Wall clock time and date at job start Tue Mar 31 2020 05:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47017 * 2 1 4 4 C 1.50694 * 109.46943 * 119.99950 * 2 1 3 5 5 O 1.21283 * 120.00049 * 120.00660 * 4 2 1 6 6 N 1.34780 * 120.00250 * 299.99522 * 4 2 1 7 7 C 1.39126 * 120.00085 * 185.72390 * 6 4 2 8 8 C 1.38650 * 120.28332 * 19.25060 * 7 6 4 9 9 C 1.38220 * 120.02995 * 180.25875 * 8 7 6 10 10 C 1.38872 * 120.61860 * 359.73863 * 9 8 7 11 11 C 1.36461 * 120.57543 * 0.02562 * 10 9 8 12 12 C 1.40745 * 119.94197 * 0.02562 * 11 10 9 13 13 C 1.41073 * 120.29532 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99372 * 206.47833 * 13 12 11 15 15 C 1.39952 * 120.00295 * 26.47604 * 13 12 11 16 16 N 1.30852 * 119.99975 * 201.35264 * 15 13 12 17 17 Si 1.86796 * 120.00098 * 21.35518 * 15 13 12 18 18 H 1.48497 * 109.46957 * 269.99926 * 17 15 13 19 19 H 1.48500 * 109.47087 * 29.99886 * 17 15 13 20 20 H 1.48502 * 109.46987 * 150.00092 * 17 15 13 21 21 C 1.53000 * 109.47210 * 240.00338 * 2 1 3 22 22 C 1.52994 * 109.47537 * 64.99864 * 21 2 1 23 23 F 1.39896 * 109.47163 * 185.00109 * 21 2 1 24 24 F 1.39902 * 109.47057 * 304.99801 * 21 2 1 25 25 H 1.09003 * 109.46973 * 60.00174 * 1 2 3 26 26 H 1.08994 * 109.47259 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47083 * 300.00217 * 1 2 3 28 28 H 0.96996 * 119.99619 * 5.73325 * 6 4 2 29 29 H 1.07994 * 119.98201 * 359.97438 * 8 7 6 30 30 H 1.08002 * 119.69169 * 179.76652 * 9 8 7 31 31 H 1.07996 * 119.71250 * 180.02562 * 10 9 8 32 32 H 1.08002 * 120.03062 * 180.02562 * 11 10 9 33 33 H 0.97007 * 120.00267 * 354.94599 * 16 15 13 34 34 H 1.09001 * 109.47212 * 59.99824 * 22 21 2 35 35 H 1.09001 * 109.47603 * 180.02562 * 22 21 2 36 36 H 1.09005 * 109.46952 * 300.00468 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7296 -1.6964 1.1192 6 7 1.7067 -0.2499 2.4546 7 6 2.2654 -0.8319 3.5880 8 6 3.4236 -1.5875 3.4873 9 6 3.9712 -2.1678 4.6160 10 6 3.3751 -1.9981 5.8587 11 6 2.2374 -1.2556 5.9872 12 6 1.6588 -0.6548 4.8536 13 6 0.4825 0.1140 4.9778 14 1 -0.1886 0.2137 4.1375 15 6 0.1851 0.7473 6.1899 16 7 -1.0465 1.0966 6.4607 17 14 1.5464 1.0942 7.4211 18 1 1.6849 -0.0607 8.3443 19 1 2.8260 1.3059 6.6977 20 1 1.2106 2.3131 8.2000 21 6 2.0400 -0.7212 -1.2493 22 6 1.6353 0.0689 -2.4953 23 9 3.4342 -0.8216 -1.1932 24 9 1.4822 -2.0028 -1.3082 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.0828 0.4872 2.5453 29 1 3.8955 -1.7264 2.5259 30 1 4.8715 -2.7584 4.5307 31 1 3.8157 -2.4578 6.7310 32 1 1.7814 -1.1290 6.9580 33 1 -1.7407 0.9836 5.7926 34 1 2.0699 1.0675 -2.4494 35 1 1.9983 -0.4451 -3.3854 36 1 0.5489 0.1472 -2.5389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000410828867.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:33 Heat of formation + Delta-G solvation = -123.594525 kcal Electronic energy + Delta-G solvation = -22685.352638 eV Core-core repulsion = 18997.686695 eV Total energy + Delta-G solvation = -3687.665943 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.78234 -46.75663 -39.89755 -37.53382 -34.76328 -33.94016 -33.77729 -30.27509 -30.16326 -28.38676 -25.56745 -24.77439 -22.72181 -21.51017 -20.36172 -19.51393 -18.27395 -17.48901 -17.40099 -16.77797 -16.10415 -15.64515 -14.91926 -14.85365 -14.31220 -14.00675 -13.65668 -13.38648 -13.25372 -13.09434 -12.96560 -12.83913 -12.59031 -12.54227 -12.28489 -12.08659 -12.05475 -11.76524 -11.53163 -10.94850 -10.82365 -10.77301 -10.52271 -9.90005 -9.73429 -9.49574 -9.13764 -8.80970 -7.77682 -7.40767 -7.03903 -4.58353 2.36081 2.69238 3.15741 3.17154 3.33831 3.44313 3.51921 3.76186 3.95650 4.00388 4.35216 4.50045 4.52297 4.86782 4.95201 5.10146 5.31872 5.37509 5.44122 5.51133 5.56667 5.70423 5.99557 6.10399 6.20782 6.37409 6.63983 6.79751 6.99748 7.29912 7.33348 7.48353 7.64380 7.82610 7.89275 8.16919 8.30881 8.44911 8.64923 8.78565 9.91201 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.023445 B = 0.005343 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.017038 B = 5239.690327 C = 6076.038477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.156 4.156 3 H 0.122 0.878 4 C 0.499 3.501 5 O -0.519 6.519 6 N -0.631 5.631 7 C 0.022 3.978 8 C -0.091 4.091 9 C -0.229 4.229 10 C -0.087 4.087 11 C -0.234 4.234 12 C 0.087 3.913 13 C -0.525 4.525 14 H 0.074 0.926 15 C 0.047 3.953 16 N -0.812 5.812 17 Si 1.074 2.926 18 H -0.275 1.275 19 H -0.263 1.263 20 H -0.291 1.291 21 C 0.310 3.690 22 C -0.195 4.195 23 F -0.191 7.191 24 F -0.193 7.193 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.406 0.594 29 H 0.131 0.869 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.286 0.714 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.604 2.938 -12.140 12.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 H 0.140 0.860 4 C 0.285 3.715 5 O -0.396 6.396 6 N -0.272 5.272 7 C -0.072 4.072 8 C -0.111 4.111 9 C -0.249 4.249 10 C -0.106 4.106 11 C -0.253 4.253 12 C 0.083 3.917 13 C -0.553 4.553 14 H 0.092 0.908 15 C -0.173 4.173 16 N -0.434 5.434 17 Si 0.901 3.099 18 H -0.202 1.202 19 H -0.188 1.188 20 H -0.218 1.218 21 C 0.274 3.726 22 C -0.253 4.253 23 F -0.172 7.172 24 F -0.174 7.174 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.242 0.758 29 H 0.149 0.851 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.126 0.874 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.102 0.898 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.277 2.868 -10.767 11.373 hybrid contribution -0.793 -0.410 -1.454 1.707 sum 1.483 2.458 -12.221 12.554 Atomic orbital electron populations 1.21844 0.90772 1.04235 1.03738 1.22462 1.00019 1.02266 0.93112 0.86007 1.20035 0.82128 0.85039 0.84320 1.90652 1.37672 1.25216 1.86092 1.42866 1.44978 1.35235 1.04143 1.17733 0.96378 1.06816 0.86247 1.21184 0.93951 0.96930 0.99084 1.20363 1.02887 1.08909 0.92724 1.20400 0.95802 0.98121 0.96251 1.20710 1.00562 1.05998 0.98078 1.17477 0.91946 0.92483 0.89840 1.20346 1.05671 1.28787 1.00543 0.90793 1.27244 0.99891 0.91534 0.98660 1.70574 1.00986 1.36734 1.35132 0.83573 0.74774 0.76322 0.75270 1.20220 1.18796 1.21801 1.20590 0.75362 0.80637 0.96048 1.22834 1.04561 1.01616 0.96273 1.93040 1.30303 1.96430 1.97412 1.93017 1.84917 1.42091 1.97334 0.90743 0.90863 0.90509 0.75815 0.85137 0.88594 0.88751 0.87361 0.90311 0.89229 0.89845 0.89024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.67 37.16 0.32 -1.30 16 2 C -0.16 -2.07 2.42 -91.77 -0.22 -2.29 16 3 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 4 C 0.50 9.40 6.77 -10.99 -0.07 9.32 16 5 O -0.52 -11.66 11.71 5.55 0.07 -11.60 16 6 N -0.63 -12.64 5.11 -9.48 -0.05 -12.68 16 7 C 0.02 0.53 6.54 -83.17 -0.54 -0.02 16 8 C -0.09 -2.16 8.78 -39.44 -0.35 -2.51 16 9 C -0.23 -5.14 10.04 -39.35 -0.39 -5.54 16 10 C -0.09 -1.94 9.97 -39.99 -0.40 -2.34 16 11 C -0.23 -5.65 7.33 -39.28 -0.29 -5.94 16 12 C 0.09 2.17 5.18 -106.65 -0.55 1.61 16 13 C -0.52 -13.15 8.75 -37.87 -0.33 -13.48 16 14 H 0.07 1.84 7.20 -52.49 -0.38 1.46 16 15 C 0.05 1.17 5.38 -17.33 -0.09 1.07 16 16 N -0.81 -20.71 13.66 55.55 0.76 -19.95 16 17 Si 1.07 23.54 25.01 -169.99 -4.25 19.29 16 18 H -0.28 -5.81 6.37 56.52 0.36 -5.45 16 19 H -0.26 -5.78 7.10 56.52 0.40 -5.38 16 20 H -0.29 -6.18 7.11 56.52 0.40 -5.77 16 21 C 0.31 4.21 1.50 -26.73 -0.04 4.17 16 22 C -0.20 -1.64 9.14 37.15 0.34 -1.30 16 23 F -0.19 -3.14 15.82 2.25 0.04 -3.11 16 24 F -0.19 -3.12 15.75 2.25 0.04 -3.08 16 25 H 0.07 0.57 6.56 -51.93 -0.34 0.22 16 26 H 0.07 0.91 7.68 -51.93 -0.40 0.51 16 27 H 0.08 0.83 7.45 -51.93 -0.39 0.44 16 28 H 0.41 7.31 6.60 -40.82 -0.27 7.04 16 29 H 0.13 3.12 5.39 -52.49 -0.28 2.83 16 30 H 0.10 1.92 8.06 -52.49 -0.42 1.49 16 31 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 32 H 0.11 2.57 4.35 -52.49 -0.23 2.34 16 33 H 0.29 7.04 8.73 -40.82 -0.36 6.69 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.09 0.60 6.57 -51.93 -0.34 0.26 16 LS Contribution 299.16 15.07 4.51 4.51 Total: -1.00 -30.38 299.16 -5.45 -35.83 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -3.93 Total: 9.34 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: -2.62 Total: -18.55 kcal Atomic # 7 Polarization: -33.35 SS G_CDS: 0.71 Total: -32.64 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.07 Total: -11.60 kcal Atomic # 9 Polarization: -6.26 SS G_CDS: 0.07 Total: -6.19 kcal Atomic # 14 Polarization: 23.54 SS G_CDS: -4.25 Total: 19.29 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.38 -5.45 -35.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410828867.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.761 kcal (2) G-P(sol) polarization free energy of solvation -30.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds