Wall clock time and date at job start Tue Mar 31 2020 05:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47030 * 2 1 4 4 N 1.46506 * 109.46997 * 119.99458 * 2 1 3 5 5 C 1.34776 * 120.00122 * 275.27975 * 4 2 1 6 6 O 1.21589 * 119.99901 * 359.71817 * 5 4 2 7 7 C 1.47639 * 119.99809 * 179.72544 * 5 4 2 8 8 C 1.40015 * 119.89835 * 359.72138 * 7 5 4 9 9 C 1.36319 * 120.10342 * 179.71961 * 8 7 5 10 10 C 1.40884 * 119.89291 * 0.57891 * 9 8 7 11 11 C 1.41109 * 120.09769 * 179.67501 * 10 9 8 12 12 H 1.08010 * 119.99586 * 204.64749 * 11 10 9 13 13 C 1.40223 * 120.00541 * 24.65633 * 11 10 9 14 14 N 1.30648 * 119.99696 * 17.85901 * 13 11 10 15 15 Si 1.86802 * 120.00266 * 197.86235 * 13 11 10 16 16 H 1.48498 * 109.47051 * 59.99678 * 15 13 11 17 17 H 1.48491 * 109.47359 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47120 * 299.99890 * 15 13 11 19 19 C 1.40881 * 119.79587 * 359.69467 * 10 9 8 20 20 C 1.36322 * 119.89248 * 0.02562 * 19 10 9 21 21 C 1.53002 * 109.47628 * 239.99592 * 2 1 3 22 22 C 1.53000 * 109.47325 * 180.02562 * 21 2 1 23 23 F 1.39905 * 109.46689 * 300.00262 * 21 2 1 24 24 F 1.39903 * 109.46758 * 59.99869 * 21 2 1 25 25 H 1.09006 * 109.46672 * 60.00613 * 1 2 3 26 26 H 1.09001 * 109.47030 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47485 * 300.00721 * 1 2 3 28 28 H 0.97003 * 119.99748 * 95.00110 * 4 2 1 29 29 H 1.07996 * 119.94523 * 0.02562 * 8 7 5 30 30 H 1.07999 * 120.04842 * 180.25343 * 9 8 7 31 31 H 0.96999 * 119.99821 * 180.02562 * 14 13 11 32 32 H 1.07997 * 120.05920 * 179.97438 * 19 10 9 33 33 H 1.07998 * 119.94983 * 179.97438 * 20 19 10 34 34 H 1.08997 * 109.47145 * 59.99999 * 22 21 2 35 35 H 1.09002 * 109.47012 * 180.02562 * 22 21 2 36 36 H 1.09001 * 109.46992 * 300.00199 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1417 -0.0195 2.3586 6 8 1.8526 1.1603 2.4131 7 6 2.6280 -0.7169 3.5656 8 6 2.9549 -2.0769 3.5017 9 6 3.4098 -2.7236 4.6122 10 6 3.5392 -2.0243 5.8284 11 6 4.0031 -2.6912 6.9822 12 1 3.7419 -2.3198 7.9622 13 6 4.8033 -3.8358 6.8565 14 7 5.4065 -4.0901 5.7258 15 14 5.0068 -4.9970 8.3055 16 1 3.6789 -5.5295 8.7033 17 1 5.8947 -6.1221 7.9174 18 1 5.6080 -4.2626 9.4477 19 6 3.2035 -0.6574 5.8891 20 6 2.7549 -0.0177 4.7720 21 6 2.0401 -0.7213 -1.2492 22 6 3.5701 -0.7218 -1.2488 23 9 1.5737 -2.0403 -1.2491 24 9 1.5738 -0.0619 -2.3915 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 2.2490 -1.6317 1.1528 29 1 2.8512 -2.6131 2.5700 30 1 3.6656 -3.7716 4.5609 31 1 5.9598 -4.8821 5.6388 32 1 3.3007 -0.1174 6.8193 33 1 2.4970 1.0300 4.8176 34 1 3.9330 -1.2359 -0.3588 35 1 3.9335 -1.2353 -2.1390 36 1 3.9338 0.3057 -1.2486 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452461438.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:23 Heat of formation + Delta-G solvation = -148.630993 kcal Electronic energy + Delta-G solvation = -21932.992384 eV Core-core repulsion = 18244.240778 eV Total energy + Delta-G solvation = -3688.751605 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.10632 -48.08430 -40.92008 -39.01850 -36.81406 -35.67525 -33.03663 -31.74848 -31.30139 -30.94871 -27.69840 -25.37110 -23.89127 -22.86130 -22.14201 -21.38092 -19.37615 -19.08590 -18.65763 -17.43392 -17.26413 -17.23737 -16.54629 -15.88875 -15.74007 -15.45656 -15.07100 -14.90701 -14.46093 -14.43154 -14.39359 -14.03224 -13.91033 -13.71339 -13.52195 -13.40413 -13.21909 -13.05025 -12.84621 -12.72819 -12.57274 -12.36166 -11.82738 -11.79082 -11.36654 -11.11589 -10.77768 -10.24981 -9.57565 -9.42038 -8.79677 -6.48619 0.42696 1.15835 1.39485 1.44753 1.52597 2.01755 2.09093 2.17665 2.61635 2.78221 3.02122 3.27577 3.52239 3.69317 4.04117 4.11769 4.26824 4.31008 4.45219 4.51747 4.58181 4.63800 4.81031 4.93196 4.96633 5.02890 5.10126 5.15637 5.29681 5.38595 5.58641 5.81137 5.93037 5.99450 6.22939 6.53407 6.57079 6.77154 6.88659 7.34654 8.15241 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.027938 B = 0.003820 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.962074 B = 7327.637639 C = 7953.192980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.107 3.893 3 H 0.109 0.891 4 N -0.718 5.718 5 C 0.582 3.418 6 O -0.595 6.595 7 C -0.294 4.294 8 C -0.053 4.053 9 C -0.198 4.198 10 C 0.102 3.898 11 C -0.474 4.474 12 H 0.085 0.915 13 C 0.040 3.960 14 N -0.796 5.796 15 Si 0.986 3.014 16 H -0.259 1.259 17 H -0.264 1.264 18 H -0.259 1.259 19 C -0.253 4.253 20 C -0.030 4.030 21 C 0.288 3.712 22 C -0.194 4.194 23 F -0.202 7.202 24 F -0.195 7.195 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.409 0.591 29 H 0.122 0.878 30 H 0.113 0.887 31 H 0.297 0.703 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.316 -0.432 -10.511 10.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.001 3.999 3 H 0.127 0.873 4 N -0.372 5.372 5 C 0.376 3.624 6 O -0.479 6.479 7 C -0.298 4.298 8 C -0.072 4.072 9 C -0.217 4.217 10 C 0.099 3.901 11 C -0.501 4.501 12 H 0.104 0.896 13 C -0.180 4.180 14 N -0.419 5.419 15 Si 0.806 3.194 16 H -0.183 1.183 17 H -0.188 1.188 18 H -0.183 1.183 19 C -0.273 4.273 20 C -0.049 4.049 21 C 0.251 3.749 22 C -0.252 4.252 23 F -0.183 7.183 24 F -0.176 7.176 25 H 0.105 0.895 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.247 0.753 29 H 0.140 0.860 30 H 0.131 0.869 31 H 0.109 0.891 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.109 0.891 35 H 0.118 0.882 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.362 0.212 -10.666 10.926 hybrid contribution 0.142 -0.799 0.535 0.972 sum -2.220 -0.587 -10.131 10.388 Atomic orbital electron populations 1.22159 0.93344 1.03376 1.03478 1.21786 0.96554 0.98266 0.83263 0.87344 1.45619 1.68814 1.14430 1.08302 1.18291 0.75463 0.85505 0.83118 1.90633 1.53960 1.17409 1.85884 1.19093 1.21400 0.95527 0.93804 1.20712 0.95842 0.92805 0.97797 1.21009 1.06960 1.00075 0.93695 1.18131 0.87070 0.91119 0.93765 1.20121 1.26431 1.08936 0.94597 0.89644 1.26894 0.92407 0.98475 1.00183 1.69749 1.19427 1.24979 1.27789 0.85179 0.79522 0.77137 0.77595 1.18303 1.18778 1.18290 1.20854 1.13371 0.94857 0.98182 1.20511 0.94204 0.98105 0.92097 1.21271 0.95204 0.75228 0.83212 1.22814 0.89361 1.06708 1.06282 1.93007 1.90740 1.37780 1.96738 1.93009 1.90780 1.81042 1.52760 0.89503 0.91371 0.92346 0.75340 0.86031 0.86886 0.89129 0.87806 0.87709 0.89074 0.88195 0.88255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 9.24 71.98 0.66 -3.45 16 2 C 0.11 2.78 2.24 44.99 0.10 2.88 16 3 H 0.11 2.96 7.58 -2.39 -0.02 2.94 16 4 N -0.72 -21.63 4.31 -445.58 -1.92 -23.56 16 5 C 0.58 22.86 7.73 86.73 0.67 23.53 16 6 O -0.60 -26.38 15.99 -4.00 -0.06 -26.44 16 7 C -0.29 -12.79 5.89 -19.93 -0.12 -12.91 16 8 C -0.05 -2.22 9.47 22.25 0.21 -2.01 16 9 C -0.20 -9.52 8.63 22.47 0.19 -9.33 16 10 C 0.10 5.19 5.57 -21.28 -0.12 5.08 16 11 C -0.47 -23.46 9.04 23.46 0.21 -23.25 16 12 H 0.09 4.05 7.91 -2.91 -0.02 4.03 16 13 C 0.04 1.81 5.14 85.35 0.44 2.25 16 14 N -0.80 -37.17 10.95 21.87 0.24 -36.93 16 15 Si 0.99 34.05 29.60 68.60 2.03 36.08 16 16 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 17 H -0.26 -8.53 7.11 99.48 0.71 -7.83 16 18 H -0.26 -8.75 7.11 99.48 0.71 -8.04 16 19 C -0.25 -12.22 9.73 22.47 0.22 -12.01 16 20 C -0.03 -1.39 9.52 22.25 0.21 -1.18 16 21 C 0.29 6.32 1.78 30.60 0.05 6.38 16 22 C -0.19 -3.52 9.23 71.98 0.66 -2.86 16 23 F -0.20 -4.80 16.18 44.97 0.73 -4.07 16 24 F -0.19 -4.38 16.54 44.97 0.74 -3.64 16 25 H 0.09 1.83 7.80 -2.38 -0.02 1.81 16 26 H 0.07 1.64 7.80 -2.39 -0.02 1.62 16 27 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.41 11.11 6.09 -92.71 -0.57 10.55 16 29 H 0.12 4.18 6.37 -2.91 -0.02 4.16 16 30 H 0.11 5.53 6.16 -2.91 -0.02 5.51 16 31 H 0.30 12.36 8.29 -92.71 -0.77 11.59 16 32 H 0.10 4.72 8.06 -2.91 -0.02 4.70 16 33 H 0.10 4.68 7.63 -2.91 -0.02 4.66 16 34 H 0.09 1.74 7.44 -2.39 -0.02 1.73 16 35 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -57.11 313.68 5.71 -51.40 By element: Atomic # 1 Polarization: 33.48 SS G_CDS: 0.55 Total: 34.03 kcal Atomic # 6 Polarization: -30.28 SS G_CDS: 3.40 Total: -26.87 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: -1.68 Total: -60.49 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.06 Total: -26.44 kcal Atomic # 9 Polarization: -9.19 SS G_CDS: 1.47 Total: -7.71 kcal Atomic # 14 Polarization: 34.05 SS G_CDS: 2.03 Total: 36.08 kcal Total: -57.11 5.71 -51.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452461438.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.227 kcal (2) G-P(sol) polarization free energy of solvation -57.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds