Wall clock time and date at job start Tue Mar 31 2020 05:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46834 * 2 1 4 4 C 1.52996 * 109.47483 * 120.00183 * 2 1 3 5 5 C 1.53001 * 109.47413 * 295.00220 * 4 2 1 6 6 F 1.39895 * 109.47279 * 184.99478 * 5 4 2 7 7 F 1.39899 * 109.46959 * 64.99260 * 5 4 2 8 8 C 1.50702 * 109.47088 * 240.00528 * 2 1 3 9 9 O 1.21285 * 119.99904 * 240.00090 * 8 2 1 10 10 N 1.34780 * 120.00146 * 59.99766 * 8 2 1 11 11 C 1.39126 * 119.99942 * 175.81272 * 10 8 2 12 12 C 1.38643 * 120.28511 * 34.56119 * 11 10 8 13 13 C 1.38223 * 120.03377 * 179.97438 * 12 11 10 14 14 C 1.38868 * 120.61271 * 0.04092 * 13 12 11 15 15 C 1.36460 * 120.57733 * 359.97438 * 14 13 12 16 16 C 1.40735 * 119.94350 * 359.66505 * 15 14 13 17 17 C 1.41075 * 120.30091 * 180.34082 * 16 15 14 18 18 H 1.07997 * 120.00170 * 214.98487 * 17 16 15 19 19 C 1.39967 * 119.99740 * 34.98376 * 17 16 15 20 20 N 1.30849 * 120.00052 * 355.63749 * 19 17 16 21 21 Si 1.86799 * 119.99474 * 175.63558 * 19 17 16 22 22 H 1.48498 * 109.47603 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46757 * 120.00349 * 21 19 17 24 24 H 1.48500 * 109.47206 * 239.99669 * 21 19 17 25 25 H 1.08999 * 109.46834 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46641 * 299.99787 * 1 2 3 27 27 H 1.08999 * 109.46795 * 59.99654 * 1 2 3 28 28 H 1.09000 * 109.47366 * 174.99931 * 4 2 1 29 29 H 1.09008 * 109.46629 * 54.99979 * 4 2 1 30 30 H 1.09004 * 109.46850 * 305.00386 * 5 4 2 31 31 H 0.96998 * 120.00030 * 355.80989 * 10 8 2 32 32 H 1.08001 * 119.98087 * 359.97438 * 12 11 10 33 33 H 1.07999 * 119.69292 * 180.02562 * 13 12 11 34 34 H 1.08003 * 119.70658 * 179.97438 * 14 13 12 35 35 H 1.08006 * 120.02543 * 179.97438 * 15 14 13 36 36 H 0.97003 * 119.99338 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6354 0.0688 2.4953 6 9 2.1977 -0.5279 3.6288 7 9 0.2414 0.0721 2.6130 8 6 2.0324 -0.7103 -1.2305 9 8 2.7296 -1.6964 -1.1193 10 7 1.7068 -0.2498 -2.4546 11 6 2.2407 -0.8524 -3.5893 12 6 2.4754 -2.2186 -3.6105 13 6 3.0056 -2.8120 -4.7408 14 6 3.3088 -2.0517 -5.8626 15 6 3.0881 -0.7050 -5.8688 16 6 2.5421 -0.0774 -4.7336 17 6 2.3042 1.3132 -4.7345 18 1 2.4383 1.8845 -3.8279 19 6 1.8944 1.9523 -5.9103 20 7 1.8143 1.2770 -7.0282 21 14 1.4618 3.7693 -5.8836 22 1 1.6340 4.2990 -4.5070 23 1 2.3574 4.5050 -6.8121 24 1 0.0509 3.9486 -6.3107 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 3.1264 -0.7995 1.2055 29 1 1.6055 -1.7199 1.2950 30 1 1.9950 1.0941 2.4081 31 1 1.1001 0.5018 -2.5445 32 1 2.2440 -2.8195 -2.7435 33 1 3.1858 -3.8768 -4.7515 34 1 3.7229 -2.5304 -6.7377 35 1 3.3276 -0.1222 -6.7460 36 1 1.5306 1.7201 -7.8432 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567289274.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:13 Heat of formation + Delta-G solvation = -147.898021 kcal Electronic energy + Delta-G solvation = -22011.177588 eV Core-core repulsion = 18322.457767 eV Total energy + Delta-G solvation = -3688.719821 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.92182 -47.94178 -41.34391 -39.13982 -35.96402 -35.49460 -35.42044 -31.49323 -30.72197 -29.54500 -27.13237 -25.73397 -23.94946 -22.97916 -22.05643 -20.67163 -19.26676 -18.82603 -18.38605 -17.95772 -17.74868 -16.94575 -16.68366 -16.22220 -15.97618 -15.35526 -15.12260 -14.88628 -14.61595 -14.51577 -14.24464 -14.18333 -13.91813 -13.59207 -13.39466 -13.03080 -12.82073 -12.73283 -12.60365 -12.23574 -12.12142 -12.09582 -11.90306 -11.75234 -11.56522 -11.07766 -10.89065 -10.45803 -9.23357 -8.79282 -8.43952 -6.35302 0.83457 1.06956 1.44581 1.53197 1.58368 1.82269 2.24971 2.31169 2.82332 3.02039 3.39308 3.44236 3.65016 3.70220 3.89263 4.09603 4.19171 4.38325 4.51351 4.62845 4.71580 4.76553 4.84069 4.95613 5.06600 5.13914 5.22627 5.32215 5.36478 5.45966 5.80106 5.88141 6.15411 6.18581 6.27316 6.65998 6.77486 6.97585 7.03439 7.41130 8.43760 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.017560 B = 0.004802 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.155609 B = 5829.137055 C = 7108.803638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.096 4.096 3 H 0.134 0.866 4 C -0.149 4.149 5 C 0.267 3.733 6 F -0.219 7.219 7 F -0.208 7.208 8 C 0.501 3.499 9 O -0.577 6.577 10 N -0.634 5.634 11 C 0.018 3.982 12 C -0.109 4.109 13 C -0.220 4.220 14 C -0.125 4.125 15 C -0.164 4.164 16 C 0.067 3.933 17 C -0.488 4.488 18 H 0.083 0.917 19 C 0.031 3.969 20 N -0.839 5.839 21 Si 0.986 3.014 22 H -0.250 1.250 23 H -0.274 1.274 24 H -0.270 1.270 25 H 0.049 0.951 26 H 0.106 0.894 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.154 0.846 31 H 0.413 0.587 32 H 0.109 0.891 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.405 4.283 12.707 13.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.117 4.117 3 H 0.152 0.848 4 C -0.188 4.188 5 C 0.214 3.786 6 F -0.200 7.200 7 F -0.189 7.189 8 C 0.290 3.710 9 O -0.457 6.457 10 N -0.277 5.277 11 C -0.076 4.076 12 C -0.129 4.129 13 C -0.240 4.240 14 C -0.144 4.144 15 C -0.184 4.184 16 C 0.064 3.936 17 C -0.519 4.519 18 H 0.101 0.899 19 C -0.181 4.181 20 N -0.467 5.467 21 Si 0.808 3.192 22 H -0.173 1.173 23 H -0.199 1.199 24 H -0.195 1.195 25 H 0.068 0.932 26 H 0.125 0.875 27 H 0.087 0.913 28 H 0.116 0.884 29 H 0.095 0.905 30 H 0.171 0.829 31 H 0.251 0.749 32 H 0.126 0.874 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.011 3.633 12.615 13.468 hybrid contribution -0.347 0.463 -0.591 0.827 sum -3.358 4.096 12.024 13.139 Atomic orbital electron populations 1.22209 0.91183 1.03136 1.05270 1.21195 0.98986 1.01622 0.89898 0.84827 1.22403 1.04192 1.00327 0.91837 1.22182 0.74161 1.00214 0.82088 1.92961 1.85056 1.86964 1.55042 1.92882 1.32226 1.97773 1.96016 1.21293 0.79709 0.84716 0.85274 1.90635 1.40189 1.27803 1.87104 1.42898 1.46132 1.34882 1.03785 1.17993 1.08328 0.91318 0.90010 1.20830 1.01181 0.93256 0.97658 1.20684 1.09839 0.99056 0.94425 1.20774 1.01348 0.94606 0.97632 1.21206 1.02835 0.94284 1.00085 1.17816 0.90571 0.94133 0.91104 1.19553 1.42462 0.92652 0.97198 0.89889 1.26749 0.92870 1.04505 0.94013 1.69862 1.36612 1.39332 1.00855 0.85078 0.78275 0.76059 0.79826 1.17296 1.19950 1.19503 0.93224 0.87532 0.91293 0.88412 0.90520 0.82940 0.74950 0.87356 0.86833 0.87108 0.86682 0.90569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.19 8.54 71.98 0.61 -2.57 16 2 C -0.10 -2.15 2.73 -11.54 -0.03 -2.18 16 3 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 4 C -0.15 -3.17 4.36 30.59 0.13 -3.04 16 5 C 0.27 4.35 5.25 71.98 0.38 4.73 16 6 F -0.22 -4.58 17.34 44.97 0.78 -3.80 16 7 F -0.21 -3.87 14.15 44.97 0.64 -3.23 16 8 C 0.50 17.46 6.99 87.66 0.61 18.07 16 9 O -0.58 -24.54 13.33 -3.05 -0.04 -24.58 16 10 N -0.63 -24.43 4.88 -302.28 -1.47 -25.90 16 11 C 0.02 0.87 6.34 38.87 0.25 1.11 16 12 C -0.11 -5.23 8.69 22.36 0.19 -5.04 16 13 C -0.22 -10.18 10.04 22.42 0.22 -9.96 16 14 C -0.12 -5.92 9.97 22.01 0.22 -5.70 16 15 C -0.16 -8.54 8.61 22.46 0.19 -8.34 16 16 C 0.07 3.47 5.56 -21.18 -0.12 3.36 16 17 C -0.49 -23.87 8.22 23.39 0.19 -23.68 16 18 H 0.08 3.78 7.63 -2.91 -0.02 3.76 16 19 C 0.03 1.47 5.42 85.26 0.46 1.94 16 20 N -0.84 -41.94 10.62 21.83 0.23 -41.71 16 21 Si 0.99 35.31 29.56 68.60 2.03 37.33 16 22 H -0.25 -8.35 7.11 99.48 0.71 -7.64 16 23 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 24 H -0.27 -9.43 7.11 99.48 0.71 -8.72 16 25 H 0.05 1.11 8.14 -2.39 -0.02 1.10 16 26 H 0.11 1.71 5.43 -2.39 -0.01 1.70 16 27 H 0.07 1.32 7.48 -2.39 -0.02 1.30 16 28 H 0.10 2.22 7.95 -2.39 -0.02 2.20 16 29 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 30 H 0.15 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.41 14.01 7.40 -92.71 -0.69 13.32 16 32 H 0.11 5.16 6.19 -2.91 -0.02 5.14 16 33 H 0.11 4.60 8.06 -2.91 -0.02 4.57 16 34 H 0.11 4.61 8.06 -2.91 -0.02 4.59 16 35 H 0.12 6.25 6.16 -2.91 -0.02 6.23 16 36 H 0.28 12.94 8.30 -92.71 -0.77 12.17 16 Total: -1.00 -63.10 307.15 5.92 -57.18 By element: Atomic # 1 Polarization: 35.57 SS G_CDS: 0.43 Total: 36.00 kcal Atomic # 6 Polarization: -34.63 SS G_CDS: 3.32 Total: -31.31 kcal Atomic # 7 Polarization: -66.37 SS G_CDS: -1.24 Total: -67.61 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.04 Total: -24.58 kcal Atomic # 9 Polarization: -8.44 SS G_CDS: 1.42 Total: -7.03 kcal Atomic # 14 Polarization: 35.31 SS G_CDS: 2.03 Total: 37.33 kcal Total: -63.10 5.92 -57.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567289274.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.714 kcal (2) G-P(sol) polarization free energy of solvation -63.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds