Wall clock time and date at job start Tue Mar 31 2020 05:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45194 * 109.47382 * 2 1 4 4 C 1.34640 * 117.00105 * 179.97438 * 3 2 1 5 5 O 1.21395 * 120.00345 * 0.02562 * 4 3 2 6 6 C 1.48374 * 119.99746 * 179.97438 * 4 3 2 7 7 N 1.30683 * 126.41225 * 359.97438 * 6 4 3 8 8 O 1.21285 * 110.11020 * 180.02562 * 7 6 4 9 9 C 1.33700 * 110.01596 * 359.97438 * 8 7 6 10 10 C 1.50704 * 126.43925 * 180.02562 * 9 8 7 11 11 N 1.46903 * 109.46626 * 270.02378 * 10 9 8 12 12 C 1.46906 * 110.99339 * 175.53780 * 11 10 9 13 13 H 1.08994 * 109.47491 * 325.93176 * 12 11 10 14 14 C 1.50698 * 109.46761 * 205.93335 * 12 11 10 15 15 H 1.08004 * 120.00650 * 0.02562 * 14 12 11 16 16 C 1.37885 * 119.99931 * 179.97438 * 14 12 11 17 17 N 1.31508 * 120.00023 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 119.99815 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46839 * 90.00615 * 18 16 14 20 20 H 1.48501 * 109.47185 * 209.99957 * 18 16 14 21 21 H 1.48490 * 109.47601 * 330.00388 * 18 16 14 22 22 C 1.52994 * 109.46969 * 85.93680 * 12 11 10 23 23 C 1.52998 * 109.47493 * 59.82190 * 22 12 11 24 24 N 1.30926 * 107.11398 * 0.26412 * 9 8 7 25 25 H 1.08993 * 109.47166 * 299.99923 * 1 2 3 26 26 H 1.08997 * 109.46736 * 60.00399 * 1 2 3 27 27 H 1.09005 * 109.46737 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46754 * 239.99772 * 2 1 3 29 29 H 1.09002 * 109.47166 * 120.00179 * 2 1 3 30 30 H 1.08994 * 109.46817 * 150.03184 * 10 9 8 31 31 H 1.08994 * 109.47309 * 30.02634 * 10 9 8 32 32 H 1.00898 * 111.00134 * 51.59168 * 11 10 9 33 33 H 0.96995 * 120.00389 * 179.97438 * 17 16 14 34 34 H 1.09002 * 109.47401 * 299.82062 * 22 12 11 35 35 H 1.09006 * 109.47261 * 179.82592 * 22 12 11 36 36 H 1.09005 * 109.47040 * 55.59366 * 23 22 12 37 37 H 1.08996 * 109.47354 * 295.59629 * 23 22 12 38 38 H 1.08998 * 109.47266 * 175.58754 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3488 1.5453 0.0005 5 8 4.0884 0.5826 0.0005 6 6 3.9159 2.9163 0.0000 7 7 3.2406 4.0351 -0.0015 8 8 4.0001 4.9807 -0.0020 9 6 5.2661 4.5508 -0.0004 10 6 6.5035 5.4110 0.0001 11 7 6.9066 5.6897 -1.3848 12 6 8.0483 6.6133 -1.4249 13 1 7.9722 7.3212 -0.5997 14 6 8.0420 7.3631 -2.7321 15 1 7.2672 7.1730 -3.4601 16 6 9.0250 8.2927 -2.9983 17 7 9.9682 8.5247 -2.1118 18 14 9.0176 9.2216 -4.6190 19 1 8.2254 10.4688 -4.4710 20 1 10.4116 9.5631 -5.0002 21 1 8.4100 8.3715 -5.6741 22 6 9.3505 5.8202 -1.2981 23 6 9.4552 4.8234 -2.4541 24 7 5.2286 3.2421 -0.0045 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 7.3094 4.8878 0.5147 31 1 6.2935 6.3493 0.5133 32 1 6.1316 6.0494 -1.9215 33 1 10.6598 9.1783 -2.2991 34 1 9.3564 5.2803 -0.3512 35 1 10.1978 6.5051 -1.3310 36 1 9.3707 5.3557 -3.4016 37 1 8.6520 4.0908 -2.3762 38 1 10.4176 4.3138 -2.4084 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563368045.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:29 Heat of formation + Delta-G solvation = -31.828359 kcal Electronic energy + Delta-G solvation = -21777.677125 eV Core-core repulsion = 18237.370729 eV Total energy + Delta-G solvation = -3540.306396 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.03919 -41.75834 -38.40289 -38.15191 -37.01418 -35.27523 -33.73455 -32.75014 -32.17351 -28.98479 -27.66932 -26.74777 -25.01315 -24.54960 -23.86763 -22.43049 -21.00729 -19.65056 -19.50144 -18.84151 -18.40186 -17.83865 -17.69250 -16.97743 -16.28640 -15.63323 -15.37567 -15.29298 -15.02634 -14.77958 -14.36609 -13.86874 -13.73320 -13.60902 -13.34813 -13.21121 -13.03034 -12.78627 -12.70437 -12.66496 -12.50281 -12.37351 -12.31302 -11.99728 -11.71768 -11.64593 -11.48256 -11.25861 -10.75455 -10.49078 -9.13971 -8.06169 -6.16603 -0.63372 0.21004 0.71077 1.38821 1.44113 1.45632 1.49469 1.57084 2.43582 2.47085 2.74130 3.24186 3.54259 3.66840 3.92695 3.93300 4.04702 4.23472 4.27521 4.53260 4.56696 4.64701 4.73077 4.85534 4.86370 4.92017 5.01020 5.23533 5.33072 5.42909 5.58216 5.75485 5.84544 5.91274 6.12044 6.32358 6.38864 6.65577 6.70579 6.99595 7.51431 8.98581 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.031523 B = 0.003089 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.015018 B = 9063.064182 C = 9267.176689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.051 3.949 3 O -0.341 6.341 4 C 0.572 3.428 5 O -0.487 6.487 6 C 0.128 3.872 7 N -0.326 5.326 8 O 0.114 5.886 9 C 0.224 3.776 10 C 0.151 3.849 11 N -0.680 5.680 12 C 0.226 3.774 13 H -0.007 1.007 14 C -0.523 4.523 15 H 0.058 0.942 16 C 0.023 3.977 17 N -0.911 5.911 18 Si 0.948 3.052 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.272 1.272 22 C -0.103 4.103 23 C -0.111 4.111 24 N -0.450 5.450 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.110 0.890 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.121 0.879 31 H 0.093 0.907 32 H 0.340 0.660 33 H 0.261 0.739 34 H 0.031 0.969 35 H 0.062 0.938 36 H 0.035 0.965 37 H 0.047 0.953 38 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.439 -11.321 5.893 20.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.021 4.021 3 O -0.256 6.256 4 C 0.411 3.589 5 O -0.371 6.371 6 C -0.143 4.143 7 N -0.028 5.028 8 O 0.041 5.959 9 C 0.003 3.997 10 C 0.020 3.980 11 N -0.314 5.314 12 C 0.119 3.881 13 H 0.011 0.989 14 C -0.562 4.562 15 H 0.076 0.924 16 C -0.177 4.177 17 N -0.551 5.551 18 Si 0.775 3.225 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.197 1.197 22 C -0.142 4.142 23 C -0.168 4.168 24 N -0.185 5.185 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.129 0.871 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.139 0.861 31 H 0.111 0.889 32 H 0.158 0.842 33 H 0.070 0.930 34 H 0.049 0.951 35 H 0.080 0.920 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -15.455 -12.653 5.873 20.819 hybrid contribution 0.086 1.444 -0.640 1.582 sum -15.369 -11.209 5.232 19.728 Atomic orbital electron populations 1.21870 0.89637 1.04958 1.03872 1.23658 0.97490 0.77063 1.03890 1.86583 1.20137 1.35862 1.83022 1.18632 0.82004 0.84715 0.73539 1.90887 1.61193 1.40494 1.44545 1.24313 0.87374 0.94155 1.08452 1.75021 1.17048 0.95474 1.15306 1.85357 1.15936 1.30967 1.63620 1.29231 0.88333 0.89117 0.93019 1.20735 0.86600 0.96401 0.94215 1.60736 1.10730 1.51569 1.08385 1.18997 0.86637 0.87295 0.95219 0.98921 1.21400 1.11290 1.20641 1.02868 0.92430 1.25487 0.95214 0.97640 0.99338 1.69973 1.14641 1.34579 1.35878 0.85706 0.76962 0.79013 0.80817 1.20308 1.21454 1.19716 1.21382 1.00088 0.96973 0.95750 1.21334 0.98514 0.98062 0.98930 1.72079 1.16113 1.11499 1.18776 0.91139 0.91341 0.87114 0.90134 0.89861 0.86085 0.88925 0.84167 0.92977 0.95078 0.91956 0.94612 0.93378 0.95161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.29 71.98 0.74 -0.68 16 2 C 0.05 0.82 6.19 71.98 0.45 1.26 16 3 O -0.34 -8.12 10.23 -55.49 -0.57 -8.68 16 4 C 0.57 16.75 7.99 70.52 0.56 17.32 16 5 O -0.49 -16.05 16.89 20.18 0.34 -15.71 16 6 C 0.13 4.00 8.04 137.30 1.10 5.10 16 7 N -0.33 -9.57 12.20 -59.36 -0.72 -10.29 16 8 O 0.11 3.15 11.29 74.33 0.84 3.99 16 9 C 0.22 6.48 7.96 88.36 0.70 7.18 16 10 C 0.15 4.33 6.16 85.56 0.53 4.86 16 11 N -0.68 -24.69 5.64 -499.47 -2.82 -27.51 16 12 C 0.23 9.98 2.30 44.17 0.10 10.08 16 13 H -0.01 -0.32 7.71 -2.39 -0.02 -0.34 16 14 C -0.52 -25.90 7.26 25.60 0.19 -25.71 16 15 H 0.06 2.83 7.60 -2.91 -0.02 2.81 16 16 C 0.02 1.18 5.30 84.66 0.45 1.63 16 17 N -0.91 -48.83 11.32 21.45 0.24 -48.59 16 18 Si 0.95 41.38 29.54 68.60 2.03 43.40 16 19 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 20 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 22 C -0.10 -4.58 5.59 30.59 0.17 -4.41 16 23 C -0.11 -4.70 9.52 71.98 0.69 -4.02 16 24 N -0.45 -14.89 11.57 -302.79 -3.50 -18.40 16 25 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.11 0.52 8.14 -2.38 -0.02 0.50 16 28 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.12 3.41 7.61 -2.39 -0.02 3.39 16 31 H 0.09 2.29 7.94 -2.39 -0.02 2.27 16 32 H 0.34 12.08 8.13 -89.70 -0.73 11.35 16 33 H 0.26 13.49 8.31 -92.71 -0.77 12.72 16 34 H 0.03 1.24 7.61 -2.39 -0.02 1.22 16 35 H 0.06 3.14 6.07 -2.38 -0.01 3.13 16 36 H 0.03 1.64 7.07 -2.38 -0.02 1.62 16 37 H 0.05 1.96 7.74 -2.39 -0.02 1.94 16 38 H 0.03 1.15 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -59.63 331.26 1.88 -57.75 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 0.36 Total: 11.43 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: 5.68 Total: 12.62 kcal Atomic # 7 Polarization: -97.99 SS G_CDS: -6.80 Total: -104.79 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: 0.61 Total: -20.41 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.40 kcal Total: -59.63 1.88 -57.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563368045.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.923 kcal (2) G-P(sol) polarization free energy of solvation -59.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds