Wall clock time and date at job start Tue Mar 31 2020 06:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00187 * 2 1 4 4 H 1.48498 * 109.47027 * 239.99980 * 3 2 1 5 5 H 1.48504 * 109.46813 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47313 * 119.99797 * 3 2 1 7 7 C 1.37883 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99626 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99925 * 359.72796 * 7 2 1 10 10 C 1.52996 * 109.47282 * 180.27553 * 9 7 2 11 11 C 1.50698 * 109.47282 * 179.97438 * 10 9 7 12 12 O 1.21275 * 120.00173 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99631 * 180.02562 * 11 10 9 14 14 C 1.46375 * 119.64940 * 354.64398 * 13 11 10 15 15 C 1.53246 * 109.48495 * 245.08616 * 14 13 11 16 16 S 1.81733 * 108.79860 * 302.34416 * 15 14 13 17 17 C 1.81738 * 102.30933 * 54.54227 * 16 15 14 18 18 C 1.46378 * 119.64206 * 174.37099 * 13 11 10 19 19 H 1.09003 * 109.46985 * 234.91276 * 18 13 11 20 20 C 1.52995 * 109.47229 * 354.90920 * 18 13 11 21 21 C 1.53784 * 113.61180 * 284.86683 * 20 18 13 22 22 C 1.53960 * 87.02152 * 220.04394 * 21 20 18 23 23 C 1.53780 * 113.61826 * 187.25983 * 20 18 13 24 24 H 0.96999 * 120.00115 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47296 * 300.27401 * 9 7 2 26 26 H 1.09003 * 109.47499 * 60.27469 * 9 7 2 27 27 H 1.09004 * 109.46831 * 300.00133 * 10 9 7 28 28 H 1.09003 * 109.46922 * 59.99562 * 10 9 7 29 29 H 1.08991 * 109.46790 * 5.09363 * 14 13 11 30 30 H 1.09001 * 109.46794 * 125.08723 * 14 13 11 31 31 H 1.09002 * 109.58149 * 62.14351 * 15 14 13 32 32 H 1.08998 * 109.57746 * 182.55119 * 15 14 13 33 33 H 1.08997 * 109.58421 * 65.24999 * 17 16 15 34 34 H 1.09001 * 109.58761 * 185.53052 * 17 16 15 35 35 H 1.09001 * 112.85068 * 56.05723 * 20 18 13 36 36 H 1.09001 * 113.61841 * 334.56733 * 21 20 18 37 37 H 1.09004 * 113.61553 * 105.46872 * 21 20 18 38 38 H 1.08994 * 113.54004 * 270.81212 * 22 21 20 39 39 H 1.09000 * 113.66618 * 139.93031 * 22 21 20 40 40 H 1.08997 * 113.61550 * 254.52812 * 23 20 18 41 41 H 1.09000 * 113.61440 * 25.34962 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0073 10 6 2.2452 -3.6621 0.0134 11 6 1.4917 -4.9671 0.0209 12 8 0.2789 -4.9671 0.0217 13 7 2.1656 -6.1343 0.0276 14 6 3.6246 -6.1288 -0.0910 15 6 4.0331 -6.8032 -1.4050 16 16 3.3630 -8.4923 -1.4294 17 6 1.5922 -8.2109 -1.1329 18 6 1.4312 -7.3936 0.1596 19 1 1.8288 -7.9595 1.0021 20 6 -0.0506 -7.0972 0.3983 21 6 -0.3595 -6.6102 1.8239 22 6 -1.6249 -7.4851 1.7623 23 6 -0.8839 -8.3473 0.7267 24 1 -0.4850 0.8400 -0.0004 25 1 0.6243 -2.5523 0.8976 26 1 0.6244 -2.5616 -0.8824 27 1 2.8719 -3.6090 -0.8768 28 1 2.8719 -3.5997 0.9031 29 1 3.9858 -5.1005 -0.0828 30 1 4.0593 -6.6732 0.7473 31 1 3.6310 -6.2383 -2.2460 32 1 5.1203 -6.8404 -1.4738 33 1 1.1643 -7.6609 -1.9710 34 1 1.0828 -9.1686 -1.0262 35 1 -0.4883 -6.4730 -0.3808 36 1 0.3660 -6.9433 2.5660 37 1 -0.5687 -5.5421 1.8847 38 1 -2.4936 -6.9662 1.3572 39 1 -1.8400 -8.0095 2.6934 40 1 -1.5157 -8.6796 -0.0970 41 1 -0.3017 -9.1568 1.1669 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416097396.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:10 Heat of formation + Delta-G solvation = -4.150743 kcal Electronic energy + Delta-G solvation = -21139.804117 eV Core-core repulsion = 18146.991127 eV Total energy + Delta-G solvation = -2992.812990 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.58861 -37.85377 -36.13535 -33.60384 -32.21707 -30.90665 -29.87293 -26.28280 -25.33800 -25.17314 -23.42070 -22.68044 -20.93438 -19.52507 -18.79268 -17.03812 -16.37758 -16.03270 -15.81058 -15.21498 -15.02543 -14.58199 -14.46394 -14.33588 -13.70355 -13.51881 -13.16398 -12.78462 -12.49637 -12.35746 -12.18386 -12.01312 -11.83223 -11.62040 -11.34180 -11.11820 -10.94930 -10.65206 -10.40074 -10.33301 -10.08483 -9.96350 -9.73679 -9.57841 -9.15880 -8.69874 -8.41587 -8.35416 -7.78143 -5.99818 -4.04373 1.59699 2.34632 3.08444 3.09781 3.31664 3.36895 3.38246 4.43191 4.51895 4.64650 4.77717 4.87775 4.89794 4.99890 5.02470 5.11509 5.27724 5.34237 5.35351 5.40819 5.49907 5.56812 5.66963 5.75741 5.82334 5.87726 6.01256 6.10039 6.12528 6.23430 6.45928 6.52326 6.66876 6.82182 6.94710 7.62581 7.69385 7.80794 8.02128 8.34416 8.68509 9.03505 9.59454 11.10964 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.018518 B = 0.004862 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.682810 B = 5757.351867 C = 7000.867515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.529 4.529 8 H 0.054 0.946 9 C 0.040 3.960 10 C -0.132 4.132 11 C 0.512 3.488 12 O -0.511 6.511 13 N -0.626 5.626 14 C 0.108 3.892 15 C -0.099 4.099 16 S -0.272 6.272 17 C -0.089 4.089 18 C 0.159 3.841 19 H 0.078 0.922 20 C -0.096 4.096 21 C -0.127 4.127 22 C -0.138 4.138 23 C -0.150 4.150 24 H 0.262 0.738 25 H 0.023 0.977 26 H 0.022 0.978 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.105 0.895 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.114 0.886 33 H 0.087 0.913 34 H 0.110 0.890 35 H 0.134 0.866 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.094 -17.702 0.234 18.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.072 0.928 9 C 0.002 3.998 10 C -0.172 4.172 11 C 0.303 3.697 12 O -0.386 6.386 13 N -0.362 5.362 14 C -0.017 4.017 15 C -0.248 4.248 16 S -0.044 6.044 17 C -0.239 4.239 18 C 0.054 3.946 19 H 0.096 0.904 20 C -0.116 4.116 21 C -0.165 4.165 22 C -0.176 4.176 23 C -0.188 4.188 24 H 0.071 0.929 25 H 0.042 0.958 26 H 0.041 0.959 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.123 0.877 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.133 0.867 33 H 0.105 0.895 34 H 0.129 0.871 35 H 0.151 0.849 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.844 -18.549 0.048 19.171 hybrid contribution 0.068 1.909 0.104 1.913 sum 4.912 -16.640 0.152 17.351 Atomic orbital electron populations 1.69979 1.06046 1.26731 1.50019 1.25007 0.94807 0.99182 0.95233 0.86668 0.79582 0.83228 0.78557 1.20255 1.21258 1.20239 1.21166 0.92842 0.91040 1.51649 0.92752 1.18879 0.93078 0.89287 0.98524 1.21946 1.00838 0.92235 1.02133 1.21577 0.88618 0.85339 0.74183 1.90600 1.14041 1.86260 1.47703 1.48169 1.06489 1.06208 1.75303 1.21751 0.80855 1.03154 0.95974 1.23886 1.04254 0.94924 1.01780 1.86741 1.08593 1.13689 1.95410 1.24000 0.93795 1.04443 1.01637 1.21430 0.93462 0.84587 0.95135 0.90420 1.23262 0.91661 0.95904 1.00754 1.23002 0.96636 1.01131 0.95697 1.22743 0.97775 0.98358 0.98678 1.23147 0.99339 0.97106 0.99230 0.92878 0.95823 0.95916 0.90489 0.90293 0.87699 0.90290 0.89267 0.86748 0.89466 0.87133 0.84885 0.91669 0.90000 0.90312 0.92232 0.91923 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.53 -14.61 9.11 -34.44 -0.31 -14.93 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 9 C 0.04 1.03 4.26 -27.89 -0.12 0.91 16 10 C -0.13 -2.53 3.95 -27.89 -0.11 -2.64 16 11 C 0.51 9.10 7.28 -10.98 -0.08 9.02 16 12 O -0.51 -10.48 9.78 5.56 0.05 -10.42 16 13 N -0.63 -8.64 2.78 -165.70 -0.46 -9.10 16 14 C 0.11 1.18 6.14 -3.98 -0.02 1.15 16 15 C -0.10 -1.00 6.67 37.28 0.25 -0.75 16 16 S -0.27 -3.08 22.29 -107.50 -2.40 -5.47 16 17 C -0.09 -1.02 5.82 37.55 0.22 -0.80 16 18 C 0.16 2.00 2.44 -67.60 -0.16 1.84 16 19 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 20 C -0.10 -1.33 1.96 -89.81 -0.18 -1.51 16 21 C -0.13 -1.86 6.64 -25.82 -0.17 -2.03 16 22 C -0.14 -1.73 8.09 -25.82 -0.21 -1.94 16 23 C -0.15 -1.71 7.10 -25.92 -0.18 -1.89 16 24 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 26 H 0.02 0.64 8.10 -51.93 -0.42 0.22 16 27 H 0.08 1.36 7.64 -51.93 -0.40 0.97 16 28 H 0.08 1.41 7.90 -51.93 -0.41 1.00 16 29 H 0.10 1.11 5.73 -51.93 -0.30 0.82 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.11 1.10 7.80 -51.93 -0.40 0.69 16 35 H 0.13 2.26 5.87 -53.00 -0.31 1.95 16 36 H 0.06 0.90 8.07 -51.93 -0.42 0.48 16 37 H 0.08 1.47 6.80 -51.93 -0.35 1.12 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 LS Contribution 329.13 15.07 4.96 4.96 Total: -1.00 -30.75 329.13 -10.08 -40.83 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -6.77 Total: 1.04 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -1.18 Total: -11.96 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.28 Total: -35.29 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.05 Total: -10.42 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -3.08 SS G_CDS: -2.40 Total: -5.47 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.75 -10.08 -40.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416097396.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.681 kcal (2) G-P(sol) polarization free energy of solvation -30.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds