Wall clock time and date at job start Tue Mar 31 2020 06:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99939 * 2 1 4 4 H 1.48500 * 109.46934 * 269.99576 * 3 2 1 5 5 H 1.48499 * 109.47439 * 29.99920 * 3 2 1 6 6 H 1.48497 * 109.46875 * 150.00213 * 3 2 1 7 7 C 1.37877 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99892 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00326 * 180.02562 * 7 2 1 10 10 N 1.46901 * 109.47462 * 180.02562 * 9 7 2 11 11 C 1.46955 * 110.99930 * 58.56942 * 10 9 7 12 12 C 1.53547 * 109.54796 * 164.27305 * 11 10 9 13 13 C 1.50723 * 107.82972 * 48.84586 * 12 11 10 14 14 C 1.39943 * 129.02108 * 164.33250 * 13 12 11 15 15 C 1.36275 * 106.51579 * 180.22015 * 14 13 12 16 16 C 1.47785 * 125.89072 * 179.71920 * 15 14 13 17 17 C 1.39593 * 120.14623 * 359.72502 * 16 15 14 18 18 C 1.37958 * 119.85191 * 179.74333 * 17 16 15 19 19 C 1.38355 * 120.14275 * 0.55499 * 18 17 16 20 20 C 1.38363 * 120.30058 * 359.69868 * 19 18 17 21 21 C 1.37953 * 120.14092 * 0.02562 * 20 19 18 22 22 O 1.34954 * 108.21646 * 359.97438 * 15 14 13 23 23 C 1.33659 * 109.37301 * 359.93008 * 22 15 14 24 24 C 1.47253 * 110.99836 * 293.95405 * 10 9 7 25 25 H 0.96996 * 119.99776 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47527 * 59.99923 * 9 7 2 27 27 H 1.09002 * 109.46832 * 300.00247 * 9 7 2 28 28 H 1.09002 * 109.46116 * 284.29986 * 11 10 9 29 29 H 1.08996 * 109.45861 * 44.26495 * 11 10 9 30 30 H 1.08996 * 109.78668 * 289.26717 * 12 11 10 31 31 H 1.09006 * 109.79443 * 168.42461 * 12 11 10 32 32 H 1.08004 * 126.74340 * 0.20019 * 14 13 12 33 33 H 1.08002 * 120.07415 * 0.02562 * 17 16 15 34 34 H 1.07995 * 119.92871 * 180.29195 * 18 17 16 35 35 H 1.08005 * 119.84983 * 179.71350 * 19 18 17 36 36 H 1.07995 * 119.93003 * 180.02562 * 20 19 18 37 37 H 1.08006 * 120.07144 * 180.02562 * 21 20 19 38 38 H 1.08991 * 109.69892 * 56.13445 * 24 10 9 39 39 H 1.09007 * 109.72727 * 295.56006 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5115 -1.1941 0.0011 10 7 4.0012 -2.5791 0.0010 11 6 3.5027 -3.3138 -1.1700 12 6 4.3227 -4.5983 -1.3579 13 6 4.3940 -5.2993 -0.0255 14 6 4.7614 -6.6198 0.2568 15 6 4.6599 -6.7699 1.6074 16 6 4.9441 -8.0062 2.3656 17 6 5.3522 -9.1611 1.6959 18 6 5.6210 -10.3103 2.4102 19 6 5.4757 -10.3232 3.7860 20 6 5.0664 -9.1836 4.4555 21 6 4.7999 -8.0261 3.7538 22 8 4.2498 -5.5964 2.1327 23 6 4.0892 -4.7034 1.1512 24 6 3.6504 -3.2629 1.2570 25 1 -0.4849 0.8400 0.0004 26 1 3.8746 -0.6801 0.8911 27 1 3.8752 -0.6804 -0.8889 28 1 2.4545 -3.5711 -1.0181 29 1 3.5982 -2.6892 -2.0582 30 1 5.3278 -4.3481 -1.6974 31 1 3.8354 -5.2438 -2.0887 32 1 5.0653 -7.3724 -0.4558 33 1 5.4618 -9.1535 0.6215 34 1 5.9414 -11.2031 1.8939 35 1 5.6830 -11.2269 4.3400 36 1 4.9554 -9.2002 5.5296 37 1 4.4809 -7.1370 4.2776 38 1 2.5725 -3.2175 1.4114 39 1 4.1616 -2.7837 2.0921 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000371821052.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:41 Heat of formation + Delta-G solvation = 27.292431 kcal Electronic energy + Delta-G solvation = -21110.796109 eV Core-core repulsion = 17983.902645 eV Total energy + Delta-G solvation = -3126.893463 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.73405 -39.92948 -39.16943 -35.36610 -34.41068 -33.35354 -31.95658 -31.21645 -30.87688 -28.54891 -25.83729 -24.61603 -23.73104 -23.45555 -22.39525 -21.65644 -19.95656 -18.86377 -18.56370 -17.41376 -17.18875 -16.65814 -16.43457 -16.11343 -15.70324 -15.42019 -14.95225 -14.68030 -14.47568 -14.38168 -14.18738 -13.83853 -13.80704 -13.69083 -13.31522 -13.23546 -12.77264 -12.38287 -12.27311 -12.19638 -12.02681 -11.93198 -11.73248 -11.59387 -10.90848 -10.81132 -10.15761 -9.92556 -9.20669 -8.69325 -8.33086 -6.40085 -0.22517 0.44203 1.01942 1.37542 1.38995 1.50782 1.65315 1.68181 2.33661 2.90842 3.02235 3.17501 3.44725 3.78199 3.86099 4.01767 4.05975 4.19951 4.31751 4.32917 4.36833 4.50605 4.55144 4.58317 4.63320 4.76471 4.86745 4.93721 4.99353 5.02385 5.04696 5.08342 5.14950 5.19400 5.42450 5.47198 5.50232 5.55815 5.63327 5.95303 6.00885 6.12403 6.23892 6.28614 6.65967 7.27276 8.83102 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.035502 B = 0.003344 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.506853 B = 8370.323929 C = 8769.522471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.013 3.987 3 Si 0.951 3.049 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.243 1.243 7 C -0.557 4.557 8 H 0.033 0.967 9 C 0.162 3.838 10 N -0.523 5.523 11 C 0.061 3.939 12 C -0.037 4.037 13 C -0.177 4.177 14 C -0.173 4.173 15 C -0.002 4.002 16 C -0.033 4.033 17 C -0.106 4.106 18 C -0.115 4.115 19 C -0.115 4.115 20 C -0.121 4.121 21 C -0.128 4.128 22 O -0.179 6.179 23 C -0.027 4.027 24 C 0.146 3.854 25 H 0.267 0.733 26 H 0.037 0.963 27 H 0.045 0.955 28 H 0.013 0.987 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.181 0.819 33 H 0.143 0.857 34 H 0.159 0.841 35 H 0.155 0.845 36 H 0.146 0.854 37 H 0.114 0.886 38 H 0.042 0.958 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.965 -19.583 3.468 24.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.186 4.186 3 Si 0.774 3.226 4 H -0.188 1.188 5 H -0.212 1.212 6 H -0.166 1.166 7 C -0.595 4.595 8 H 0.051 0.949 9 C 0.035 3.965 10 N -0.248 5.248 11 C -0.067 4.067 12 C -0.074 4.074 13 C -0.178 4.178 14 C -0.192 4.192 15 C -0.051 4.051 16 C -0.033 4.033 17 C -0.123 4.123 18 C -0.132 4.132 19 C -0.133 4.133 20 C -0.139 4.139 21 C -0.146 4.146 22 O -0.076 6.076 23 C -0.078 4.078 24 C 0.018 3.982 25 H 0.076 0.924 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.031 0.969 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.198 0.802 33 H 0.161 0.839 34 H 0.177 0.823 35 H 0.173 0.827 36 H 0.164 0.836 37 H 0.132 0.868 38 H 0.060 0.940 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 14.282 -19.409 3.744 24.386 hybrid contribution -1.487 1.218 0.147 1.928 sum 12.795 -18.191 3.890 22.578 Atomic orbital electron populations 1.70083 1.08483 1.28318 1.51805 1.25935 0.95505 1.03549 0.93561 0.85655 0.79548 0.78003 0.79427 1.18844 1.21238 1.16611 1.21887 0.92608 0.93299 1.51744 0.94859 1.20125 0.91929 0.86376 0.98036 1.62396 1.58368 1.03039 1.00946 1.22053 0.95709 0.95212 0.93737 1.20234 1.01426 0.93754 0.91975 1.20425 1.06206 0.94743 0.96448 1.21621 1.06104 0.96970 0.94491 1.21050 1.06151 0.85447 0.92462 1.17974 1.02885 0.89431 0.93051 1.21332 0.98669 0.91213 1.01126 1.21456 0.99037 0.98149 0.94571 1.21693 0.97815 0.98880 0.94900 1.21381 0.98951 0.92301 1.01218 1.21403 1.00428 0.99585 0.93179 1.83765 1.67250 1.19660 1.36910 1.22536 1.06046 0.92756 0.86493 1.20274 0.98263 0.84831 0.94803 0.92422 0.94509 0.93743 0.96893 0.89958 0.88854 0.88605 0.80179 0.83892 0.82326 0.82707 0.83640 0.86753 0.93993 0.88914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.67 13.96 21.45 0.30 -58.37 16 2 C 0.01 0.73 5.47 84.65 0.46 1.20 16 3 Si 0.95 42.91 27.47 68.60 1.88 44.80 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 5 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.24 -10.11 6.54 99.48 0.65 -9.46 16 7 C -0.56 -31.18 8.24 25.60 0.21 -30.97 16 8 H 0.03 2.10 6.26 -2.91 -0.02 2.08 16 9 C 0.16 7.56 4.13 85.56 0.35 7.91 16 10 N -0.52 -22.03 4.81 -902.65 -4.34 -26.37 16 11 C 0.06 2.38 4.87 86.48 0.42 2.80 16 12 C -0.04 -1.13 6.51 30.04 0.20 -0.93 16 13 C -0.18 -6.04 6.01 -20.10 -0.12 -6.16 16 14 C -0.17 -5.02 10.25 22.23 0.23 -4.79 16 15 C 0.00 -0.06 7.04 24.34 0.17 0.11 16 16 C -0.03 -0.85 5.87 -20.10 -0.12 -0.97 16 17 C -0.11 -2.00 9.56 22.53 0.22 -1.79 16 18 C -0.11 -1.61 10.03 22.23 0.22 -1.39 16 19 C -0.12 -1.58 10.04 22.33 0.22 -1.36 16 20 C -0.12 -2.11 10.03 22.23 0.22 -1.88 16 21 C -0.13 -3.07 9.72 22.53 0.22 -2.85 16 22 O -0.18 -6.67 10.40 -2.95 -0.03 -6.70 16 23 C -0.03 -1.06 7.33 25.10 0.18 -0.87 16 24 C 0.15 6.13 5.66 85.57 0.48 6.61 16 25 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 26 H 0.04 1.69 7.18 -2.39 -0.02 1.67 16 27 H 0.04 1.98 7.54 -2.39 -0.02 1.97 16 28 H 0.01 0.58 6.94 -2.39 -0.02 0.56 16 29 H 0.08 3.07 7.98 -2.39 -0.02 3.05 16 30 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16 32 H 0.18 3.80 7.27 -2.91 -0.02 3.77 16 33 H 0.14 2.15 6.99 -2.91 -0.02 2.13 16 34 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 35 H 0.16 1.13 8.06 -2.91 -0.02 1.10 16 36 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 37 H 0.11 2.91 7.91 -2.91 -0.02 2.89 16 38 H 0.04 2.01 6.79 -2.39 -0.02 2.00 16 39 H 0.09 3.65 8.14 -2.38 -0.02 3.63 16 Total: -1.00 -69.11 319.91 2.39 -66.72 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 1.00 Total: 15.23 kcal Atomic # 6 Polarization: -38.90 SS G_CDS: 3.58 Total: -35.32 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -4.04 Total: -84.73 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -0.03 Total: -6.70 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.88 Total: 44.80 kcal Total: -69.11 2.39 -66.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371821052.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.014 kcal (2) G-P(sol) polarization free energy of solvation -69.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds