Wall clock time and date at job start Tue Mar 31 2020 05:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47030 * 2 1 4 4 N 1.46506 * 109.46997 * 119.99458 * 2 1 3 5 5 C 1.34776 * 120.00122 * 275.27975 * 4 2 1 6 6 O 1.21589 * 119.99901 * 359.71817 * 5 4 2 7 7 C 1.47639 * 119.99809 * 179.72544 * 5 4 2 8 8 C 1.40015 * 119.89835 * 359.72138 * 7 5 4 9 9 C 1.36319 * 120.10342 * 179.71961 * 8 7 5 10 10 C 1.40884 * 119.89291 * 0.57891 * 9 8 7 11 11 C 1.41109 * 120.09769 * 179.67501 * 10 9 8 12 12 H 1.08010 * 119.99586 * 204.64749 * 11 10 9 13 13 C 1.40223 * 120.00541 * 24.65633 * 11 10 9 14 14 N 1.30648 * 119.99696 * 17.85901 * 13 11 10 15 15 Si 1.86802 * 120.00266 * 197.86235 * 13 11 10 16 16 H 1.48498 * 109.47051 * 59.99678 * 15 13 11 17 17 H 1.48491 * 109.47359 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47120 * 299.99890 * 15 13 11 19 19 C 1.40881 * 119.79587 * 359.69467 * 10 9 8 20 20 C 1.36322 * 119.89248 * 0.02562 * 19 10 9 21 21 C 1.53002 * 109.47628 * 239.99592 * 2 1 3 22 22 C 1.53000 * 109.47325 * 180.02562 * 21 2 1 23 23 F 1.39905 * 109.46689 * 300.00262 * 21 2 1 24 24 F 1.39903 * 109.46758 * 59.99869 * 21 2 1 25 25 H 1.09006 * 109.46672 * 60.00613 * 1 2 3 26 26 H 1.09001 * 109.47030 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47485 * 300.00721 * 1 2 3 28 28 H 0.97003 * 119.99748 * 95.00110 * 4 2 1 29 29 H 1.07996 * 119.94523 * 0.02562 * 8 7 5 30 30 H 1.07999 * 120.04842 * 180.25343 * 9 8 7 31 31 H 0.96999 * 119.99821 * 180.02562 * 14 13 11 32 32 H 1.07997 * 120.05920 * 179.97438 * 19 10 9 33 33 H 1.07998 * 119.94983 * 179.97438 * 20 19 10 34 34 H 1.08997 * 109.47145 * 59.99999 * 22 21 2 35 35 H 1.09002 * 109.47012 * 180.02562 * 22 21 2 36 36 H 1.09001 * 109.46992 * 300.00199 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1417 -0.0195 2.3586 6 8 1.8526 1.1603 2.4131 7 6 2.6280 -0.7169 3.5656 8 6 2.9549 -2.0769 3.5017 9 6 3.4098 -2.7236 4.6122 10 6 3.5392 -2.0243 5.8284 11 6 4.0031 -2.6912 6.9822 12 1 3.7419 -2.3198 7.9622 13 6 4.8033 -3.8358 6.8565 14 7 5.4065 -4.0901 5.7258 15 14 5.0068 -4.9970 8.3055 16 1 3.6789 -5.5295 8.7033 17 1 5.8947 -6.1221 7.9174 18 1 5.6080 -4.2626 9.4477 19 6 3.2035 -0.6574 5.8891 20 6 2.7549 -0.0177 4.7720 21 6 2.0401 -0.7213 -1.2492 22 6 3.5701 -0.7218 -1.2488 23 9 1.5737 -2.0403 -1.2491 24 9 1.5738 -0.0619 -2.3915 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 2.2490 -1.6317 1.1528 29 1 2.8512 -2.6131 2.5700 30 1 3.6656 -3.7716 4.5609 31 1 5.9598 -4.8821 5.6388 32 1 3.3007 -0.1174 6.8193 33 1 2.4970 1.0300 4.8176 34 1 3.9330 -1.2359 -0.3588 35 1 3.9335 -1.2353 -2.1390 36 1 3.9338 0.3057 -1.2486 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452461438.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:23 Heat of formation + Delta-G solvation = -135.151416 kcal Electronic energy + Delta-G solvation = -21932.407865 eV Core-core repulsion = 18244.240778 eV Total energy + Delta-G solvation = -3688.167087 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.10121 -47.07801 -39.33843 -37.30758 -35.43395 -33.93359 -31.63641 -30.53498 -29.60096 -29.45310 -25.98334 -24.27457 -22.35510 -21.20897 -20.76184 -19.85606 -17.76285 -17.57608 -17.53321 -16.37454 -15.96301 -15.63693 -15.16051 -14.44846 -14.11192 -14.05487 -13.72990 -13.42664 -13.30122 -13.28223 -12.93392 -12.81057 -12.67465 -12.47722 -12.20119 -12.08901 -11.89637 -11.59806 -11.41001 -11.29941 -11.02906 -10.77967 -10.69563 -10.12189 -9.61275 -9.40097 -9.10564 -8.84493 -7.78338 -7.61088 -7.09128 -4.66134 2.15309 2.88770 2.91493 2.95209 2.98452 3.31735 3.65634 3.70068 3.78724 4.00493 4.24829 4.49620 4.51642 5.15002 5.19835 5.34106 5.48488 5.51872 5.63096 5.75087 5.76761 5.98306 6.04315 6.19633 6.25813 6.69836 6.73087 6.77212 6.97377 7.07170 7.37381 7.57033 7.71468 7.80197 8.01004 8.07958 8.34072 8.57343 8.69340 8.92646 9.82738 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.027938 B = 0.003820 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.962074 B = 7327.637639 C = 7953.192980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.112 3.888 3 H 0.112 0.888 4 N -0.735 5.735 5 C 0.577 3.423 6 O -0.571 6.571 7 C -0.287 4.287 8 C -0.062 4.062 9 C -0.178 4.178 10 C 0.129 3.871 11 C -0.441 4.441 12 H 0.085 0.915 13 C 0.075 3.925 14 N -0.770 5.770 15 Si 0.914 3.086 16 H -0.260 1.260 17 H -0.275 1.275 18 H -0.262 1.262 19 C -0.239 4.239 20 C -0.020 4.020 21 C 0.281 3.719 22 C -0.195 4.195 23 F -0.197 7.197 24 F -0.196 7.196 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.401 0.599 29 H 0.088 0.912 30 H 0.121 0.879 31 H 0.288 0.712 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.469 0.475 -9.500 9.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.005 3.995 3 H 0.130 0.870 4 N -0.390 5.390 5 C 0.373 3.627 6 O -0.452 6.452 7 C -0.291 4.291 8 C -0.081 4.081 9 C -0.197 4.197 10 C 0.126 3.874 11 C -0.468 4.468 12 H 0.103 0.897 13 C -0.147 4.147 14 N -0.393 5.393 15 Si 0.738 3.262 16 H -0.184 1.184 17 H -0.200 1.200 18 H -0.186 1.186 19 C -0.259 4.259 20 C -0.039 4.039 21 C 0.244 3.756 22 C -0.252 4.252 23 F -0.178 7.178 24 F -0.177 7.177 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.237 0.763 29 H 0.106 0.894 30 H 0.138 0.862 31 H 0.099 0.901 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.510 1.127 -9.613 9.999 hybrid contribution 0.231 -1.151 0.334 1.221 sum -2.279 -0.024 -9.279 9.555 Atomic orbital electron populations 1.22190 0.93919 1.03119 1.03404 1.21630 0.96065 0.98361 0.83457 0.87015 1.45853 1.70140 1.14244 1.08740 1.18595 0.75621 0.85949 0.82542 1.90644 1.52839 1.16401 1.85353 1.18809 1.22013 0.95152 0.93175 1.20470 0.97550 0.92975 0.97133 1.20977 1.05470 1.00216 0.93029 1.17788 0.86303 0.90463 0.92850 1.19852 1.25067 1.07284 0.94629 0.89665 1.26107 0.93418 0.97717 0.97456 1.69730 1.19224 1.24245 1.26094 0.86248 0.79537 0.79260 0.81185 1.18427 1.20004 1.18616 1.20715 1.12730 0.94871 0.97539 1.20355 0.94090 0.97779 0.91673 1.21338 0.94226 0.75813 0.84191 1.22775 0.91029 1.05851 1.05560 1.93009 1.90555 1.37513 1.96769 1.93002 1.90652 1.81035 1.52984 0.91354 0.91743 0.90603 0.76254 0.89353 0.86161 0.90092 0.88333 0.88061 0.88691 0.89980 0.89102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 9.24 37.16 0.34 -1.89 16 2 C 0.11 1.55 2.24 -67.93 -0.15 1.40 16 3 H 0.11 1.62 7.58 -51.93 -0.39 1.22 16 4 N -0.74 -11.71 4.31 -54.81 -0.24 -11.95 16 5 C 0.58 11.62 7.73 -12.42 -0.10 11.52 16 6 O -0.57 -12.80 15.99 5.29 0.08 -12.72 16 7 C -0.29 -6.31 5.89 -104.73 -0.62 -6.92 16 8 C -0.06 -1.33 9.47 -39.61 -0.38 -1.71 16 9 C -0.18 -4.23 8.63 -39.27 -0.34 -4.57 16 10 C 0.13 3.21 5.57 -106.81 -0.60 2.62 16 11 C -0.44 -10.72 9.04 -37.75 -0.34 -11.06 16 12 H 0.09 1.97 7.91 -52.48 -0.42 1.56 16 13 C 0.07 1.70 5.14 -17.31 -0.09 1.61 16 14 N -0.77 -17.99 10.95 55.56 0.61 -17.38 16 15 Si 0.91 16.88 29.60 -169.99 -5.03 11.84 16 16 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 17 H -0.28 -4.94 7.11 56.52 0.40 -4.54 16 18 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 19 C -0.24 -5.63 9.73 -39.27 -0.38 -6.02 16 20 C -0.02 -0.45 9.52 -39.61 -0.38 -0.83 16 21 C 0.28 3.44 1.78 -26.73 -0.05 3.39 16 22 C -0.19 -2.02 9.23 37.16 0.34 -1.68 16 23 F -0.20 -2.61 16.18 2.25 0.04 -2.57 16 24 F -0.20 -2.45 16.54 2.25 0.04 -2.42 16 25 H 0.07 0.79 7.80 -51.93 -0.41 0.39 16 26 H 0.06 0.84 7.80 -51.93 -0.41 0.43 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.40 5.91 6.09 -40.82 -0.25 5.66 16 29 H 0.09 1.61 6.37 -52.49 -0.33 1.27 16 30 H 0.12 2.91 6.16 -52.49 -0.32 2.59 16 31 H 0.29 6.06 8.29 -40.82 -0.34 5.72 16 32 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 33 H 0.10 2.23 7.63 -52.49 -0.40 1.83 16 34 H 0.09 1.03 7.44 -51.93 -0.39 0.64 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 313.68 15.07 4.73 4.73 Total: -1.00 -26.78 313.68 -6.64 -33.42 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -4.14 Total: 11.19 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -2.73 Total: -14.14 kcal Atomic # 7 Polarization: -29.71 SS G_CDS: 0.37 Total: -29.33 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.08 Total: -12.72 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 0.07 Total: -4.99 kcal Atomic # 14 Polarization: 16.88 SS G_CDS: -5.03 Total: 11.84 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -26.78 -6.64 -33.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452461438.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.733 kcal (2) G-P(sol) polarization free energy of solvation -26.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds