Wall clock time and date at job start Tue Mar 31 2020 05:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.46978 * 2 1 4 4 C 1.46506 * 119.99772 * 270.35437 * 3 2 1 5 5 C 1.53005 * 109.46688 * 270.00104 * 4 3 2 6 6 F 1.39901 * 109.47384 * 299.99896 * 5 4 3 7 7 F 1.39899 * 109.47180 * 60.00331 * 5 4 3 8 8 C 1.34777 * 120.00466 * 90.35450 * 3 2 1 9 9 O 1.21604 * 120.00281 * 184.38157 * 8 3 2 10 10 C 1.47438 * 119.99661 * 4.38506 * 8 3 2 11 11 C 1.39223 * 120.28312 * 57.16977 * 10 8 3 12 12 C 1.38223 * 120.08918 * 180.27953 * 11 10 8 13 13 C 1.38827 * 120.67739 * 359.69194 * 12 11 10 14 14 C 1.37593 * 120.56685 * 0.02562 * 13 12 11 15 15 C 1.40698 * 119.88582 * 0.02562 * 14 13 12 16 16 C 1.40896 * 120.33186 * 179.97438 * 15 14 13 17 17 H 1.07995 * 119.99809 * 216.33111 * 16 15 14 18 18 C 1.40273 * 119.99600 * 36.32083 * 16 15 14 19 19 N 1.30630 * 120.00146 * 22.25189 * 18 16 15 20 20 Si 1.86801 * 120.00023 * 202.23913 * 18 16 15 21 21 H 1.48490 * 109.47291 * 180.02562 * 20 18 16 22 22 H 1.48495 * 109.47390 * 300.00835 * 20 18 16 23 23 H 1.48500 * 109.46587 * 60.00557 * 20 18 16 24 24 H 1.08997 * 109.47305 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46895 * 300.00143 * 1 2 3 26 26 H 1.08997 * 109.47092 * 60.00167 * 1 2 3 27 27 H 1.08996 * 109.47046 * 239.99391 * 2 1 3 28 28 H 1.09005 * 109.46704 * 119.99336 * 2 1 3 29 29 H 1.08995 * 109.47162 * 30.00035 * 4 3 2 30 30 H 1.08993 * 109.47052 * 150.00253 * 4 3 2 31 31 H 1.09005 * 109.46685 * 179.97438 * 5 4 3 32 32 H 1.08003 * 119.95642 * 359.97438 * 11 10 8 33 33 H 1.07997 * 119.65916 * 179.71671 * 12 11 10 34 34 H 1.07999 * 119.71577 * 180.02562 * 13 12 11 35 35 H 1.08006 * 120.05568 * 180.02562 * 14 13 12 36 36 H 0.96997 * 119.99845 * 5.59202 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2551 2.0744 -1.2688 5 6 3.6975 1.8348 -1.7193 6 9 4.5770 2.3259 -0.7485 7 9 3.9108 0.4628 -1.8907 8 6 2.2498 2.0142 1.1671 9 8 2.5784 3.1850 1.1691 10 6 2.1046 1.2871 2.4415 11 6 2.8410 0.1292 2.6769 12 6 2.6975 -0.5525 3.8708 13 6 1.8270 -0.0919 4.8493 14 6 1.0902 1.0526 4.6478 15 6 1.2169 1.7646 3.4409 16 6 0.4666 2.9373 3.2245 17 1 0.0840 3.1594 2.2394 18 6 0.2165 3.8162 4.2888 19 7 0.9960 3.8112 5.3370 20 14 -1.2312 4.9939 4.2070 21 1 -1.2763 5.8097 5.4470 22 1 -1.0759 5.8884 3.0319 23 1 -2.4920 4.2201 4.0769 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.5699 1.6918 -2.0252 30 1 2.0889 3.1433 -1.1353 31 1 3.8735 2.3502 -2.6636 32 1 3.5216 -0.2396 1.9238 33 1 3.2687 -1.4525 4.0443 34 1 1.7273 -0.6365 5.7765 35 1 0.4158 1.4037 5.4149 36 1 1.7934 3.2591 5.3458 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601436748.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:43 Heat of formation + Delta-G solvation = -127.373870 kcal Electronic energy + Delta-G solvation = -23148.192217 eV Core-core repulsion = 19460.362390 eV Total energy + Delta-G solvation = -3687.829827 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.72119 -46.72910 -39.41516 -37.18374 -35.38705 -33.87170 -31.47998 -30.05544 -29.50402 -28.34764 -25.25028 -23.55309 -23.17293 -21.43177 -21.04530 -18.90376 -17.76778 -17.46144 -17.17195 -16.35928 -16.12239 -15.49212 -14.93109 -14.55723 -14.10973 -13.71846 -13.67715 -13.46746 -13.30254 -13.09977 -12.62694 -12.48408 -12.31216 -12.25624 -12.16350 -11.91085 -11.53665 -11.25981 -11.13313 -10.98589 -10.79285 -10.63134 -10.40169 -10.10862 -9.56544 -9.03750 -8.84159 -8.28220 -7.72968 -7.63927 -7.19679 -4.50844 2.36200 2.70373 3.16814 3.25133 3.36127 3.39621 3.63675 4.02409 4.03002 4.38903 4.55230 4.61659 4.91419 5.27510 5.33829 5.38210 5.52127 5.63876 5.73677 5.88488 5.93869 6.01226 6.14699 6.22175 6.41533 6.54203 6.74484 6.94145 6.95573 7.24020 7.48345 7.58964 7.69719 7.79236 7.93009 8.13422 8.15878 8.62686 8.79535 9.07159 10.06144 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.017137 B = 0.006728 C = 0.005827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.531008 B = 4160.754689 C = 4804.001821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.103 3.897 3 N -0.621 5.621 4 C 0.068 3.932 5 C 0.243 3.757 6 F -0.195 7.195 7 F -0.209 7.209 8 C 0.590 3.410 9 O -0.526 6.526 10 C -0.244 4.244 11 C -0.052 4.052 12 C -0.251 4.251 13 C -0.077 4.077 14 C -0.201 4.201 15 C 0.131 3.869 16 C -0.501 4.501 17 H 0.074 0.926 18 C 0.041 3.959 19 N -0.791 5.791 20 Si 1.065 2.935 21 H -0.273 1.273 22 H -0.275 1.275 23 H -0.275 1.275 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.645 -5.374 -11.360 12.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.020 4.020 3 N -0.357 5.357 4 C -0.057 4.057 5 C 0.188 3.812 6 F -0.177 7.177 7 F -0.191 7.191 8 C 0.382 3.618 9 O -0.401 6.401 10 C -0.249 4.249 11 C -0.070 4.070 12 C -0.270 4.270 13 C -0.095 4.095 14 C -0.220 4.220 15 C 0.127 3.873 16 C -0.529 4.529 17 H 0.092 0.908 18 C -0.181 4.181 19 N -0.414 5.414 20 Si 0.889 3.111 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.200 1.200 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.112 0.888 29 H 0.117 0.883 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.123 0.877 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.227 -3.577 -10.398 11.064 hybrid contribution 1.038 -1.413 -0.933 1.986 sum -0.189 -4.989 -11.331 12.382 Atomic orbital electron populations 1.22155 0.96190 1.01685 1.02518 1.21705 0.94352 0.82375 1.03557 1.47993 1.68419 1.14712 1.04533 1.22415 0.92961 1.01840 0.88510 1.22560 0.90752 0.76541 0.91380 1.93044 1.71117 1.87246 1.66251 1.92942 1.95884 1.34208 1.96036 1.18515 0.74211 0.85956 0.83103 1.90690 1.46055 1.16383 1.86966 1.19405 1.07103 1.01436 0.96918 1.20608 0.96917 0.93265 0.96244 1.20258 1.07291 1.03119 0.96315 1.20739 0.95792 0.95995 0.97017 1.21166 1.04120 0.96975 0.99746 1.17383 0.88208 0.91962 0.89749 1.20436 1.29207 1.04693 0.98541 0.90789 1.27009 1.01295 0.98794 0.91049 1.70360 1.10367 1.31599 1.29032 0.83638 0.74369 0.75764 0.77368 1.19747 1.20068 1.20007 0.92054 0.91463 0.93241 0.91202 0.88770 0.88313 0.87166 0.87307 0.88778 0.88750 0.88821 0.87668 0.88847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.41 10.24 37.16 0.38 -2.03 16 2 C 0.10 1.59 5.75 -4.04 -0.02 1.57 16 3 N -0.62 -11.20 2.39 -174.95 -0.42 -11.61 16 4 C 0.07 0.96 5.73 -4.04 -0.02 0.93 16 5 C 0.24 3.23 5.60 37.16 0.21 3.44 16 6 F -0.20 -3.53 16.46 2.25 0.04 -3.49 16 7 F -0.21 -2.94 16.24 2.25 0.04 -2.91 16 8 C 0.59 13.70 5.83 -12.51 -0.07 13.62 16 9 O -0.53 -13.99 15.68 5.27 0.08 -13.91 16 10 C -0.24 -5.90 4.94 -104.37 -0.52 -6.42 16 11 C -0.05 -1.13 7.55 -39.22 -0.30 -1.42 16 12 C -0.25 -5.27 10.03 -39.37 -0.39 -5.66 16 13 C -0.08 -1.68 10.01 -39.60 -0.40 -2.08 16 14 C -0.20 -4.94 8.06 -38.89 -0.31 -5.25 16 15 C 0.13 3.40 5.07 -106.54 -0.54 2.86 16 16 C -0.50 -13.45 7.81 -37.81 -0.30 -13.74 16 17 H 0.07 2.02 7.60 -52.49 -0.40 1.62 16 18 C 0.04 1.06 4.97 -17.30 -0.09 0.97 16 19 N -0.79 -21.44 12.70 55.56 0.71 -20.74 16 20 Si 1.07 22.20 29.99 -169.99 -5.10 17.10 16 21 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 22 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 23 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.91 7.25 -51.93 -0.38 0.54 16 28 H 0.09 1.60 4.56 -51.93 -0.24 1.36 16 29 H 0.10 1.02 8.07 -51.93 -0.42 0.60 16 30 H 0.11 1.66 7.36 -51.93 -0.38 1.28 16 31 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.09 1.87 7.57 -52.48 -0.40 1.47 16 33 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 35 H 0.11 2.64 7.21 -52.48 -0.38 2.26 16 36 H 0.30 8.38 6.91 -40.82 -0.28 8.10 16 LS Contribution 311.58 15.07 4.70 4.70 Total: -1.00 -31.20 311.58 -6.53 -37.73 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -4.20 Total: 6.33 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -2.37 Total: -13.20 kcal Atomic # 7 Polarization: -32.64 SS G_CDS: 0.29 Total: -32.35 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: 0.08 Total: -13.91 kcal Atomic # 9 Polarization: -6.47 SS G_CDS: 0.07 Total: -6.40 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.10 Total: 17.10 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.20 -6.53 -37.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601436748.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.642 kcal (2) G-P(sol) polarization free energy of solvation -31.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds