Wall clock time and date at job start Tue Mar 31 2020 05:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46911 * 2 1 4 4 C 1.52996 * 109.47238 * 240.00372 * 2 1 3 5 5 C 1.50702 * 109.47159 * 64.99689 * 4 2 1 6 6 O 1.21283 * 120.00262 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99928 * 179.72352 * 5 4 2 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 4 9 9 C 1.50694 * 109.47550 * 180.02562 * 8 7 5 10 10 H 1.08008 * 119.99963 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00446 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99703 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00230 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46973 * 90.00368 * 13 11 9 15 15 H 1.48497 * 109.46950 * 210.00151 * 13 11 9 16 16 H 1.48504 * 109.47027 * 330.00190 * 13 11 9 17 17 C 1.50695 * 109.46934 * 119.99972 * 2 1 3 18 18 C 1.38231 * 119.98474 * 59.72944 * 17 2 1 19 19 C 1.38194 * 120.04568 * 179.76103 * 18 17 2 20 20 C 1.38491 * 120.02638 * 0.51158 * 19 18 17 21 21 F 1.35101 * 120.01314 * 179.76800 * 20 19 18 22 22 C 1.38397 * 119.97399 * 359.73936 * 20 19 18 23 23 C 1.38443 * 119.95148 * 0.02562 * 22 20 19 24 24 F 1.35102 * 120.01299 * 180.02562 * 23 22 20 25 25 H 1.08994 * 109.47016 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47260 * 299.99678 * 1 2 3 27 27 H 1.09001 * 109.47309 * 59.99648 * 1 2 3 28 28 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 29 29 H 1.08994 * 109.47405 * 184.99723 * 4 2 1 30 30 H 0.97000 * 120.00317 * 0.28382 * 7 5 4 31 31 H 1.08998 * 109.47134 * 300.00670 * 8 7 5 32 32 H 1.09002 * 109.46857 * 59.99862 * 8 7 5 33 33 H 0.97000 * 119.99614 * 179.97438 * 12 11 9 34 34 H 1.07991 * 119.97699 * 0.02562 * 18 17 2 35 35 H 1.08000 * 119.98700 * 180.25238 * 19 18 17 36 36 H 1.08003 * 120.02419 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.6413 0.0572 -2.4766 6 8 1.0116 1.0875 -2.3633 7 7 1.9897 -0.3885 -3.6999 8 6 1.6073 0.3712 -4.8927 9 6 2.1138 -0.3365 -6.1229 10 1 2.6651 -1.2602 -6.0260 11 6 1.8726 0.1945 -7.3722 12 7 1.2009 1.3190 -7.4903 13 14 2.4999 -0.6833 -8.8972 14 1 1.4694 -1.6386 -9.3776 15 1 2.7844 0.3138 -9.9603 16 1 3.7445 -1.4227 -8.5661 17 6 2.0323 -0.7104 1.2304 18 6 1.6935 -2.0321 1.4517 19 6 2.1575 -2.6863 2.5771 20 6 2.9537 -2.0150 3.4900 21 9 3.4033 -2.6534 4.5925 22 6 3.2892 -0.6901 3.2721 23 6 2.8279 -0.0372 2.1418 24 9 3.1551 1.2560 1.9276 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.6054 -1.7197 -1.2952 29 1 3.1263 -0.7993 -1.2057 30 1 2.4935 -1.2124 -3.7906 31 1 0.5212 0.4500 -4.9405 32 1 2.0421 1.3695 -4.8424 33 1 1.0315 1.6927 -8.3692 34 1 1.0694 -2.5552 0.7424 35 1 1.8955 -3.7202 2.7470 36 1 3.9105 -0.1660 3.9832 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427633616.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:04 Heat of formation + Delta-G solvation = -123.325809 kcal Electronic energy + Delta-G solvation = -21256.526088 eV Core-core repulsion = 17568.871798 eV Total energy + Delta-G solvation = -3687.654290 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.27692 -49.17122 -39.76353 -38.67487 -35.13003 -34.06876 -32.35137 -31.10240 -29.76188 -28.29943 -26.54303 -24.14257 -23.26945 -22.50130 -20.61042 -19.50679 -18.51508 -17.62012 -16.98217 -16.23440 -16.18958 -15.94501 -15.52929 -15.21730 -15.18071 -14.95918 -14.67679 -14.34732 -14.13974 -13.45314 -13.20787 -12.98820 -12.75753 -12.33421 -12.13149 -11.97993 -11.90712 -11.62022 -11.14683 -11.06553 -10.95910 -10.85739 -10.75027 -10.32258 -9.41361 -9.36006 -9.03553 -8.80925 -8.74716 -7.89167 -6.18303 -4.25296 0.66851 0.71515 3.06384 3.22857 3.29175 3.31518 3.35048 3.59269 3.99382 4.14864 4.28513 4.32093 4.52296 4.59813 4.83703 4.98638 5.12175 5.17981 5.31571 5.48623 5.57625 5.65107 5.65750 5.69882 5.73776 5.82422 5.91751 6.08678 6.33580 6.46722 6.55855 7.29155 7.42819 7.50256 7.64800 7.95666 8.61112 8.76277 9.08833 9.41542 10.91898 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.032160 B = 0.002984 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.426715 B = 9382.342520 C = 9700.706348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.037 4.037 3 H 0.094 0.906 4 C -0.134 4.134 5 C 0.498 3.502 6 O -0.553 6.553 7 N -0.713 5.713 8 C 0.249 3.751 9 C -0.544 4.544 10 H 0.063 0.937 11 C 0.063 3.937 12 N -0.885 5.885 13 Si 0.904 3.096 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.273 1.273 17 C -0.113 4.113 18 C -0.058 4.058 19 C -0.161 4.161 20 C 0.120 3.880 21 F -0.135 7.135 22 C -0.191 4.191 23 C 0.133 3.867 24 F -0.126 7.126 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.390 0.610 31 H 0.027 0.973 32 H 0.026 0.974 33 H 0.266 0.734 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.541 -8.477 20.698 22.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.056 4.056 3 H 0.112 0.888 4 C -0.175 4.175 5 C 0.283 3.717 6 O -0.432 6.432 7 N -0.361 5.361 8 C 0.129 3.871 9 C -0.582 4.582 10 H 0.081 0.919 11 C -0.140 4.140 12 N -0.523 5.523 13 Si 0.731 3.269 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.197 1.197 17 C -0.114 4.114 18 C -0.076 4.076 19 C -0.180 4.180 20 C 0.100 3.900 21 F -0.113 7.113 22 C -0.211 4.211 23 C 0.113 3.887 24 F -0.104 7.104 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.223 0.777 31 H 0.045 0.955 32 H 0.044 0.956 33 H 0.076 0.924 34 H 0.163 0.837 35 H 0.160 0.840 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.047 -7.559 20.632 22.068 hybrid contribution 0.816 -0.721 -0.703 1.296 sum 2.863 -8.280 19.929 21.770 Atomic orbital electron populations 1.21967 0.93041 1.01744 1.03718 1.19838 0.97266 0.99718 0.88780 0.88793 1.21752 1.02636 1.00103 0.92974 1.20378 0.80431 0.86042 0.84858 1.90630 1.41001 1.24891 1.86709 1.46487 1.55502 1.27255 1.06867 1.19097 0.96247 0.91810 0.79993 1.21232 1.37009 1.09180 0.90801 0.91922 1.24957 0.94893 0.94934 0.99248 1.69974 1.39102 1.18870 1.24336 0.86418 0.79158 0.79242 0.82112 1.20458 1.20997 1.19737 1.20175 0.98708 0.95112 0.97405 1.20816 0.97544 0.92899 0.96301 1.21208 1.00184 1.01552 0.95039 1.17285 0.97536 0.90328 0.84834 1.91524 1.87454 1.81544 1.50802 1.21008 1.05776 0.94630 0.99656 1.17179 0.97532 0.79310 0.94654 1.91544 1.90686 1.33699 1.94517 0.93088 0.92982 0.89337 0.89176 0.89297 0.77724 0.95546 0.95557 0.92436 0.83719 0.84030 0.83553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.74 37.16 0.32 -1.55 16 2 C -0.04 -0.47 2.19 -91.78 -0.20 -0.67 16 3 H 0.09 1.40 6.94 -51.92 -0.36 1.04 16 4 C -0.13 -1.74 4.92 -27.88 -0.14 -1.88 16 5 C 0.50 9.35 7.55 -10.98 -0.08 9.26 16 6 O -0.55 -12.47 13.97 5.55 0.08 -12.40 16 7 N -0.71 -14.49 5.55 -61.47 -0.34 -14.83 16 8 C 0.25 6.50 5.43 -5.20 -0.03 6.47 16 9 C -0.54 -14.59 9.28 -34.44 -0.32 -14.91 16 10 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 12 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 13 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 14 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 17 C -0.11 -1.20 4.79 -104.55 -0.50 -1.70 16 18 C -0.06 -0.49 8.76 -39.60 -0.35 -0.84 16 19 C -0.16 -1.28 10.03 -39.50 -0.40 -1.68 16 20 C 0.12 1.10 7.30 -39.43 -0.29 0.81 16 21 F -0.13 -1.30 17.27 2.25 0.04 -1.26 16 22 C -0.19 -1.82 10.01 -39.45 -0.39 -2.22 16 23 C 0.13 1.47 7.24 -39.43 -0.29 1.18 16 24 F -0.13 -1.59 16.19 2.25 0.04 -1.55 16 25 H 0.05 0.54 7.37 -51.93 -0.38 0.15 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 1.41 5.95 -51.93 -0.31 1.10 16 28 H 0.09 0.94 7.58 -51.93 -0.39 0.55 16 29 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.39 6.75 8.32 -40.82 -0.34 6.41 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.15 0.97 7.16 -52.49 -0.38 0.59 16 35 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.15 1.17 8.06 -52.48 -0.42 0.74 16 LS Contribution 316.72 15.07 4.77 4.77 Total: -1.00 -31.23 316.72 -6.68 -37.91 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -4.23 Total: 2.98 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -2.75 Total: -6.07 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.40 Total: -40.03 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.08 Total: -12.40 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.08 Total: -2.81 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.23 -6.68 -37.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427633616.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.415 kcal (2) G-P(sol) polarization free energy of solvation -31.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds