Wall clock time and date at job start Tue Mar 31 2020 06:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00238 * 2 1 4 4 H 1.48504 * 109.47064 * 240.00322 * 3 2 1 5 5 H 1.48497 * 109.47073 * 359.97438 * 3 2 1 6 6 H 1.48487 * 109.47198 * 120.00215 * 3 2 1 7 7 C 1.37878 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00047 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99943 * 359.97438 * 7 2 1 10 10 S 1.81394 * 109.47202 * 180.02562 * 9 7 2 11 11 C 1.81401 * 103.00107 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.47196 * 180.02562 * 11 10 9 13 13 O 1.21277 * 119.99896 * 5.24363 * 12 11 10 14 14 N 1.34773 * 120.00003 * 185.24872 * 12 11 10 15 15 C 1.46506 * 120.00259 * 186.25457 * 14 12 11 16 16 C 1.53003 * 117.49530 * 16.66328 * 15 14 12 17 17 C 1.53001 * 117.49313 * 308.00731 * 15 14 12 18 18 C 1.46504 * 120.00033 * 6.25277 * 14 12 11 19 19 C 1.54260 * 110.03325 * 59.90057 * 18 14 12 20 20 C 1.54963 * 104.16015 * 217.13696 * 19 18 14 21 21 C 1.54883 * 102.77651 * 37.88904 * 20 19 18 22 22 C 1.53872 * 110.03128 * 302.68016 * 18 14 12 23 23 H 0.97006 * 119.99274 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46869 * 60.00051 * 9 7 2 25 25 H 1.09006 * 109.47272 * 300.00463 * 9 7 2 26 26 H 1.08999 * 109.47164 * 300.00338 * 11 10 9 27 27 H 1.08999 * 109.47174 * 60.00082 * 11 10 9 28 28 H 1.08993 * 115.55009 * 162.33485 * 15 14 12 29 29 H 1.09005 * 117.49863 * 0.02562 * 16 15 14 30 30 H 1.08995 * 117.49702 * 145.02037 * 16 15 14 31 31 H 1.09006 * 117.49434 * 214.97484 * 17 15 14 32 32 H 1.08997 * 117.50151 * 359.97438 * 17 15 14 33 33 H 1.09001 * 110.01587 * 181.29076 * 18 14 12 34 34 H 1.08996 * 110.48611 * 335.78537 * 19 18 14 35 35 H 1.09001 * 110.48965 * 98.42280 * 19 18 14 36 36 H 1.09000 * 110.72273 * 279.57181 * 20 19 18 37 37 H 1.09005 * 110.92199 * 156.29738 * 20 19 18 38 38 H 1.09005 * 110.48709 * 203.40392 * 21 20 19 39 39 H 1.08996 * 110.60187 * 80.81698 * 21 20 19 40 40 H 1.08996 * 110.03757 * 238.57067 * 22 18 14 41 41 H 1.08999 * 110.03146 * 359.95814 * 22 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 16 2.4297 -3.8779 -0.0005 11 6 1.3514 -5.3367 0.0003 12 6 2.1953 -6.5852 0.0010 13 8 3.4014 -6.5018 0.0969 14 7 1.6097 -7.7944 -0.1051 15 6 2.4129 -9.0119 0.0328 16 6 3.7966 -8.8768 0.6716 17 6 3.6690 -9.1313 -0.8324 18 6 0.1700 -7.8914 -0.3584 19 6 -0.1800 -7.1980 -1.6912 20 6 -1.5501 -6.5264 -1.4208 21 6 -1.4067 -6.0317 0.0399 22 6 -0.6098 -7.1507 0.7419 23 1 -0.4849 0.8402 -0.0004 24 1 0.6240 -2.5566 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 0.7225 -5.3231 0.8904 27 1 0.7219 -5.3237 -0.8895 28 1 1.8522 -9.9245 0.2349 29 1 4.1092 -7.8821 0.9895 30 1 4.1464 -9.7007 1.2935 31 1 3.9350 -10.1227 -1.1993 32 1 3.8977 -8.3043 -1.5046 33 1 -0.1334 -8.9379 -0.3911 34 1 0.5703 -6.4472 -1.9391 35 1 -0.2655 -7.9321 -2.4923 36 1 -2.3588 -7.2524 -1.5051 37 1 -1.7133 -5.6883 -2.0983 38 1 -2.3874 -5.9148 0.5011 39 1 -0.8556 -5.0919 0.0741 40 1 -1.2923 -7.8373 1.2427 41 1 0.0828 -6.7196 1.4647 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413016133.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:05 Heat of formation + Delta-G solvation = 7.499785 kcal Electronic energy + Delta-G solvation = -20833.151570 eV Core-core repulsion = 17840.843784 eV Total energy + Delta-G solvation = -2992.307786 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.83801 -38.04698 -36.31959 -33.11970 -33.10783 -29.82795 -28.82437 -28.44188 -27.35018 -23.35184 -22.76995 -22.31624 -20.93461 -20.87987 -18.94722 -17.27701 -16.41194 -16.35690 -15.62249 -15.25472 -15.10518 -14.78015 -14.51819 -14.28336 -13.96314 -13.20120 -13.03042 -12.70014 -12.43471 -12.24434 -12.18966 -11.84911 -11.73224 -11.24168 -11.22534 -11.14688 -11.01530 -10.89610 -10.83297 -10.69700 -10.53199 -10.33619 -9.92256 -9.58407 -9.25441 -8.69218 -8.58567 -8.38277 -6.59944 -6.17559 -4.20945 2.34637 2.68987 3.03021 3.30792 3.33207 3.38539 3.85809 3.92020 4.33596 4.38033 4.44958 4.54032 4.77640 4.87484 5.02365 5.07781 5.19843 5.19999 5.23484 5.31555 5.37839 5.45521 5.47112 5.53400 5.54590 5.73857 5.81961 5.84119 5.93619 6.03123 6.08987 6.14216 6.27490 6.40196 6.77038 7.09972 7.10613 7.35630 7.77766 8.04112 8.32101 8.80822 9.41915 10.93860 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.020987 B = 0.004682 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.857169 B = 5978.353869 C = 6996.099881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.066 3.934 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.510 4.510 8 H 0.067 0.933 9 C 0.078 3.922 10 S -0.246 6.246 11 C -0.148 4.148 12 C 0.536 3.464 13 O -0.506 6.506 14 N -0.586 5.586 15 C 0.071 3.929 16 C -0.192 4.192 17 C -0.187 4.187 18 C 0.144 3.856 19 C -0.147 4.147 20 C -0.122 4.122 21 C -0.140 4.140 22 C -0.145 4.145 23 H 0.265 0.735 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.111 0.889 27 H 0.113 0.887 28 H 0.125 0.875 29 H 0.137 0.863 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.983 -19.340 -1.000 19.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.138 4.138 3 Si 0.733 3.267 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.549 4.549 8 H 0.085 0.915 9 C -0.069 4.069 10 S -0.021 6.021 11 C -0.297 4.297 12 C 0.325 3.675 13 O -0.381 6.381 14 N -0.318 5.318 15 C -0.034 4.034 16 C -0.229 4.229 17 C -0.226 4.226 18 C 0.040 3.960 19 C -0.186 4.186 20 C -0.160 4.160 21 C -0.177 4.177 22 C -0.184 4.184 23 H 0.075 0.925 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.129 0.871 27 H 0.131 0.869 28 H 0.143 0.857 29 H 0.154 0.846 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.401 -19.156 -0.938 19.329 hybrid contribution -1.181 0.707 -0.023 1.377 sum -3.582 -18.449 -0.961 18.818 Atomic orbital electron populations 1.69946 1.06105 1.27351 1.49811 1.24942 0.94969 0.99197 0.94653 0.86418 0.79415 0.81855 0.79024 1.19895 1.21091 1.19887 1.20614 0.93491 0.88665 1.52147 0.91497 1.21122 0.94367 0.91563 0.99889 1.87203 1.18009 0.98871 1.97992 1.24422 1.02383 0.95944 1.06993 1.20009 0.88190 0.83811 0.75520 1.90566 1.14175 1.85910 1.47487 1.47486 1.08027 1.04404 1.71922 1.21657 0.87161 0.88213 1.06335 1.23815 0.97789 1.05767 0.95554 1.23252 1.01854 1.02580 0.94897 1.21810 0.78893 1.00717 0.94613 1.23061 0.98348 1.00413 0.96732 1.22468 0.96371 1.00326 0.96860 1.22708 1.00723 0.98895 0.95398 1.22788 0.99275 0.98274 0.98025 0.92524 0.94760 0.94756 0.87129 0.86877 0.85723 0.84553 0.89454 0.88958 0.88384 0.88761 0.90054 0.90862 0.91205 0.90761 0.91108 0.90066 0.90782 0.90470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.82 13.29 55.43 0.74 -25.08 16 2 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 3 Si 0.91 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.51 -14.53 9.13 -34.44 -0.31 -14.85 16 8 H 0.07 1.93 7.71 -52.49 -0.40 1.52 16 9 C 0.08 2.02 5.70 36.01 0.21 2.22 16 10 S -0.25 -5.66 20.80 -107.50 -2.24 -7.89 16 11 C -0.15 -2.56 3.45 36.01 0.12 -2.43 16 12 C 0.54 8.96 6.49 -10.99 -0.07 8.89 16 13 O -0.51 -10.00 11.61 5.56 0.06 -9.93 16 14 N -0.59 -7.50 2.80 -157.33 -0.44 -7.94 16 15 C 0.07 0.81 6.58 -67.93 -0.45 0.36 16 16 C -0.19 -2.44 9.63 -26.69 -0.26 -2.69 16 17 C -0.19 -2.24 9.87 -26.69 -0.26 -2.51 16 18 C 0.14 1.44 3.37 -66.81 -0.23 1.22 16 19 C -0.15 -1.52 5.85 -25.04 -0.15 -1.67 16 20 C -0.12 -1.19 6.75 -24.70 -0.17 -1.36 16 21 C -0.14 -1.52 5.99 -25.07 -0.15 -1.67 16 22 C -0.15 -1.47 5.64 -25.61 -0.14 -1.62 16 23 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 24 H 0.03 0.91 8.14 -51.92 -0.42 0.49 16 25 H 0.03 0.91 8.14 -51.92 -0.42 0.49 16 26 H 0.11 1.80 4.61 -51.92 -0.24 1.56 16 27 H 0.11 1.82 3.69 -51.92 -0.19 1.63 16 28 H 0.13 1.05 8.01 -51.93 -0.42 0.63 16 29 H 0.14 2.22 5.25 -52.03 -0.27 1.95 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.10 1.43 7.57 -51.93 -0.39 1.04 16 33 H 0.09 0.73 7.86 -51.93 -0.41 0.32 16 34 H 0.08 1.04 5.23 -51.93 -0.27 0.77 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 1.10 5.27 -51.93 -0.27 0.83 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.92 5.62 -51.93 -0.29 0.63 16 LS Contribution 325.69 15.07 4.91 4.91 Total: -1.00 -31.15 325.69 -10.05 -41.19 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -6.10 Total: 2.56 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -1.95 Total: -14.35 kcal Atomic # 7 Polarization: -33.31 SS G_CDS: 0.30 Total: -33.02 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.06 Total: -9.93 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -5.66 SS G_CDS: -2.24 Total: -7.89 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.15 -10.05 -41.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413016133.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.694 kcal (2) G-P(sol) polarization free energy of solvation -31.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds