Wall clock time and date at job start Tue Mar 31 2020 05:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47099 * 2 1 4 4 C 1.52998 * 109.47247 * 119.99810 * 2 1 3 5 5 C 1.50706 * 109.47348 * 295.00243 * 4 2 1 6 6 O 1.21283 * 119.99503 * 359.97438 * 5 4 2 7 7 N 1.34773 * 120.00081 * 179.72561 * 5 4 2 8 8 C 1.46506 * 119.99968 * 180.02562 * 7 5 4 9 9 C 1.50690 * 109.47072 * 179.97438 * 8 7 5 10 10 H 1.08002 * 120.00210 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99820 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00036 * 359.97438 * 11 9 8 13 13 Si 1.86808 * 120.00010 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.46942 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47020 * 119.99661 * 13 11 9 16 16 H 1.48502 * 109.46685 * 239.99953 * 13 11 9 17 17 C 1.50702 * 109.47568 * 239.99881 * 2 1 3 18 18 C 1.38225 * 119.98581 * 300.00284 * 17 2 1 19 19 C 1.38183 * 120.04836 * 179.97438 * 18 17 2 20 20 C 1.38493 * 120.02891 * 359.97223 * 19 18 17 21 21 F 1.35103 * 120.01788 * 179.97438 * 20 19 18 22 22 C 1.38397 * 119.97038 * 0.02562 * 20 19 18 23 23 C 1.38436 * 119.95311 * 359.76642 * 22 20 19 24 24 F 1.35102 * 120.01635 * 180.23475 * 23 22 20 25 25 H 1.08997 * 109.46764 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47418 * 299.99897 * 1 2 3 27 27 H 1.08995 * 109.46959 * 60.00126 * 1 2 3 28 28 H 1.09001 * 109.47671 * 175.00452 * 4 2 1 29 29 H 1.08998 * 109.47454 * 55.00449 * 4 2 1 30 30 H 0.96998 * 120.00525 * 359.97438 * 7 5 4 31 31 H 1.09004 * 109.46587 * 299.99661 * 8 7 5 32 32 H 1.08998 * 109.47213 * 59.99069 * 8 7 5 33 33 H 0.97005 * 119.99861 * 179.97438 * 12 11 9 34 34 H 1.08005 * 119.97586 * 359.97353 * 18 17 2 35 35 H 1.08001 * 119.98724 * 179.97438 * 19 18 17 36 36 H 1.08005 * 120.02351 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 8 1.0117 1.0874 2.3632 7 7 1.9801 -0.3944 3.7004 8 6 1.5920 0.3619 4.8937 9 6 2.0881 -0.3522 6.1244 10 1 2.6372 -1.2772 6.0276 11 6 1.8411 0.1752 7.3741 12 7 1.1729 1.3018 7.4919 13 14 2.4566 -0.7096 8.8998 14 1 3.1753 -1.9458 8.4989 15 1 3.3803 0.1797 9.6489 16 1 1.3031 -1.0664 9.7642 17 6 2.0325 -0.7104 -1.2304 18 6 1.6984 -2.0338 -1.4489 19 6 2.1579 -2.6863 -2.5769 20 6 2.9534 -2.0147 -3.4903 21 9 3.4031 -2.6531 -4.5929 22 6 3.2885 -0.6897 -3.2726 23 6 2.8240 -0.0357 -2.1443 24 9 3.1464 1.2591 -1.9329 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.1264 -0.7994 1.2057 29 1 1.6055 -1.7198 1.2952 30 1 2.4803 -1.2206 3.7914 31 1 2.0303 1.3590 4.8502 32 1 0.5059 0.4439 4.9345 33 1 0.9988 1.6727 8.3712 34 1 1.0777 -2.5582 -0.7374 35 1 1.8966 -3.7204 -2.7465 36 1 3.9092 -0.1653 -3.9841 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427633617.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:06 Heat of formation + Delta-G solvation = -123.348623 kcal Electronic energy + Delta-G solvation = -21256.432513 eV Core-core repulsion = 17568.777234 eV Total energy + Delta-G solvation = -3687.655279 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.27655 -49.17152 -39.76399 -38.67524 -35.12972 -34.06954 -32.35241 -31.10318 -29.76122 -28.30034 -26.54483 -24.14124 -23.27100 -22.50247 -20.61061 -19.50668 -18.51529 -17.62089 -16.98162 -16.23397 -16.19125 -15.94606 -15.52947 -15.21630 -15.18172 -14.96217 -14.67753 -14.34679 -14.13558 -13.45154 -13.21131 -12.98554 -12.75751 -12.33656 -12.13566 -11.97917 -11.91059 -11.62267 -11.14312 -11.06848 -10.94855 -10.86375 -10.75158 -10.32643 -9.39727 -9.36070 -9.03585 -8.80948 -8.75301 -7.89244 -6.18547 -4.25438 0.66829 0.71548 3.06411 3.22074 3.29287 3.32199 3.35038 3.59241 3.99382 4.14843 4.28471 4.31995 4.52304 4.59734 4.83714 4.98644 5.12201 5.17850 5.31542 5.48608 5.57658 5.65118 5.65699 5.69905 5.73783 5.82476 5.91683 6.08728 6.33610 6.46722 6.55887 7.29198 7.42813 7.50148 7.64928 7.95444 8.61132 8.76348 9.08834 9.41471 10.91673 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.032212 B = 0.002983 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.026666 B = 9383.130997 C = 9706.870719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.037 4.037 3 H 0.094 0.906 4 C -0.134 4.134 5 C 0.498 3.502 6 O -0.553 6.553 7 N -0.713 5.713 8 C 0.249 3.751 9 C -0.543 4.543 10 H 0.063 0.937 11 C 0.063 3.937 12 N -0.885 5.885 13 Si 0.903 3.097 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.282 1.282 17 C -0.113 4.113 18 C -0.058 4.058 19 C -0.161 4.161 20 C 0.120 3.880 21 F -0.135 7.135 22 C -0.191 4.191 23 C 0.133 3.867 24 F -0.126 7.126 25 H 0.050 0.950 26 H 0.088 0.912 27 H 0.051 0.949 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.390 0.610 31 H 0.026 0.974 32 H 0.027 0.973 33 H 0.265 0.735 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.610 -8.448 -20.709 22.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.056 4.056 3 H 0.112 0.888 4 C -0.175 4.175 5 C 0.283 3.717 6 O -0.432 6.432 7 N -0.361 5.361 8 C 0.128 3.872 9 C -0.581 4.581 10 H 0.081 0.919 11 C -0.141 4.141 12 N -0.523 5.523 13 Si 0.731 3.269 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.208 1.208 17 C -0.114 4.114 18 C -0.076 4.076 19 C -0.180 4.180 20 C 0.100 3.900 21 F -0.113 7.113 22 C -0.211 4.211 23 C 0.113 3.887 24 F -0.104 7.104 25 H 0.069 0.931 26 H 0.107 0.893 27 H 0.070 0.930 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.223 0.777 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.163 0.837 35 H 0.160 0.840 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.115 -7.536 -20.645 22.079 hybrid contribution 0.812 -0.710 0.706 1.289 sum 2.927 -8.246 -19.939 21.774 Atomic orbital electron populations 1.21965 0.93040 1.01743 1.03714 1.19839 0.97264 0.99718 0.88778 0.88793 1.21754 1.02642 1.00096 0.92977 1.20378 0.80425 0.86044 0.84863 1.90630 1.40913 1.24960 1.86729 1.46488 1.55782 1.27037 1.06804 1.19104 0.96209 0.91872 0.79997 1.21267 1.37131 1.09011 0.90741 0.91866 1.24959 0.94879 0.94951 0.99264 1.69984 1.39168 1.18901 1.24219 0.86367 0.78587 0.79550 0.82444 1.19625 1.20790 1.20794 1.20177 0.98770 0.95073 0.97379 1.20814 0.97552 0.92906 0.96292 1.21205 1.00224 1.01565 0.94984 1.17286 0.97521 0.90341 0.84838 1.91525 1.87445 1.81551 1.50803 1.21006 1.05748 0.94616 0.99699 1.17178 0.97566 0.79248 0.94686 1.91544 1.90797 1.33542 1.94564 0.93089 0.89335 0.92989 0.89304 0.89171 0.77720 0.95561 0.95533 0.92492 0.83716 0.84031 0.83554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.75 37.16 0.33 -1.55 16 2 C -0.04 -0.47 2.19 -91.77 -0.20 -0.67 16 3 H 0.09 1.40 6.94 -51.93 -0.36 1.04 16 4 C -0.13 -1.74 4.91 -27.88 -0.14 -1.88 16 5 C 0.50 9.34 7.55 -10.98 -0.08 9.26 16 6 O -0.55 -12.47 13.97 5.56 0.08 -12.39 16 7 N -0.71 -14.48 5.55 -61.47 -0.34 -14.82 16 8 C 0.25 6.49 5.43 -5.20 -0.03 6.46 16 9 C -0.54 -14.56 9.28 -34.44 -0.32 -14.88 16 10 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.89 -25.92 13.29 55.43 0.74 -25.18 16 13 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 14 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 C -0.11 -1.20 4.79 -104.55 -0.50 -1.70 16 18 C -0.06 -0.49 8.76 -39.61 -0.35 -0.84 16 19 C -0.16 -1.28 10.02 -39.51 -0.40 -1.68 16 20 C 0.12 1.10 7.30 -39.43 -0.29 0.81 16 21 F -0.13 -1.30 17.27 2.25 0.04 -1.26 16 22 C -0.19 -1.82 10.01 -39.45 -0.39 -2.22 16 23 C 0.13 1.46 7.24 -39.43 -0.29 1.18 16 24 F -0.13 -1.58 16.19 2.25 0.04 -1.55 16 25 H 0.05 0.54 7.39 -51.93 -0.38 0.15 16 26 H 0.09 1.41 5.95 -51.93 -0.31 1.10 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.09 0.94 7.57 -51.93 -0.39 0.55 16 30 H 0.39 6.75 8.32 -40.82 -0.34 6.41 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.15 0.97 7.16 -52.48 -0.38 0.59 16 35 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.15 1.17 8.06 -52.48 -0.42 0.74 16 LS Contribution 316.71 15.07 4.77 4.77 Total: -1.00 -31.23 316.71 -6.68 -37.91 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -4.23 Total: 2.95 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -2.75 Total: -6.07 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.40 Total: -40.00 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.08 Total: -12.39 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.08 Total: -2.81 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.23 -6.68 -37.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427633617.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.435 kcal (2) G-P(sol) polarization free energy of solvation -31.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds