Wall clock time and date at job start Tue Mar 31 2020 05:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47094 * 2 1 4 4 N 1.46500 * 109.47296 * 239.99429 * 2 1 3 5 5 C 1.34779 * 119.99900 * 85.00019 * 4 2 1 6 6 O 1.21589 * 120.00034 * 0.02562 * 5 4 2 7 7 C 1.47636 * 120.00143 * 179.97438 * 5 4 2 8 8 C 1.40009 * 119.89404 * 359.72635 * 7 5 4 9 9 C 1.36320 * 120.10690 * 179.75601 * 8 7 5 10 10 C 1.40888 * 119.89144 * 0.51908 * 9 8 7 11 11 C 1.41105 * 120.10938 * 179.71251 * 10 9 8 12 12 H 1.08003 * 120.00688 * 204.64874 * 11 10 9 13 13 C 1.40233 * 119.99541 * 24.65115 * 11 10 9 14 14 N 1.30644 * 120.00024 * 17.86692 * 13 11 10 15 15 Si 1.86801 * 119.99757 * 197.87653 * 13 11 10 16 16 H 1.48492 * 109.47290 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.46910 * 119.99972 * 15 13 11 18 18 H 1.48497 * 109.46856 * 239.99460 * 15 13 11 19 19 C 1.40892 * 119.79384 * 359.73538 * 10 9 8 20 20 C 1.36318 * 119.88866 * 0.02562 * 19 10 9 21 21 C 1.52997 * 109.46758 * 119.99877 * 2 1 3 22 22 C 1.53002 * 109.47128 * 180.02562 * 21 2 1 23 23 F 1.39906 * 109.47123 * 299.99639 * 21 2 1 24 24 F 1.39901 * 109.47497 * 59.99967 * 21 2 1 25 25 H 1.09007 * 109.47180 * 60.00515 * 1 2 3 26 26 H 1.08998 * 109.47367 * 300.00529 * 1 2 3 27 27 H 1.09001 * 109.47094 * 179.97438 * 1 2 3 28 28 H 0.96994 * 120.00273 * 265.00172 * 4 2 1 29 29 H 1.07998 * 119.95087 * 0.02562 * 8 7 5 30 30 H 1.08001 * 120.05917 * 180.23245 * 9 8 7 31 31 H 0.97005 * 120.00022 * 179.97438 * 14 13 11 32 32 H 1.08001 * 120.05784 * 179.97438 * 19 10 9 33 33 H 1.08005 * 119.94863 * 179.97438 * 20 19 10 34 34 H 1.09001 * 109.46927 * 59.99998 * 22 21 2 35 35 H 1.08997 * 109.47661 * 179.97438 * 22 21 2 36 36 H 1.09003 * 109.47005 * 300.00158 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8584 1.1614 -2.4117 7 6 2.6398 -0.7143 -3.5624 8 6 2.9781 -2.0713 -3.4954 9 6 3.4288 -2.7193 -4.6068 10 6 3.5642 -2.0187 -5.8216 11 6 4.0360 -2.6835 -6.9733 12 1 4.5125 -2.1225 -7.7637 13 6 3.8862 -4.0728 -7.0917 14 7 3.0261 -4.7037 -6.3374 15 14 4.9167 -5.0213 -8.3278 16 1 5.8078 -4.0815 -9.0542 17 1 5.7382 -6.0324 -7.6151 18 1 4.0226 -5.7041 -9.2971 19 6 3.2276 -0.6520 -5.8828 20 6 2.7732 -0.0137 -4.7673 21 6 2.0399 -0.7212 1.2493 22 6 3.5699 -0.7207 1.2497 23 9 1.5736 -0.0616 2.3915 24 9 1.5736 -2.0402 1.2493 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 2.2491 -1.6318 -1.1525 29 1 2.8778 -2.6066 -2.5628 30 1 3.6860 -3.7670 -4.5551 31 1 2.9222 -5.6647 -6.4195 32 1 3.3302 -0.1107 -6.8117 33 1 2.5152 1.0341 -4.8130 34 1 3.9329 0.3071 1.2499 35 1 3.9333 -1.2341 2.1399 36 1 3.9336 -1.2343 0.3597 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452461439.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:25 Heat of formation + Delta-G solvation = -135.085291 kcal Electronic energy + Delta-G solvation = -21928.322401 eV Core-core repulsion = 18240.158181 eV Total energy + Delta-G solvation = -3688.164220 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.10429 -47.08111 -39.33919 -37.30751 -35.43559 -33.93377 -31.64078 -30.54122 -29.60061 -29.45277 -25.98347 -24.27717 -22.35683 -21.20986 -20.76307 -19.85755 -17.76448 -17.57942 -17.53561 -16.38339 -15.96587 -15.63494 -15.16002 -14.43873 -14.11985 -14.05465 -13.73159 -13.42887 -13.29879 -13.28905 -12.93037 -12.82545 -12.69360 -12.47248 -12.20261 -12.06049 -11.95311 -11.58522 -11.39659 -11.31405 -11.00355 -10.78265 -10.69841 -10.09919 -9.62165 -9.40614 -9.10814 -8.84374 -7.78383 -7.61049 -7.09153 -4.66051 2.14706 2.86457 2.92159 2.97550 2.98552 3.31622 3.65389 3.70131 3.78379 3.99911 4.24269 4.48869 4.51138 5.14423 5.20196 5.32640 5.47638 5.51734 5.63581 5.72506 5.77384 5.98235 6.04435 6.21053 6.25827 6.69876 6.73084 6.77319 6.97367 7.07094 7.37571 7.57051 7.71433 7.80581 8.01013 8.07920 8.34369 8.57488 8.69343 8.92582 9.82674 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.028094 B = 0.003794 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.416550 B = 7378.363299 C = 7937.719037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.112 3.888 3 H 0.112 0.888 4 N -0.735 5.735 5 C 0.577 3.423 6 O -0.571 6.571 7 C -0.287 4.287 8 C -0.062 4.062 9 C -0.178 4.178 10 C 0.129 3.871 11 C -0.440 4.440 12 H 0.086 0.914 13 C 0.074 3.926 14 N -0.769 5.769 15 Si 0.913 3.087 16 H -0.257 1.257 17 H -0.268 1.268 18 H -0.271 1.271 19 C -0.239 4.239 20 C -0.020 4.020 21 C 0.281 3.719 22 C -0.194 4.194 23 F -0.196 7.196 24 F -0.197 7.197 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.401 0.599 29 H 0.088 0.912 30 H 0.121 0.879 31 H 0.287 0.713 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.476 1.241 10.259 10.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.005 3.995 3 H 0.130 0.870 4 N -0.390 5.390 5 C 0.373 3.627 6 O -0.452 6.452 7 C -0.291 4.291 8 C -0.081 4.081 9 C -0.197 4.197 10 C 0.125 3.875 11 C -0.468 4.468 12 H 0.104 0.896 13 C -0.148 4.148 14 N -0.392 5.392 15 Si 0.737 3.263 16 H -0.180 1.180 17 H -0.193 1.193 18 H -0.196 1.196 19 C -0.258 4.258 20 C -0.039 4.039 21 C 0.244 3.756 22 C -0.252 4.252 23 F -0.177 7.177 24 F -0.178 7.178 25 H 0.094 0.906 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.237 0.763 29 H 0.106 0.894 30 H 0.138 0.862 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.139 1.822 10.293 10.454 hybrid contribution 0.279 -1.152 -0.307 1.224 sum 0.418 0.671 9.987 10.018 Atomic orbital electron populations 1.22192 0.93900 1.03165 1.03402 1.21628 0.96107 0.98329 0.83440 0.87015 1.45849 1.70105 1.14189 1.08831 1.18596 0.75631 0.85951 0.82531 1.90644 1.52904 1.16433 1.85253 1.18806 1.21972 0.94971 0.93395 1.20469 0.97762 0.92775 0.97118 1.20979 1.06592 1.00377 0.91760 1.17802 0.85926 0.91124 0.92601 1.19912 1.31634 0.91953 1.03261 0.89593 1.26118 0.93761 0.98350 0.96523 1.69748 1.24974 1.11178 1.33322 0.86163 0.80354 0.79621 0.80197 1.18015 1.19334 1.19621 1.20718 1.11557 0.96238 0.97322 1.20355 0.94327 0.97650 0.91572 1.21338 0.94195 0.75838 0.84215 1.22772 0.91079 1.05824 1.05509 1.93004 1.90660 1.81029 1.52981 1.93011 1.90549 1.37485 1.96767 0.90599 0.91352 0.91713 0.76257 0.89356 0.86164 0.90182 0.88329 0.88063 0.89106 0.89989 0.88743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 9.24 37.16 0.34 -1.93 16 2 C 0.11 1.55 2.24 -67.93 -0.15 1.40 16 3 H 0.11 1.61 7.58 -51.93 -0.39 1.21 16 4 N -0.74 -11.71 4.31 -54.81 -0.24 -11.95 16 5 C 0.58 11.61 7.73 -12.42 -0.10 11.52 16 6 O -0.57 -12.80 15.98 5.29 0.08 -12.72 16 7 C -0.29 -6.30 5.89 -104.73 -0.62 -6.92 16 8 C -0.06 -1.33 9.47 -39.61 -0.38 -1.70 16 9 C -0.18 -4.24 8.64 -39.27 -0.34 -4.58 16 10 C 0.13 3.20 5.58 -106.80 -0.60 2.60 16 11 C -0.44 -10.70 9.04 -37.75 -0.34 -11.04 16 12 H 0.09 2.00 7.91 -52.48 -0.42 1.58 16 13 C 0.07 1.69 5.14 -17.31 -0.09 1.60 16 14 N -0.77 -18.06 10.95 55.56 0.61 -17.45 16 15 Si 0.91 16.87 29.60 -169.99 -5.03 11.83 16 16 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 17 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 18 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 19 C -0.24 -5.63 9.73 -39.27 -0.38 -6.01 16 20 C -0.02 -0.45 9.52 -39.61 -0.38 -0.83 16 21 C 0.28 3.41 1.78 -26.73 -0.05 3.37 16 22 C -0.19 -1.96 9.23 37.16 0.34 -1.62 16 23 F -0.20 -2.44 16.54 2.25 0.04 -2.41 16 24 F -0.20 -2.61 16.18 2.25 0.04 -2.57 16 25 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.07 0.80 7.80 -51.93 -0.41 0.40 16 27 H 0.06 0.86 7.80 -51.93 -0.41 0.45 16 28 H 0.40 5.91 6.10 -40.82 -0.25 5.67 16 29 H 0.09 1.61 6.37 -52.49 -0.33 1.27 16 30 H 0.12 2.91 6.16 -52.49 -0.32 2.59 16 31 H 0.29 6.03 8.29 -40.82 -0.34 5.70 16 32 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 33 H 0.10 2.23 7.63 -52.48 -0.40 1.83 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.98 7.45 -51.93 -0.39 0.59 16 LS Contribution 313.69 15.07 4.73 4.73 Total: -1.00 -26.93 313.69 -6.64 -33.56 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -4.14 Total: 11.12 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -2.73 Total: -14.14 kcal Atomic # 7 Polarization: -29.78 SS G_CDS: 0.37 Total: -29.40 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.08 Total: -12.72 kcal Atomic # 9 Polarization: -5.05 SS G_CDS: 0.07 Total: -4.98 kcal Atomic # 14 Polarization: 16.87 SS G_CDS: -5.03 Total: 11.83 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -26.93 -6.64 -33.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452461439.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.521 kcal (2) G-P(sol) polarization free energy of solvation -26.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds