Wall clock time and date at job start Tue Mar 31 2020 05:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47817 * 2 1 4 4 C 1.53003 * 109.47127 * 239.99767 * 2 1 3 5 5 C 1.52996 * 109.47076 * 65.00066 * 4 2 1 6 6 F 1.39901 * 109.46731 * 65.00143 * 5 4 2 7 7 F 1.39902 * 109.46952 * 184.99540 * 5 4 2 8 8 C 1.50710 * 109.46853 * 120.00009 * 2 1 3 9 9 O 1.21283 * 119.99856 * 120.00295 * 8 2 1 10 10 N 1.34775 * 119.99667 * 300.27193 * 8 2 1 11 11 C 1.39931 * 119.99681 * 174.61399 * 10 8 2 12 12 C 1.39289 * 119.95022 * 325.55239 * 11 10 8 13 13 C 1.38492 * 120.43030 * 179.76618 * 12 11 10 14 14 C 1.37678 * 120.32177 * 0.50849 * 13 12 11 15 15 C 1.40742 * 119.88400 * 359.74813 * 14 13 12 16 16 C 1.41413 * 120.21075 * 180.02562 * 15 14 13 17 17 H 1.07996 * 120.00217 * 25.12774 * 16 15 14 18 18 C 1.39933 * 120.00042 * 205.13210 * 16 15 14 19 19 N 1.30838 * 120.00025 * 16.78538 * 18 16 15 20 20 Si 1.86793 * 119.99997 * 196.78802 * 18 16 15 21 21 H 1.48493 * 109.47463 * 59.99700 * 20 18 16 22 22 H 1.48500 * 109.46992 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47001 * 299.99676 * 20 18 16 24 24 C 1.38244 * 119.94687 * 145.82593 * 11 10 8 25 25 H 1.09006 * 109.46638 * 60.00233 * 1 2 3 26 26 H 1.08996 * 109.47395 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47241 * 300.00269 * 1 2 3 28 28 H 1.09000 * 109.46783 * 185.00873 * 4 2 1 29 29 H 1.08997 * 109.46996 * 304.99910 * 4 2 1 30 30 H 1.08992 * 109.47700 * 305.00128 * 5 4 2 31 31 H 0.97003 * 120.00412 * 354.61696 * 10 8 2 32 32 H 1.08001 * 119.78717 * 0.02562 * 12 11 10 33 33 H 1.07996 * 119.83746 * 180.23438 * 13 12 11 34 34 H 1.08001 * 120.06356 * 179.76777 * 14 13 12 35 35 H 0.97000 * 120.00152 * 180.02562 * 19 18 16 36 36 H 1.07996 * 120.16235 * 359.95986 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6353 0.0688 -2.4953 6 9 2.2842 1.3082 -2.4927 7 9 2.0012 -0.6467 -3.6404 8 6 2.0323 -0.7105 1.2306 9 8 2.7296 -1.6965 1.1193 10 7 1.7021 -0.2532 2.4546 11 6 2.0730 -0.9749 3.5946 12 6 2.1041 -2.3669 3.5568 13 6 2.4743 -3.0910 4.6778 14 6 2.8061 -2.4423 5.8460 15 6 2.7741 -1.0363 5.9007 16 6 3.1140 -0.3628 7.0968 17 1 3.7644 -0.8366 7.8172 18 6 2.6076 0.9174 7.3471 19 7 1.5829 1.3606 6.6648 20 14 3.3946 1.9938 8.6552 21 1 4.8187 2.2327 8.3088 22 1 2.6772 3.2921 8.7254 23 1 3.3132 1.3121 9.9721 24 6 2.4027 -0.3053 4.7583 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 3.1263 -0.7996 -1.2054 29 1 1.6054 -1.7198 -1.2951 30 1 0.5564 0.2236 -2.4929 31 1 1.2073 0.5762 2.5454 32 1 1.8417 -2.8849 2.6461 33 1 2.4987 -4.1699 4.6367 34 1 3.0906 -3.0112 6.7188 35 1 1.2321 2.2482 6.8381 36 1 2.3753 0.7738 4.7898 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412403093.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:08 Heat of formation + Delta-G solvation = -137.725840 kcal Electronic energy + Delta-G solvation = -21633.284152 eV Core-core repulsion = 17945.005429 eV Total energy + Delta-G solvation = -3688.278722 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.10783 -47.11276 -39.97184 -37.41870 -35.12431 -34.33882 -33.30115 -29.64289 -29.38223 -28.05665 -25.41432 -25.16249 -22.63930 -21.27416 -20.53817 -19.43316 -17.86120 -17.65994 -17.45730 -16.84990 -16.16329 -15.52164 -15.29150 -14.94753 -14.64124 -14.12416 -14.04259 -13.68923 -13.47133 -13.19781 -13.01677 -12.72306 -12.66614 -12.39711 -12.35164 -11.68646 -11.46094 -11.33237 -11.28308 -11.14150 -10.95398 -10.74571 -10.66511 -10.08123 -9.76714 -9.47592 -9.21503 -8.96925 -7.41651 -7.05602 -6.73014 -4.40470 2.50343 2.83398 3.04023 3.07531 3.16499 3.29370 3.37861 3.77554 3.90870 4.12803 4.22824 4.41677 4.60556 4.78375 4.83530 4.93179 5.24031 5.44234 5.51410 5.59618 5.65168 5.88416 5.94344 6.24255 6.59104 6.65531 6.85253 7.01827 7.03153 7.21949 7.57432 7.64470 7.89068 7.99393 8.10488 8.28791 8.51255 8.69822 8.85625 8.92235 10.15711 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.024926 B = 0.003695 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.036016 B = 7575.786497 C = 8288.311601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 H 0.105 0.895 4 C -0.152 4.152 5 C 0.260 3.740 6 F -0.206 7.206 7 F -0.207 7.207 8 C 0.512 3.488 9 O -0.525 6.525 10 N -0.661 5.661 11 C 0.144 3.856 12 C -0.227 4.227 13 C -0.086 4.086 14 C -0.228 4.228 15 C 0.121 3.879 16 C -0.464 4.464 17 H 0.078 0.922 18 C 0.077 3.923 19 N -0.800 5.800 20 Si 0.908 3.092 21 H -0.264 1.264 22 H -0.279 1.279 23 H -0.266 1.266 24 C -0.182 4.182 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.402 0.598 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.279 0.721 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.402 2.334 -12.579 13.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.134 4.134 3 H 0.123 0.877 4 C -0.190 4.190 5 C 0.206 3.794 6 F -0.188 7.188 7 F -0.188 7.188 8 C 0.298 3.702 9 O -0.400 6.400 10 N -0.304 5.304 11 C 0.052 3.948 12 C -0.248 4.248 13 C -0.105 4.105 14 C -0.248 4.248 15 C 0.118 3.882 16 C -0.494 4.494 17 H 0.096 0.904 18 C -0.140 4.140 19 N -0.426 5.426 20 Si 0.733 3.267 21 H -0.189 1.189 22 H -0.204 1.204 23 H -0.190 1.190 24 C -0.203 4.203 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.116 0.884 29 H 0.121 0.879 30 H 0.129 0.871 31 H 0.237 0.763 32 H 0.118 0.882 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.064 1.846 -12.732 13.491 hybrid contribution 0.094 1.061 0.601 1.223 sum -3.970 2.907 -12.130 13.090 Atomic orbital electron populations 1.21909 0.92491 1.03397 1.03077 1.21231 0.97825 1.01423 0.92882 0.87679 1.22454 1.05227 1.00333 0.91004 1.22048 0.96823 0.76794 0.83736 1.92986 1.84461 1.44572 1.96765 1.92984 1.93816 1.78656 1.53388 1.20299 0.80425 0.85123 0.84345 1.90718 1.36629 1.26233 1.86466 1.43463 1.55884 1.26178 1.04915 1.17605 1.00824 0.90826 0.85528 1.20274 1.14049 0.91870 0.98634 1.20418 0.99513 0.97276 0.93263 1.21046 1.12138 0.94544 0.97051 1.17359 0.88196 0.90623 0.92043 1.19519 1.26685 0.99592 1.03588 0.90375 1.25871 0.93264 0.98028 0.96807 1.69804 1.17570 1.18109 1.37074 0.86371 0.80379 0.78850 0.81138 1.18864 1.20386 1.19016 1.21078 1.08259 0.99748 0.91216 0.91610 0.91391 0.91022 0.88375 0.87921 0.87077 0.76291 0.88187 0.89033 0.88842 0.90975 0.85967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.85 37.16 0.33 -0.98 16 2 C -0.11 -1.26 2.69 -91.77 -0.25 -1.50 16 3 H 0.11 1.06 7.81 -51.93 -0.41 0.65 16 4 C -0.15 -1.64 4.25 -26.73 -0.11 -1.76 16 5 C 0.26 2.40 5.16 37.16 0.19 2.60 16 6 F -0.21 -2.29 16.93 2.25 0.04 -2.25 16 7 F -0.21 -2.31 17.34 2.25 0.04 -2.27 16 8 C 0.51 8.56 6.89 -10.98 -0.08 8.48 16 9 O -0.52 -10.80 13.66 5.55 0.08 -10.73 16 10 N -0.66 -11.91 5.18 -9.91 -0.05 -11.97 16 11 C 0.14 3.30 6.25 -83.77 -0.52 2.77 16 12 C -0.23 -5.33 8.66 -39.10 -0.34 -5.67 16 13 C -0.09 -1.99 10.02 -39.69 -0.40 -2.39 16 14 C -0.23 -5.63 9.79 -38.84 -0.38 -6.01 16 15 C 0.12 3.18 5.57 -106.85 -0.59 2.59 16 16 C -0.46 -12.12 9.06 -37.74 -0.34 -12.46 16 17 H 0.08 1.97 7.90 -52.49 -0.41 1.55 16 18 C 0.08 1.89 5.16 -17.34 -0.09 1.80 16 19 N -0.80 -19.77 10.94 55.55 0.61 -19.16 16 20 Si 0.91 18.29 29.59 -169.99 -5.03 13.26 16 21 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 22 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 23 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 24 C -0.18 -4.56 8.60 -38.68 -0.33 -4.89 16 25 H 0.07 0.40 6.46 -51.93 -0.34 0.06 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.61 7.68 -51.93 -0.40 0.22 16 28 H 0.10 1.23 7.95 -51.93 -0.41 0.82 16 29 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.11 0.68 6.34 -51.93 -0.33 0.35 16 31 H 0.40 6.07 8.39 -40.82 -0.34 5.73 16 32 H 0.10 2.30 6.48 -52.49 -0.34 1.96 16 33 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 34 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 35 H 0.28 6.29 8.30 -40.82 -0.34 5.95 16 36 H 0.12 3.10 6.17 -52.49 -0.32 2.78 16 LS Contribution 311.78 15.07 4.70 4.70 Total: -1.00 -29.92 311.78 -6.66 -36.59 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -4.13 Total: 9.25 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -2.91 Total: -17.42 kcal Atomic # 7 Polarization: -31.68 SS G_CDS: 0.56 Total: -31.12 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.08 Total: -10.73 kcal Atomic # 9 Polarization: -4.60 SS G_CDS: 0.08 Total: -4.52 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.92 -6.66 -36.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412403093.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.138 kcal (2) G-P(sol) polarization free energy of solvation -29.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds