Wall clock time and date at job start Tue Mar 31 2020 06:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48500 * 109.47179 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47254 * 300.00663 * 3 2 1 6 6 H 1.48505 * 109.46839 * 60.00014 * 3 2 1 7 7 C 1.37868 * 120.00339 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00407 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00021 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47182 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46878 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00267 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99952 * 179.97438 * 11 10 9 14 14 C 1.46278 * 122.56195 * 7.72810 * 13 11 10 15 15 C 1.55445 * 109.53726 * 210.60492 * 14 13 11 16 16 S 1.84310 * 99.78672 * 319.84476 * 15 14 13 17 17 C 1.46569 * 122.56744 * 187.74854 * 13 11 10 18 18 C 1.52441 * 110.77007 * 294.31577 * 17 13 11 19 19 C 1.53088 * 109.56480 * 64.73801 * 18 17 13 20 20 C 1.53010 * 109.42006 * 59.09582 * 19 18 17 21 21 C 1.53007 * 109.53557 * 299.54078 * 20 19 18 22 22 C 1.52459 * 110.73919 * 57.66540 * 17 13 11 23 23 H 0.96994 * 120.00174 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.46906 * 59.99618 * 9 7 2 25 25 H 1.09006 * 109.46526 * 300.00089 * 9 7 2 26 26 H 1.09003 * 109.46956 * 60.00063 * 10 9 7 27 27 H 1.08996 * 109.47019 * 299.99882 * 10 9 7 28 28 H 1.09003 * 109.46777 * 330.63500 * 14 13 11 29 29 H 1.08997 * 109.47150 * 90.62095 * 14 13 11 30 30 H 1.09004 * 111.33781 * 202.20704 * 15 14 13 31 31 H 1.08999 * 111.34196 * 77.48937 * 15 14 13 32 32 H 1.08998 * 109.45691 * 184.76818 * 18 17 13 33 33 H 1.09004 * 109.45531 * 304.71040 * 18 17 13 34 34 H 1.09002 * 109.48070 * 299.11635 * 19 18 17 35 35 H 1.08999 * 109.48466 * 179.07764 * 19 18 17 36 36 H 1.09004 * 109.45735 * 179.52372 * 20 19 18 37 37 H 1.08997 * 109.45048 * 59.55967 * 20 19 18 38 38 H 1.09003 * 109.48099 * 300.49488 * 21 20 19 39 39 H 1.08996 * 109.49163 * 180.46173 * 21 20 19 40 40 H 1.08996 * 109.45334 * 55.28429 * 22 17 13 41 41 H 1.08994 * 109.45891 * 175.25602 * 22 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0847 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4920 -4.9671 0.0001 12 8 0.2792 -4.9672 0.0010 13 7 2.1659 -6.1343 -0.0003 14 6 3.6177 -6.2053 0.1644 15 6 4.1688 -7.4370 -0.6073 16 16 2.8519 -8.6660 -0.2173 17 6 1.5003 -7.4296 -0.1663 18 6 0.5857 -7.7230 1.0174 19 6 -0.5508 -6.6980 1.0535 20 6 -1.3413 -6.7686 -0.2547 21 6 -0.4153 -6.4479 -1.4299 22 6 0.7213 -7.4724 -1.4761 23 1 -0.4850 0.8400 0.0004 24 1 0.6242 -2.5566 -0.8902 25 1 0.6249 -2.5570 0.8898 26 1 2.8721 -3.6042 0.8895 27 1 2.8721 -3.6042 -0.8905 28 1 4.0728 -5.2965 -0.2294 29 1 3.8589 -6.3030 1.2229 30 1 5.1350 -7.7522 -0.2131 31 1 4.2247 -7.2416 -1.6782 32 1 0.1682 -8.7245 0.9142 33 1 1.1587 -7.6625 1.9427 34 1 -0.1346 -5.6977 1.1731 35 1 -1.2131 -6.9188 1.8906 36 1 -2.1559 -6.0448 -0.2263 37 1 -1.7505 -7.7713 -0.3779 38 1 0.0008 -5.4485 -1.3026 39 1 -0.9809 -6.4904 -2.3606 40 1 1.3898 -7.2359 -2.3039 41 1 0.3054 -8.4697 -1.6188 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571700482.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:27 Heat of formation + Delta-G solvation = 33.555784 kcal Electronic energy + Delta-G solvation = -21733.917168 eV Core-core repulsion = 18742.739255 eV Total energy + Delta-G solvation = -2991.177913 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.26675 -36.87663 -36.16876 -33.48007 -31.13022 -30.91756 -30.69353 -29.15971 -25.84499 -23.50197 -23.13542 -22.56528 -21.45294 -19.90148 -17.87050 -17.53411 -16.98605 -16.65068 -16.24840 -15.27138 -14.96722 -14.48001 -14.32970 -13.65187 -13.56730 -13.24327 -13.18622 -12.66360 -12.45593 -12.39654 -12.29710 -11.95101 -11.88910 -11.69643 -11.25628 -11.03823 -10.69885 -10.57790 -10.40636 -10.25579 -10.03416 -9.73051 -9.71556 -9.51704 -9.14629 -8.43661 -8.37988 -7.96332 -7.80281 -6.02035 -4.06338 1.54590 1.96059 2.78303 2.95632 3.28981 3.36880 3.39350 4.26879 4.42409 4.71294 4.77038 4.83428 5.09087 5.16607 5.33711 5.35820 5.37905 5.50804 5.55783 5.57009 5.73549 5.77427 5.80993 5.84897 6.07624 6.11042 6.14758 6.21240 6.42644 6.54957 6.60243 6.66780 6.77234 7.06649 7.30928 7.52683 7.67116 7.77015 7.98638 8.31863 8.54196 9.01380 9.57927 11.08763 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.023920 B = 0.004983 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.282645 B = 5617.479058 C = 6408.905731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.036 3.964 10 C -0.123 4.123 11 C 0.477 3.523 12 O -0.446 6.446 13 N -0.615 5.615 14 C 0.099 3.901 15 C -0.076 4.076 16 S -0.297 6.297 17 C 0.231 3.769 18 C -0.103 4.103 19 C -0.160 4.160 20 C -0.088 4.088 21 C -0.170 4.170 22 C -0.105 4.105 23 H 0.261 0.739 24 H 0.024 0.976 25 H 0.025 0.975 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.119 0.881 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.147 0.853 35 H 0.039 0.961 36 H 0.058 0.942 37 H 0.034 0.966 38 H 0.151 0.849 39 H 0.039 0.961 40 H 0.062 0.938 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.181 -15.780 -0.589 16.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.163 4.163 11 C 0.272 3.728 12 O -0.325 6.325 13 N -0.352 5.352 14 C -0.026 4.026 15 C -0.225 4.225 16 S -0.065 6.065 17 C 0.037 3.963 18 C -0.143 4.143 19 C -0.197 4.197 20 C -0.125 4.125 21 C -0.207 4.207 22 C -0.145 4.145 23 H 0.070 0.930 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.118 0.882 29 H 0.096 0.904 30 H 0.137 0.863 31 H 0.116 0.884 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.162 0.838 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.053 0.947 38 H 0.166 0.834 39 H 0.058 0.942 40 H 0.081 0.919 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.484 -16.915 -0.419 17.787 hybrid contribution 0.507 1.614 -0.254 1.711 sum 5.991 -15.301 -0.673 16.446 Atomic orbital electron populations 1.69991 1.06017 1.26546 1.50164 1.24999 0.94803 0.99196 0.95230 0.86562 0.80020 0.83910 0.77628 1.19772 1.21016 1.21003 1.21216 0.92929 0.90948 1.51438 0.92636 1.18940 0.93153 0.89382 0.98630 1.21905 1.00739 0.91370 1.02309 1.21235 0.88776 0.84756 0.78021 1.90205 1.14182 1.86716 1.41388 1.48460 1.06515 1.04976 1.75253 1.22192 0.80766 0.98849 1.00743 1.24709 0.99324 0.94359 1.04141 1.88124 1.07024 1.17885 1.93480 1.22901 0.91551 0.82553 0.99339 1.21776 0.96766 1.00001 0.95759 1.23151 0.96066 1.03857 0.96596 1.21135 0.97657 0.98742 0.94992 1.23381 0.96239 1.04345 0.96728 1.21955 0.97769 1.00698 0.94080 0.92968 0.95733 0.95692 0.90349 0.90307 0.88151 0.90394 0.86312 0.88364 0.91783 0.91461 0.83757 0.94202 0.92368 0.94700 0.83369 0.94197 0.91884 0.91438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.33 13.29 55.43 0.74 -25.60 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.53 -14.17 9.11 -34.44 -0.31 -14.49 16 8 H 0.06 1.42 7.74 -52.48 -0.41 1.01 16 9 C 0.04 0.90 4.26 -27.88 -0.12 0.78 16 10 C -0.12 -2.25 4.18 -27.88 -0.12 -2.37 16 11 C 0.48 8.03 6.25 -10.98 -0.07 7.96 16 12 O -0.45 -8.41 6.35 5.56 0.04 -8.38 16 13 N -0.61 -8.49 2.79 -161.12 -0.45 -8.94 16 14 C 0.10 1.05 6.31 -2.86 -0.02 1.03 16 15 C -0.08 -0.70 7.72 38.46 0.30 -0.40 16 16 S -0.30 -3.62 22.09 -107.50 -2.37 -5.99 16 17 C 0.23 3.15 0.98 -68.46 -0.07 3.08 16 18 C -0.10 -1.44 4.96 -26.97 -0.13 -1.58 16 19 C -0.16 -2.50 5.52 -26.68 -0.15 -2.64 16 20 C -0.09 -1.37 5.37 -26.72 -0.14 -1.51 16 21 C -0.17 -2.69 5.50 -26.68 -0.15 -2.84 16 22 C -0.10 -1.47 4.92 -26.96 -0.13 -1.60 16 23 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 24 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 25 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 26 H 0.08 1.33 8.09 -51.93 -0.42 0.91 16 27 H 0.08 1.34 7.81 -51.93 -0.41 0.93 16 28 H 0.10 0.97 6.76 -51.93 -0.35 0.61 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.12 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.15 2.64 3.83 18.65 0.07 2.72 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.15 2.75 3.55 18.34 0.07 2.82 16 39 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 317.77 15.07 4.79 4.79 Total: -1.00 -29.49 317.77 -9.56 -39.05 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -6.07 Total: 2.10 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -1.21 Total: -13.01 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: 0.29 Total: -34.53 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.04 Total: -8.38 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -2.37 Total: -5.99 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.49 -9.56 -39.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571700482.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.608 kcal (2) G-P(sol) polarization free energy of solvation -29.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds