Wall clock time and date at job start Tue Mar 31 2020 06:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99939 * 2 1 4 4 H 1.48500 * 109.46934 * 269.99576 * 3 2 1 5 5 H 1.48499 * 109.47439 * 29.99920 * 3 2 1 6 6 H 1.48497 * 109.46875 * 150.00213 * 3 2 1 7 7 C 1.37877 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99892 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00326 * 180.02562 * 7 2 1 10 10 N 1.46901 * 109.47462 * 180.02562 * 9 7 2 11 11 C 1.46955 * 110.99930 * 58.56942 * 10 9 7 12 12 C 1.53547 * 109.54796 * 164.27305 * 11 10 9 13 13 C 1.50723 * 107.82972 * 48.84586 * 12 11 10 14 14 C 1.39943 * 129.02108 * 164.33250 * 13 12 11 15 15 C 1.36275 * 106.51579 * 180.22015 * 14 13 12 16 16 C 1.47785 * 125.89072 * 179.71920 * 15 14 13 17 17 C 1.39593 * 120.14623 * 359.72502 * 16 15 14 18 18 C 1.37958 * 119.85191 * 179.74333 * 17 16 15 19 19 C 1.38355 * 120.14275 * 0.55499 * 18 17 16 20 20 C 1.38363 * 120.30058 * 359.69868 * 19 18 17 21 21 C 1.37953 * 120.14092 * 0.02562 * 20 19 18 22 22 O 1.34954 * 108.21646 * 359.97438 * 15 14 13 23 23 C 1.33659 * 109.37301 * 359.93008 * 22 15 14 24 24 C 1.47253 * 110.99836 * 293.95405 * 10 9 7 25 25 H 0.96996 * 119.99776 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47527 * 59.99923 * 9 7 2 27 27 H 1.09002 * 109.46832 * 300.00247 * 9 7 2 28 28 H 1.09002 * 109.46116 * 284.29986 * 11 10 9 29 29 H 1.08996 * 109.45861 * 44.26495 * 11 10 9 30 30 H 1.08996 * 109.78668 * 289.26717 * 12 11 10 31 31 H 1.09006 * 109.79443 * 168.42461 * 12 11 10 32 32 H 1.08004 * 126.74340 * 0.20019 * 14 13 12 33 33 H 1.08002 * 120.07415 * 0.02562 * 17 16 15 34 34 H 1.07995 * 119.92871 * 180.29195 * 18 17 16 35 35 H 1.08005 * 119.84983 * 179.71350 * 19 18 17 36 36 H 1.07995 * 119.93003 * 180.02562 * 20 19 18 37 37 H 1.08006 * 120.07144 * 180.02562 * 21 20 19 38 38 H 1.08991 * 109.69892 * 56.13445 * 24 10 9 39 39 H 1.09007 * 109.72727 * 295.56006 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5115 -1.1941 0.0011 10 7 4.0012 -2.5791 0.0010 11 6 3.5027 -3.3138 -1.1700 12 6 4.3227 -4.5983 -1.3579 13 6 4.3940 -5.2993 -0.0255 14 6 4.7614 -6.6198 0.2568 15 6 4.6599 -6.7699 1.6074 16 6 4.9441 -8.0062 2.3656 17 6 5.3522 -9.1611 1.6959 18 6 5.6210 -10.3103 2.4102 19 6 5.4757 -10.3232 3.7860 20 6 5.0664 -9.1836 4.4555 21 6 4.7999 -8.0261 3.7538 22 8 4.2498 -5.5964 2.1327 23 6 4.0892 -4.7034 1.1512 24 6 3.6504 -3.2629 1.2570 25 1 -0.4849 0.8400 0.0004 26 1 3.8746 -0.6801 0.8911 27 1 3.8752 -0.6804 -0.8889 28 1 2.4545 -3.5711 -1.0181 29 1 3.5982 -2.6892 -2.0582 30 1 5.3278 -4.3481 -1.6974 31 1 3.8354 -5.2438 -2.0887 32 1 5.0653 -7.3724 -0.4558 33 1 5.4618 -9.1535 0.6215 34 1 5.9414 -11.2031 1.8939 35 1 5.6830 -11.2269 4.3400 36 1 4.9554 -9.2002 5.5296 37 1 4.4809 -7.1370 4.2776 38 1 2.5725 -3.2175 1.4114 39 1 4.1616 -2.7837 2.0921 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000371821052.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:41 Heat of formation + Delta-G solvation = 44.901182 kcal Electronic energy + Delta-G solvation = -21110.032536 eV Core-core repulsion = 17983.902645 eV Total energy + Delta-G solvation = -3126.129891 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.44816 -39.09845 -37.58988 -33.79490 -32.80268 -31.99942 -31.14059 -29.82890 -29.43770 -26.89631 -24.39688 -23.18040 -22.69861 -22.27847 -21.00954 -20.31244 -18.48604 -17.51480 -16.93808 -16.13297 -16.03604 -15.42493 -15.01151 -14.66679 -14.36488 -14.07273 -13.67142 -13.50587 -13.24978 -12.96413 -12.83166 -12.73081 -12.51862 -12.20949 -11.70816 -11.55493 -11.40022 -11.20622 -10.97603 -10.70183 -10.47484 -10.41923 -9.95364 -9.86038 -9.59541 -9.15148 -9.02011 -8.67055 -7.60834 -7.32529 -6.17718 -4.19472 0.73210 1.21521 2.20845 2.86445 2.91726 3.23674 3.31842 3.34696 3.74305 4.33302 4.52730 4.69222 4.76558 4.83913 4.92466 5.12950 5.16463 5.20038 5.25297 5.35126 5.52117 5.68311 5.77721 5.81002 5.90468 6.00211 6.06674 6.12065 6.19382 6.28680 6.30253 6.38751 6.48232 6.53019 6.66471 6.75841 6.81356 6.84721 6.96225 7.37294 7.46337 7.88719 7.89627 8.34685 8.83024 9.43932 10.94913 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.035502 B = 0.003344 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.506853 B = 8370.323929 C = 8769.522471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.075 3.925 3 Si 0.879 3.121 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.559 4.559 8 H 0.076 0.924 9 C 0.156 3.844 10 N -0.529 5.529 11 C 0.061 3.939 12 C -0.046 4.046 13 C -0.179 4.179 14 C -0.166 4.166 15 C -0.008 4.008 16 C 0.003 3.997 17 C -0.106 4.106 18 C -0.116 4.116 19 C -0.125 4.125 20 C -0.116 4.116 21 C -0.109 4.109 22 O -0.162 6.162 23 C 0.015 3.985 24 C 0.139 3.861 25 H 0.265 0.735 26 H 0.033 0.967 27 H 0.033 0.967 28 H 0.046 0.954 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.147 0.853 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.078 0.922 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.193 -17.477 3.802 21.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.129 4.129 3 Si 0.706 3.294 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.598 4.598 8 H 0.094 0.906 9 C 0.030 3.970 10 N -0.254 5.254 11 C -0.067 4.067 12 C -0.084 4.084 13 C -0.180 4.180 14 C -0.186 4.186 15 C -0.057 4.057 16 C 0.002 3.998 17 C -0.124 4.124 18 C -0.134 4.134 19 C -0.143 4.143 20 C -0.134 4.134 21 C -0.127 4.127 22 O -0.058 6.058 23 C -0.037 4.037 24 C 0.011 3.989 25 H 0.075 0.925 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.164 0.836 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.095 0.905 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.491 -17.282 4.081 21.151 hybrid contribution -0.612 0.834 -0.058 1.036 sum 10.879 -16.449 4.023 20.127 Atomic orbital electron populations 1.69926 1.06411 1.27175 1.49827 1.24965 0.94702 0.99281 0.93934 0.86793 0.80435 0.83453 0.78739 1.20077 1.21232 1.18711 1.21684 0.90499 0.94852 1.52746 0.90647 1.20231 0.94765 0.84448 0.97555 1.62369 1.59106 1.03812 1.00120 1.22004 0.96861 0.93547 0.94285 1.20235 1.00899 0.95380 0.91883 1.20112 1.07455 0.93794 0.96667 1.21322 1.05793 0.97268 0.94183 1.20324 1.08219 0.85601 0.91571 1.17779 0.99965 0.89479 0.92530 1.21048 0.99578 0.91627 1.00102 1.21021 1.00277 0.97783 0.94286 1.21225 1.00128 0.98337 0.94596 1.21087 0.99440 0.92796 1.00038 1.21314 0.99483 0.98808 0.93114 1.83802 1.66633 1.18829 1.36538 1.22852 1.02482 0.92920 0.85430 1.20521 1.00274 0.83109 0.94954 0.92539 0.94926 0.94885 0.93589 0.90430 0.90746 0.91138 0.83564 0.85491 0.85619 0.85988 0.85733 0.85415 0.90478 0.89377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.68 13.96 55.43 0.77 -25.91 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 20.74 27.47 -169.99 -4.67 16.07 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.26 -5.94 6.54 56.52 0.37 -5.57 16 7 C -0.56 -15.02 8.24 -34.44 -0.28 -15.30 16 8 H 0.08 2.21 6.26 -52.49 -0.33 1.88 16 9 C 0.16 3.61 4.13 -4.98 -0.02 3.59 16 10 N -0.53 -10.90 4.81 -236.66 -1.14 -12.04 16 11 C 0.06 1.17 4.87 -3.51 -0.02 1.15 16 12 C -0.05 -0.74 6.51 -27.59 -0.18 -0.92 16 13 C -0.18 -3.08 6.01 -104.99 -0.63 -3.71 16 14 C -0.17 -2.52 10.25 -39.65 -0.41 -2.93 16 15 C -0.01 -0.13 7.04 -36.39 -0.26 -0.38 16 16 C 0.00 0.04 5.87 -104.99 -0.62 -0.58 16 17 C -0.11 -1.14 9.56 -39.18 -0.37 -1.52 16 18 C -0.12 -1.04 10.03 -39.64 -0.40 -1.44 16 19 C -0.12 -1.10 10.04 -39.49 -0.40 -1.49 16 20 C -0.12 -1.13 10.03 -39.64 -0.40 -1.53 16 21 C -0.11 -1.32 9.72 -39.18 -0.38 -1.70 16 22 O -0.16 -2.88 10.40 5.58 0.06 -2.83 16 23 C 0.02 0.28 7.33 -35.21 -0.26 0.02 16 24 C 0.14 2.74 5.66 -4.66 -0.03 2.72 16 25 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.03 0.76 7.18 -51.93 -0.37 0.38 16 27 H 0.03 0.76 7.54 -51.93 -0.39 0.37 16 28 H 0.05 0.97 6.94 -51.93 -0.36 0.61 16 29 H 0.08 1.45 7.98 -51.93 -0.41 1.03 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.15 1.77 7.27 -52.48 -0.38 1.39 16 33 H 0.13 1.17 6.99 -52.49 -0.37 0.80 16 34 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 35 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 36 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.13 1.53 7.91 -52.48 -0.42 1.12 16 38 H 0.08 1.67 6.79 -51.93 -0.35 1.32 16 39 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 319.91 15.07 4.82 4.82 Total: -1.00 -30.22 319.91 -9.98 -40.20 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -5.09 Total: 1.73 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: -4.74 Total: -22.05 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: -0.36 Total: -37.94 kcal Atomic # 8 Polarization: -2.88 SS G_CDS: 0.06 Total: -2.83 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.67 Total: 16.07 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.22 -9.98 -40.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371821052.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.099 kcal (2) G-P(sol) polarization free energy of solvation -30.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds