Wall clock time and date at job start Tue Mar 31 2020 05:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46845 * 2 1 4 4 C 1.53001 * 109.47182 * 120.00147 * 2 1 3 5 5 C 1.53003 * 109.46921 * 295.00141 * 4 2 1 6 6 F 1.39896 * 109.46997 * 65.00107 * 5 4 2 7 7 F 1.39898 * 109.46666 * 185.00070 * 5 4 2 8 8 C 1.50699 * 109.46817 * 240.00023 * 2 1 3 9 9 O 1.21281 * 120.00033 * 239.99233 * 8 2 1 10 10 N 1.34779 * 120.00032 * 59.72887 * 8 2 1 11 11 C 1.39238 * 119.99856 * 175.98374 * 10 8 2 12 12 C 1.39487 * 119.83043 * 215.00643 * 11 10 8 13 13 C 1.36374 * 120.16598 * 179.71894 * 12 11 10 14 14 C 1.40862 * 119.82737 * 0.57609 * 13 12 11 15 15 C 1.41158 * 120.16366 * 179.68061 * 14 13 12 16 16 H 1.08006 * 119.99699 * 214.80562 * 15 14 13 17 17 C 1.39901 * 120.00209 * 34.79852 * 15 14 13 18 18 N 1.30873 * 119.99743 * 355.55676 * 17 15 14 19 19 Si 1.86791 * 120.00194 * 175.54770 * 17 15 14 20 20 H 1.48500 * 109.47162 * 90.00262 * 19 17 15 21 21 H 1.48499 * 109.47487 * 210.00525 * 19 17 15 22 22 H 1.48500 * 109.47308 * 330.00540 * 19 17 15 23 23 C 1.40868 * 119.67657 * 359.69352 * 14 13 12 24 24 C 1.36375 * 119.82644 * 0.02562 * 23 14 13 25 25 H 1.08996 * 109.46978 * 299.99433 * 1 2 3 26 26 H 1.09000 * 109.47308 * 60.00299 * 1 2 3 27 27 H 1.09001 * 109.47291 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46905 * 54.99839 * 4 2 1 29 29 H 1.08995 * 109.46788 * 175.00132 * 4 2 1 30 30 H 1.08998 * 109.47272 * 304.99974 * 5 4 2 31 31 H 0.97004 * 119.99767 * 355.98171 * 10 8 2 32 32 H 1.08002 * 119.91038 * 359.97438 * 12 11 10 33 33 H 1.07998 * 120.08293 * 180.25197 * 13 12 11 34 34 H 0.97006 * 119.99912 * 179.97438 * 18 17 15 35 35 H 1.08000 * 120.08808 * 179.97438 * 23 14 13 36 36 H 1.08001 * 119.91969 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6352 0.0689 2.4953 6 9 0.2412 0.0721 2.6130 7 9 2.1976 -0.5278 3.6288 8 6 2.0323 -0.7104 -1.2305 9 8 2.7297 -1.6964 -1.1192 10 7 1.7022 -0.2531 -2.4546 11 6 2.2334 -0.8583 -3.5905 12 6 2.5378 -0.0850 -4.7107 13 6 3.0638 -0.6697 -5.8248 14 6 3.2882 -2.0602 -5.8467 15 6 3.8260 -2.6738 -6.9985 16 1 3.5099 -3.6680 -7.2782 17 6 4.7682 -1.9942 -7.7779 18 7 5.0865 -0.7579 -7.4896 19 14 5.5722 -2.8513 -9.2298 20 1 4.7616 -2.6197 -10.4523 21 1 6.9389 -2.3065 -9.4316 22 1 5.6554 -4.3092 -8.9600 23 6 2.9730 -2.8354 -4.7135 24 6 2.4530 -2.2356 -3.6046 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6054 -1.7198 1.2951 29 1 3.1263 -0.7994 1.2055 30 1 1.9949 1.0941 2.4082 31 1 1.0944 0.4976 -2.5442 32 1 2.3603 0.9802 -4.6941 33 1 3.3027 -0.0691 -6.6899 34 1 5.7401 -0.2868 -8.0298 35 1 3.1420 -3.9021 -4.7231 36 1 2.2104 -2.8286 -2.7351 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411264259.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:06 Heat of formation + Delta-G solvation = -130.168264 kcal Electronic energy + Delta-G solvation = -21469.467256 eV Core-core repulsion = 17781.516255 eV Total energy + Delta-G solvation = -3687.951001 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.19864 -47.20503 -39.95652 -37.47218 -35.01118 -34.47591 -32.91824 -29.75819 -29.43578 -28.59991 -25.46163 -24.45222 -22.60213 -21.38890 -20.61962 -19.43316 -18.00480 -17.61746 -17.33531 -16.83012 -16.53600 -15.70900 -15.22224 -15.09329 -14.39811 -13.97696 -13.94315 -13.83365 -13.60270 -13.13511 -13.05504 -12.70623 -12.53232 -12.16612 -11.80959 -11.73676 -11.43528 -11.38502 -11.33368 -11.17489 -11.01615 -10.98310 -10.73993 -10.02883 -9.51967 -9.44880 -9.12318 -8.90056 -7.57706 -6.89478 -6.64124 -4.36722 2.50060 2.98856 3.06067 3.08681 3.12718 3.28066 3.40315 3.79926 3.96412 4.12292 4.23032 4.41310 4.67437 4.80959 4.85556 4.94396 5.25050 5.52548 5.57292 5.63569 5.70964 5.89057 6.04997 6.16028 6.41707 6.72275 6.88524 7.04401 7.17973 7.27022 7.61136 7.71193 7.83367 8.03717 8.22509 8.28920 8.59344 8.70024 8.90498 8.97289 10.26912 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.046403 B = 0.003020 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.261273 B = 9268.570707 C = 9437.773674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.108 4.108 3 H 0.100 0.900 4 C -0.152 4.152 5 C 0.263 3.737 6 F -0.202 7.202 7 F -0.207 7.207 8 C 0.504 3.496 9 O -0.531 6.531 10 N -0.648 5.648 11 C 0.001 3.999 12 C -0.120 4.120 13 C -0.141 4.141 14 C 0.100 3.900 15 C -0.461 4.461 16 H 0.076 0.924 17 C 0.069 3.931 18 N -0.812 5.812 19 Si 0.916 3.084 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.263 1.263 23 C -0.206 4.206 24 C -0.085 4.085 25 H 0.086 0.914 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.396 0.604 32 H 0.091 0.909 33 H 0.132 0.868 34 H 0.278 0.722 35 H 0.096 0.904 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.855 6.037 12.728 15.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.130 4.130 3 H 0.118 0.882 4 C -0.191 4.191 5 C 0.209 3.791 6 F -0.184 7.184 7 F -0.188 7.188 8 C 0.290 3.710 9 O -0.407 6.407 10 N -0.291 5.291 11 C -0.091 4.091 12 C -0.141 4.141 13 C -0.161 4.161 14 C 0.098 3.902 15 C -0.492 4.492 16 H 0.094 0.906 17 C -0.146 4.146 18 N -0.439 5.439 19 Si 0.741 3.259 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.187 1.187 23 C -0.226 4.226 24 C -0.105 4.105 25 H 0.104 0.896 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.114 0.886 29 H 0.123 0.877 30 H 0.128 0.872 31 H 0.229 0.771 32 H 0.109 0.891 33 H 0.150 0.850 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.207 5.511 12.765 15.226 hybrid contribution 0.210 0.097 -0.610 0.652 sum -5.997 5.608 12.155 14.668 Atomic orbital electron populations 1.22197 0.92398 1.03663 1.03870 1.21193 0.98175 1.00681 0.92917 0.88209 1.22473 1.04821 1.00850 0.90936 1.21978 0.74568 0.98791 0.83756 1.92895 1.31650 1.97716 1.96106 1.92988 1.84851 1.86479 1.54473 1.20305 0.80867 0.85392 0.84394 1.90699 1.37979 1.25681 1.86378 1.42972 1.46523 1.34823 1.04745 1.17277 1.12294 0.92006 0.87543 1.20316 1.02507 0.96896 0.94348 1.21192 1.00964 0.96144 0.97843 1.17726 0.88693 0.92009 0.91785 1.19509 1.20548 1.01977 1.07128 0.90597 1.25881 0.96335 0.94576 0.97768 1.69762 1.27655 1.10066 1.36415 0.86188 0.78559 0.80447 0.80740 1.19517 1.20295 1.18711 1.20815 1.09294 0.98752 0.93721 1.20394 0.99984 0.92458 0.97662 0.89554 0.91981 0.91805 0.88631 0.87707 0.87215 0.77062 0.89096 0.85022 0.91135 0.88590 0.87512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 8.54 37.16 0.32 -1.20 16 2 C -0.11 -1.15 2.73 -91.77 -0.25 -1.40 16 3 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 4 C -0.15 -1.59 4.36 -26.73 -0.12 -1.71 16 5 C 0.26 2.26 5.25 37.16 0.20 2.46 16 6 F -0.20 -1.96 14.15 2.25 0.03 -1.93 16 7 F -0.21 -2.23 17.34 2.25 0.04 -2.19 16 8 C 0.50 8.15 6.99 -10.98 -0.08 8.07 16 9 O -0.53 -10.87 13.34 5.56 0.07 -10.80 16 10 N -0.65 -10.81 5.22 -9.74 -0.05 -10.86 16 11 C 0.00 0.02 6.31 -83.57 -0.53 -0.51 16 12 C -0.12 -2.70 9.90 -39.79 -0.39 -3.09 16 13 C -0.14 -3.60 8.61 -39.26 -0.34 -3.93 16 14 C 0.10 2.68 5.55 -106.80 -0.59 2.08 16 15 C -0.46 -12.25 9.02 -37.85 -0.34 -12.59 16 16 H 0.08 1.94 7.85 -52.48 -0.41 1.53 16 17 C 0.07 1.75 5.42 -17.34 -0.09 1.65 16 18 N -0.81 -20.97 10.60 55.55 0.59 -20.38 16 19 Si 0.92 18.91 29.56 -169.99 -5.03 13.89 16 20 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 21 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 23 C -0.21 -5.19 9.74 -39.26 -0.38 -5.58 16 24 C -0.09 -2.02 8.61 -39.79 -0.34 -2.36 16 25 H 0.09 0.70 5.43 -51.93 -0.28 0.42 16 26 H 0.06 0.51 7.46 -51.93 -0.39 0.12 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.10 1.17 7.95 -51.93 -0.41 0.75 16 30 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.40 5.10 8.11 -40.82 -0.33 4.77 16 32 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 33 H 0.13 3.46 6.13 -52.49 -0.32 3.14 16 34 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 35 H 0.10 2.31 8.06 -52.49 -0.42 1.88 16 36 H 0.11 2.50 6.22 -52.49 -0.33 2.18 16 LS Contribution 308.71 15.07 4.65 4.65 Total: -1.00 -30.37 308.71 -6.78 -37.15 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -4.14 Total: 8.57 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: -2.94 Total: -18.10 kcal Atomic # 7 Polarization: -31.78 SS G_CDS: 0.54 Total: -31.24 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.07 Total: -10.80 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.07 Total: -4.12 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.37 -6.78 -37.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411264259.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.021 kcal (2) G-P(sol) polarization free energy of solvation -30.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds