30 -39.41 -0.29 0.58 16 20 F -0.14 -1.53 17.26 2.25 0.04 -1.49 16 21 C -0.14 -1.25 10.02 -39.55 -0.40 -1.64 16 22 C -0.08 -0.75 9.79 -39.38 -0.39 -1.14 16 23 H 0.07 1.42 6.28 -51.93 -0.33 1.09 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.73 6.33 -51.93 -0.33 0.41 16 26 H 0.08 1.66 6.98 -51.93 -0.36 1.30 16 27 H 0.05 0.77 6.40 -51.92 -0.33 0.44 16 28 H 0.01 0.15 6.02 -51.93 -0.31 -0.17 16 29 H 0.03 0.69 7.91 -51.93 -0.41 0.28 16 30 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.04 0.68 6.06 -51.93 -0.31 0.36 16 32 H 0.08 1.34 7.92 -51.93 -0.41 0.93 16 33 H 0.10 1.30 7.73 -51.93 -0.40 0.90 16 34 H 0.09 1.13 6.14 -51.93 -0.32 0.81 16 35 H 0.14 1.40 5.88 -52.49 -0.31 1.09 16 36 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 37 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 38 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 LS Contribution 324.60 15.07 4.89 4.89 Total: -1.00 -28.58 324.60 -9.88 -38.46 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -5.04 Total: -0.60 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -2.02 Total: -16.56 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: -0.37 Total: -37.17 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.37 SS G_CDS: -2.36 Total: -3.72 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.58 -9.88 -38.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362173353.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.425 kcal (2) G-P(sol) polarization free energy of solvation -28.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds