Wall clock time and date at job start Tue Mar 31 2020 05:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86799 * 120.00161 * 2 1 4 4 H 1.48500 * 109.47448 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47145 * 300.00160 * 3 2 1 6 6 H 1.48502 * 109.47071 * 59.99654 * 3 2 1 7 7 C 1.38801 * 120.00093 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00247 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99807 * 0.02562 * 7 2 1 10 10 C 1.81006 * 99.99746 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46981 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47424 * 180.02562 * 11 10 9 13 13 N 1.46897 * 109.47525 * 179.97438 * 12 11 10 14 14 C 1.46920 * 110.99810 * 51.34521 * 13 12 11 15 15 C 1.53231 * 109.54740 * 187.31704 * 14 13 12 16 16 C 1.51400 * 108.54858 * 304.47690 * 15 14 13 17 17 O 1.20762 * 121.17170 * 230.61058 * 16 15 14 18 18 C 1.51592 * 117.66140 * 50.63875 * 16 15 14 19 19 C 1.46489 * 111.00196 * 175.86486 * 13 12 11 20 20 C 1.53397 * 113.63687 * 305.28726 * 19 13 12 21 21 C 1.53860 * 87.06247 * 139.99701 * 20 19 13 22 22 C 1.53376 * 113.69435 * 43.31111 * 19 13 12 23 23 H 0.97003 * 119.99750 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.47338 * 60.00333 * 10 9 7 25 25 H 1.08996 * 109.46836 * 299.99828 * 10 9 7 26 26 H 1.09005 * 109.47298 * 59.99586 * 11 10 9 27 27 H 1.08999 * 109.46777 * 300.00238 * 11 10 9 28 28 H 1.09005 * 109.47223 * 59.99539 * 12 11 10 29 29 H 1.09004 * 109.46894 * 299.99967 * 12 11 10 30 30 H 1.08996 * 109.45928 * 307.34148 * 14 13 12 31 31 H 1.09005 * 109.46016 * 67.31384 * 14 13 12 32 32 H 1.09002 * 109.62188 * 64.19569 * 15 14 13 33 33 H 1.09003 * 109.62312 * 184.75603 * 15 14 13 34 34 H 1.09004 * 109.76477 * 193.27175 * 18 16 15 35 35 H 1.08992 * 109.76990 * 72.49088 * 18 16 15 36 36 H 1.09003 * 113.63377 * 254.55664 * 20 19 13 37 37 H 1.08999 * 113.63682 * 25.43758 * 20 19 13 38 38 H 1.08995 * 113.60292 * 89.46263 * 21 20 19 39 39 H 1.08996 * 113.60177 * 220.33794 * 21 20 19 40 40 H 1.09003 * 113.63627 * 334.53514 * 22 19 13 41 41 H 1.08997 * 113.63372 * 105.40748 * 22 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3464 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9794 -5.3243 -0.0001 12 6 3.1513 -6.3078 0.0005 13 7 2.6362 -7.6835 0.0005 14 6 1.6497 -7.8762 -1.0710 15 6 1.0021 -9.2577 -0.9292 16 6 2.0964 -10.3039 -0.9195 17 8 2.0478 -11.2660 -1.6478 18 6 3.2549 -10.1017 0.0370 19 6 3.7296 -8.6535 -0.0975 20 6 4.6491 -8.4239 -1.3036 21 6 5.8242 -8.7741 -0.3741 22 6 4.9309 -8.3204 0.7960 23 1 -0.4850 0.8401 -0.0004 24 1 3.1245 -3.7314 0.8905 25 1 3.1245 -3.7313 -0.8894 26 1 1.3709 -5.4841 -0.8903 27 1 1.3705 -5.4846 0.8896 28 1 3.7594 -6.1478 0.8910 29 1 3.7606 -6.1475 -0.8890 30 1 0.8816 -7.1061 -1.0002 31 1 2.1463 -7.8060 -2.0388 32 1 0.4419 -9.3052 0.0047 33 1 0.3323 -9.4361 -1.7705 34 1 4.0676 -10.7814 -0.2195 35 1 2.9260 -10.2885 1.0591 36 1 4.5004 -9.1426 -2.1095 37 1 4.6615 -7.3917 -1.6535 38 1 6.0629 -9.8373 -0.3541 39 1 6.7016 -8.1450 -0.5239 40 1 5.0223 -7.2593 1.0277 41 1 5.0080 -8.9548 1.6789 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575811779.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:21 Heat of formation + Delta-G solvation = -21.122030 kcal Electronic energy + Delta-G solvation = -20268.568285 eV Core-core repulsion = 17275.019364 eV Total energy + Delta-G solvation = -2993.548921 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.24662 -38.92142 -36.21630 -33.59968 -32.44669 -30.74804 -29.80629 -26.18448 -25.84531 -25.13265 -24.29217 -22.70319 -20.81798 -19.96183 -18.00326 -17.53974 -16.75482 -16.16211 -15.67887 -15.58598 -14.95843 -14.86852 -14.81350 -14.40040 -14.05323 -13.84806 -13.24500 -13.17483 -12.98760 -12.46237 -12.11435 -11.84323 -11.79224 -11.71199 -11.47007 -11.29193 -11.14387 -11.08486 -10.82011 -10.77602 -10.63260 -10.53688 -10.33363 -9.58865 -9.52077 -9.08280 -8.34413 -8.32223 -6.54789 -6.24759 -3.94989 1.70696 3.19596 3.20102 3.28544 3.45213 3.69284 3.81362 4.20468 4.29144 4.32469 4.34751 4.54625 4.70424 4.85081 4.96754 5.05028 5.11636 5.17004 5.23903 5.28922 5.38899 5.46802 5.47486 5.52826 5.61441 5.62115 5.66113 5.70100 5.74653 5.79467 5.86668 5.94296 6.06152 6.14686 6.27960 6.53633 6.68474 6.91872 6.98084 7.26433 7.59135 8.35052 9.21880 10.83455 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.030624 B = 0.003283 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.092026 B = 8527.072590 C = 9179.965724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.071 3.929 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.516 4.516 8 H 0.073 0.927 9 S -0.132 6.132 10 C -0.112 4.112 11 C -0.100 4.100 12 C 0.056 3.944 13 N -0.524 5.524 14 C 0.053 3.947 15 C -0.166 4.166 16 C 0.364 3.636 17 O -0.462 6.462 18 C -0.139 4.139 19 C 0.098 3.902 20 C -0.178 4.178 21 C -0.138 4.138 22 C -0.131 4.131 23 H 0.267 0.733 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.039 0.961 30 H 0.101 0.899 31 H 0.039 0.961 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.095 0.905 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.853 -18.658 0.381 20.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.744 3.256 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.664 4.664 8 H 0.091 0.909 9 S 0.096 5.904 10 C -0.262 4.262 11 C -0.139 4.139 12 C -0.072 4.072 13 N -0.247 5.247 14 C -0.074 4.074 15 C -0.204 4.204 16 C 0.240 3.760 17 O -0.336 6.336 18 C -0.177 4.177 19 C 0.007 3.993 20 C -0.217 4.217 21 C -0.176 4.176 22 C -0.169 4.169 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.057 0.943 30 H 0.119 0.881 31 H 0.057 0.943 32 H 0.127 0.873 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.128 0.872 36 H 0.084 0.916 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.113 0.887 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.285 -19.313 0.440 20.314 hybrid contribution 2.273 1.547 -0.714 2.841 sum 8.558 -17.766 -0.274 19.722 Atomic orbital electron populations 1.70033 1.05913 1.27223 1.47330 1.25016 0.95079 0.99097 0.94610 0.86118 0.79649 0.81887 0.77899 1.19616 1.20580 1.20555 1.22728 0.94532 0.90776 1.58378 0.90932 1.84624 1.09483 0.99453 1.96848 1.23221 1.02914 0.97274 1.02761 1.21424 0.97011 0.92220 1.03211 1.22328 0.97619 0.86044 1.01195 1.61728 1.13639 1.03520 1.45817 1.22152 0.96139 0.96288 0.92841 1.22384 0.98017 0.94646 1.05342 1.24973 0.87244 0.84179 0.79590 1.90406 1.76972 1.29781 1.36449 1.22136 0.98255 0.95692 1.01666 1.22024 0.89450 0.91323 0.96506 1.23636 0.97622 1.02682 0.97747 1.22791 0.97015 1.01384 0.96417 1.23219 0.93655 1.02904 0.97112 0.92355 0.92065 0.92370 0.91396 0.90561 0.90019 0.94299 0.88074 0.94256 0.87347 0.88942 0.88821 0.87216 0.91618 0.89122 0.90126 0.91066 0.88675 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.73 13.22 55.49 0.73 -24.99 16 2 C 0.07 1.99 5.49 -17.43 -0.10 1.90 16 3 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.60 9.50 30.94 0.29 -14.31 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.59 16 9 S -0.13 -3.38 21.44 -107.50 -2.30 -5.68 16 10 C -0.11 -2.16 5.67 37.16 0.21 -1.95 16 11 C -0.10 -1.50 4.70 -26.73 -0.13 -1.63 16 12 C 0.06 0.68 4.23 -3.83 -0.02 0.66 16 13 N -0.52 -5.61 4.71 -218.66 -1.03 -6.64 16 14 C 0.05 0.56 4.98 -3.69 -0.02 0.54 16 15 C -0.17 -1.56 6.30 -27.42 -0.17 -1.73 16 16 C 0.36 3.87 6.76 -28.25 -0.19 3.68 16 17 O -0.46 -6.36 17.91 6.00 0.11 -6.26 16 18 C -0.14 -1.21 5.38 -27.44 -0.15 -1.36 16 19 C 0.10 0.91 0.93 -131.43 -0.12 0.79 16 20 C -0.18 -1.67 6.30 -26.08 -0.16 -1.84 16 21 C -0.14 -1.10 7.75 -25.74 -0.20 -1.30 16 22 C -0.13 -1.11 7.03 -26.00 -0.18 -1.29 16 23 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 24 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 25 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 26 H 0.07 1.02 6.16 -51.93 -0.32 0.70 16 27 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.08 0.96 6.19 -51.93 -0.32 0.64 16 29 H 0.04 0.47 5.94 -51.93 -0.31 0.16 16 30 H 0.10 1.10 5.75 -51.93 -0.30 0.80 16 31 H 0.04 0.43 7.57 -51.93 -0.39 0.03 16 32 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.09 0.76 7.35 -51.93 -0.38 0.38 16 35 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 37 H 0.09 0.92 5.97 -51.93 -0.31 0.61 16 38 H 0.08 0.57 7.65 -51.93 -0.40 0.17 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.86 5.68 -51.93 -0.29 0.57 16 41 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 LS Contribution 330.71 15.07 4.98 4.98 Total: -1.00 -31.40 330.71 -9.83 -41.23 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -6.37 Total: -1.10 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -0.93 Total: -17.84 kcal Atomic # 7 Polarization: -31.34 SS G_CDS: -0.30 Total: -31.63 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: 0.11 Total: -6.26 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -3.38 SS G_CDS: -2.30 Total: -5.68 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.40 -9.83 -41.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575811779.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.108 kcal (2) G-P(sol) polarization free energy of solvation -31.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds