Wall clock time and date at job start Tue Mar 31 2020 05:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46883 * 2 1 4 4 C 1.52997 * 109.47555 * 120.00469 * 2 1 3 5 5 C 1.53006 * 109.46939 * 294.99789 * 4 2 1 6 6 F 1.39898 * 109.46665 * 174.99538 * 5 4 2 7 7 F 1.39892 * 109.47050 * 294.99921 * 5 4 2 8 8 C 1.50703 * 109.46868 * 240.00476 * 2 1 3 9 9 O 1.21284 * 120.00246 * 239.99505 * 8 2 1 10 10 N 1.34781 * 120.00208 * 59.99782 * 8 2 1 11 11 C 1.39928 * 120.00078 * 184.03958 * 10 8 2 12 12 C 1.39295 * 119.94792 * 144.53779 * 11 10 8 13 13 C 1.38486 * 120.42793 * 179.72337 * 12 11 10 14 14 C 1.37683 * 120.32373 * 0.55015 * 13 12 11 15 15 C 1.40735 * 119.88469 * 359.72753 * 14 13 12 16 16 C 1.41410 * 120.21311 * 180.02562 * 15 14 13 17 17 H 1.07990 * 120.00373 * 214.72486 * 16 15 14 18 18 C 1.39935 * 119.99263 * 34.72884 * 16 15 14 19 19 N 1.30829 * 120.00430 * 355.57041 * 18 16 15 20 20 Si 1.86808 * 119.99467 * 175.56868 * 18 16 15 21 21 H 1.48499 * 109.46744 * 90.00064 * 20 18 16 22 22 H 1.48498 * 109.46689 * 209.99683 * 20 18 16 23 23 H 1.48496 * 109.47308 * 329.99892 * 20 18 16 24 24 C 1.38240 * 119.95064 * 324.81111 * 11 10 8 25 25 H 1.08995 * 109.47666 * 59.99855 * 1 2 3 26 26 H 1.09000 * 109.46883 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47001 * 299.99253 * 1 2 3 28 28 H 1.08999 * 109.47084 * 54.99571 * 4 2 1 29 29 H 1.09002 * 109.47159 * 174.99906 * 4 2 1 30 30 H 1.09000 * 109.46578 * 54.99984 * 5 4 2 31 31 H 0.97003 * 119.99590 * 4.31854 * 10 8 2 32 32 H 1.08000 * 119.78270 * 359.97438 * 12 11 10 33 33 H 1.08006 * 119.83678 * 180.27900 * 13 12 11 34 34 H 1.07994 * 120.05792 * 179.74800 * 14 13 12 35 35 H 0.97002 * 120.00043 * 180.02562 * 19 18 16 36 36 H 1.08004 * 120.16175 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6354 0.0688 2.4953 6 9 2.0012 -0.6468 3.6403 7 9 2.2842 1.3082 2.4927 8 6 2.0322 -0.7103 -1.2306 9 8 2.7296 -1.6964 -1.1194 10 7 1.7066 -0.2498 -2.4547 11 6 2.1017 -0.9564 -3.5960 12 6 1.2673 -0.9998 -4.7105 13 6 1.6509 -1.6914 -5.8474 14 6 2.8575 -2.3536 -5.8841 15 6 3.7084 -2.3235 -4.7636 16 6 4.9493 -3.0008 -4.7940 17 1 5.3334 -3.4648 -3.8976 18 6 5.6797 -3.0696 -5.9856 19 7 5.1757 -2.5836 -7.0908 20 14 7.3744 -3.8556 -5.9983 21 1 7.2447 -5.3069 -6.2844 22 1 8.2084 -3.2167 -7.0477 23 1 8.0170 -3.6678 -4.6728 24 6 3.3170 -1.6151 -3.6136 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.6054 -1.7198 1.2950 29 1 3.1264 -0.7995 1.2054 30 1 0.5564 0.2235 2.4928 31 1 1.2018 0.5736 -2.5446 32 1 0.3169 -0.4874 -4.6894 33 1 0.9985 -1.7150 -6.7078 34 1 3.1505 -2.8950 -6.7714 35 1 5.6819 -2.6317 -7.9169 36 1 3.9629 -1.5855 -2.7485 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412403098.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:10 Heat of formation + Delta-G solvation = -134.310285 kcal Electronic energy + Delta-G solvation = -21605.658219 eV Core-core repulsion = 17917.527606 eV Total energy + Delta-G solvation = -3688.130613 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.11393 -47.11944 -40.01347 -37.40069 -35.14072 -34.48452 -32.99113 -29.80535 -29.39483 -27.89270 -25.36241 -25.22119 -22.68400 -21.07942 -20.64034 -19.46837 -17.98154 -17.70027 -17.43233 -16.88035 -15.88697 -15.49580 -15.29260 -15.07271 -14.59152 -14.13936 -14.05005 -13.73643 -13.48153 -13.10435 -12.99750 -12.86881 -12.69541 -12.43208 -12.11027 -11.69182 -11.48117 -11.35255 -11.18494 -11.08932 -10.99131 -10.91325 -10.41238 -10.20514 -9.67520 -9.40822 -9.13154 -8.87335 -7.39235 -6.93463 -6.56727 -4.37184 2.54959 2.83436 3.12060 3.14214 3.17620 3.24637 3.40274 3.75367 4.01295 4.10779 4.20481 4.40895 4.70889 4.76588 4.79165 4.89772 5.19926 5.38978 5.48784 5.56360 5.67070 5.88184 5.89528 6.21091 6.33918 6.71754 6.98771 7.02118 7.09782 7.32217 7.53160 7.71817 7.95216 8.12414 8.13479 8.26800 8.62393 8.71377 8.97435 8.98905 10.32812 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.021933 B = 0.003835 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.285996 B = 7300.007110 C = 8314.320523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 H 0.105 0.895 4 C -0.153 4.153 5 C 0.260 3.740 6 F -0.206 7.206 7 F -0.207 7.207 8 C 0.510 3.490 9 O -0.515 6.515 10 N -0.664 5.664 11 C 0.138 3.862 12 C -0.249 4.249 13 C -0.100 4.100 14 C -0.159 4.159 15 C 0.113 3.887 16 C -0.461 4.461 17 H 0.076 0.924 18 C 0.071 3.929 19 N -0.814 5.814 20 Si 0.914 3.086 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.263 1.263 24 C -0.199 4.199 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.398 0.602 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.129 0.871 35 H 0.277 0.723 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.910 6.626 11.827 16.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.132 4.132 3 H 0.123 0.877 4 C -0.192 4.192 5 C 0.206 3.794 6 F -0.188 7.188 7 F -0.188 7.188 8 C 0.295 3.705 9 O -0.390 6.390 10 N -0.308 5.308 11 C 0.046 3.954 12 C -0.270 4.270 13 C -0.119 4.119 14 C -0.179 4.179 15 C 0.110 3.890 16 C -0.492 4.492 17 H 0.094 0.906 18 C -0.144 4.144 19 N -0.441 5.441 20 Si 0.739 3.261 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.187 1.187 24 C -0.220 4.220 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.122 0.878 29 H 0.117 0.883 30 H 0.129 0.871 31 H 0.232 0.768 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.147 0.853 35 H 0.088 0.912 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.323 5.948 11.726 15.561 hybrid contribution 0.565 0.295 -0.124 0.649 sum -7.758 6.243 11.602 15.289 Atomic orbital electron populations 1.21904 0.92588 1.03418 1.02898 1.21222 0.97752 1.01332 0.92937 0.87702 1.22470 1.05378 1.00382 0.90934 1.22038 0.96753 0.76779 0.83784 1.92987 1.93808 1.78636 1.53351 1.92982 1.84478 1.44583 1.96770 1.20317 0.80901 0.84957 0.84276 1.90762 1.36028 1.25942 1.86257 1.43385 1.55928 1.26484 1.04981 1.17471 0.94341 0.98062 0.85498 1.20126 0.99546 1.11804 0.95513 1.20552 0.97025 0.98523 0.95825 1.21650 0.92581 1.02663 1.00983 1.17574 0.92003 0.89233 0.90218 1.19529 1.02982 1.30766 0.95920 0.90585 1.25853 1.00151 0.93567 0.94804 1.69757 1.37610 1.36738 0.99993 0.86210 0.81373 0.79549 0.78939 1.19501 1.20317 1.18715 1.21271 0.95709 1.04264 1.00730 0.91237 0.91342 0.91615 0.87837 0.88254 0.87128 0.76775 0.89250 0.88943 0.85286 0.91222 0.87001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 8.85 37.16 0.33 -0.85 16 2 C -0.11 -1.19 2.68 -91.77 -0.25 -1.43 16 3 H 0.10 0.98 7.82 -51.93 -0.41 0.57 16 4 C -0.15 -1.66 4.25 -26.73 -0.11 -1.77 16 5 C 0.26 2.37 5.16 37.16 0.19 2.56 16 6 F -0.21 -2.31 17.34 2.25 0.04 -2.27 16 7 F -0.21 -2.24 16.93 2.25 0.04 -2.21 16 8 C 0.51 8.36 6.99 -10.98 -0.08 8.29 16 9 O -0.52 -10.89 13.37 5.55 0.07 -10.81 16 10 N -0.66 -11.13 5.19 -9.91 -0.05 -11.18 16 11 C 0.14 3.04 6.29 -83.77 -0.53 2.51 16 12 C -0.25 -5.32 9.97 -39.10 -0.39 -5.71 16 13 C -0.10 -2.31 10.02 -39.69 -0.40 -2.70 16 14 C -0.16 -4.16 8.67 -38.84 -0.34 -4.49 16 15 C 0.11 3.09 5.55 -106.85 -0.59 2.50 16 16 C -0.46 -12.75 9.04 -37.74 -0.34 -13.09 16 17 H 0.08 2.08 7.85 -52.49 -0.41 1.66 16 18 C 0.07 1.83 5.42 -17.34 -0.09 1.74 16 19 N -0.81 -21.42 10.60 55.55 0.59 -20.83 16 20 Si 0.91 19.52 29.56 -169.99 -5.03 14.49 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 23 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 24 C -0.20 -5.10 8.43 -38.68 -0.33 -5.42 16 25 H 0.07 0.50 7.67 -51.93 -0.40 0.10 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.35 6.46 -51.93 -0.34 0.01 16 28 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.10 1.27 7.96 -51.93 -0.41 0.85 16 30 H 0.11 0.64 6.34 -51.93 -0.33 0.31 16 31 H 0.40 5.06 8.38 -40.82 -0.34 4.72 16 32 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 34 H 0.13 3.50 6.13 -52.49 -0.32 3.18 16 35 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 36 H 0.11 2.97 6.24 -52.48 -0.33 2.64 16 LS Contribution 311.18 15.07 4.69 4.69 Total: -1.00 -31.27 311.18 -6.68 -37.94 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -4.11 Total: 8.06 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: -2.92 Total: -17.88 kcal Atomic # 7 Polarization: -32.55 SS G_CDS: 0.54 Total: -32.01 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.07 Total: -10.81 kcal Atomic # 9 Polarization: -4.56 SS G_CDS: 0.08 Total: -4.48 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.03 Total: 14.49 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.27 -6.68 -37.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412403098.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.366 kcal (2) G-P(sol) polarization free energy of solvation -31.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds