Wall clock time and date at job start Tue Mar 31 2020 05:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36879 * 126.40207 * 2 1 4 4 Cl 1.73598 * 126.59741 * 359.96099 * 3 2 1 5 5 C 1.34792 * 106.79961 * 179.97438 * 3 2 1 6 6 N 1.34165 * 108.01790 * 359.74694 * 5 3 2 7 7 C 1.30470 * 109.26704 * 0.42470 * 6 5 3 8 8 C 1.50703 * 125.64209 * 179.83505 * 7 6 5 9 9 N 1.46899 * 109.47107 * 269.69256 * 8 7 6 10 10 C 1.46851 * 110.99898 * 45.79103 * 9 8 7 11 11 C 1.53039 * 109.52490 * 185.83779 * 10 9 8 12 12 C 1.53116 * 109.27694 * 300.82213 * 11 10 9 13 13 C 1.53121 * 109.16460 * 57.65281 * 12 11 10 14 14 H 1.09004 * 109.50186 * 62.28373 * 13 12 11 15 15 C 1.50694 * 109.50729 * 182.40230 * 13 12 11 16 16 H 1.08004 * 119.99708 * 119.80507 * 15 13 12 17 17 C 1.37877 * 120.00261 * 299.80519 * 15 13 12 18 18 N 1.31516 * 120.00264 * 180.02562 * 17 15 13 19 19 Si 1.86801 * 119.99656 * 359.97438 * 17 15 13 20 20 H 1.48498 * 109.46998 * 90.00359 * 19 17 15 21 21 H 1.48500 * 109.47002 * 209.99767 * 19 17 15 22 22 H 1.48496 * 109.47450 * 329.99969 * 19 17 15 23 23 C 1.46842 * 111.00041 * 169.99728 * 9 8 7 24 24 H 1.09006 * 109.47452 * 270.03112 * 1 2 3 25 25 H 1.09004 * 109.47159 * 30.02338 * 1 2 3 26 26 H 1.08993 * 109.47625 * 150.02396 * 1 2 3 27 27 H 1.08004 * 125.98638 * 179.97438 * 5 3 2 28 28 H 1.09002 * 109.47152 * 149.69344 * 8 7 6 29 29 H 1.09001 * 109.46980 * 29.69444 * 8 7 6 30 30 H 1.08996 * 109.46471 * 305.85679 * 10 9 8 31 31 H 1.09004 * 109.45929 * 65.82278 * 10 9 8 32 32 H 1.08992 * 109.50519 * 180.88071 * 11 10 9 33 33 H 1.09002 * 109.53120 * 60.77905 * 11 10 9 34 34 H 1.08999 * 109.52546 * 297.75036 * 12 11 10 35 35 H 1.09001 * 109.57643 * 177.58937 * 12 11 10 36 36 H 0.96999 * 119.99665 * 179.97438 * 18 17 15 37 37 H 1.08996 * 109.46789 * 294.18136 * 23 9 8 38 38 H 1.09002 * 109.46444 * 54.14824 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1017 0.0000 4 17 1.7697 2.7618 -0.0009 5 6 3.5471 0.6495 0.0006 6 7 3.5100 -0.6916 0.0066 7 6 2.2670 -1.0880 0.0006 8 6 1.8023 -2.5216 0.0008 9 7 1.6518 -2.9877 -1.3841 10 6 2.8107 -2.6004 -2.1987 11 6 2.5554 -2.9726 -3.6610 12 6 2.3168 -4.4815 -3.7643 13 6 1.1353 -4.8660 -2.8694 14 1 0.2342 -4.3627 -3.2201 15 6 0.9308 -6.3582 -2.9194 16 1 1.0048 -6.9439 -2.0151 17 6 0.6492 -6.9756 -4.1196 18 7 0.4703 -8.2778 -4.1633 19 14 0.5206 -5.9622 -5.6836 20 1 1.8560 -5.8732 -6.3270 21 1 -0.4359 -6.6106 -6.6163 22 1 0.0394 -4.5973 -5.3510 23 6 1.4317 -4.4388 -1.4300 24 1 -0.3634 0.0006 1.0277 25 1 -0.3634 0.8898 -0.5142 26 1 -0.3634 -0.8901 -0.5134 27 1 4.4381 1.2599 0.0003 28 1 0.8435 -2.5927 0.5143 29 1 2.5367 -3.1415 0.5150 30 1 2.9669 -1.5246 -2.1197 31 1 3.6974 -3.1232 -1.8403 32 1 3.4221 -2.6992 -4.2627 33 1 1.6770 -2.4395 -4.0247 34 1 3.2096 -5.0147 -3.4377 35 1 2.0921 -4.7459 -4.7976 36 1 0.2718 -8.7120 -5.0076 37 1 2.3249 -4.9530 -1.0753 38 1 0.5863 -4.6983 -0.7928 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700103612.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:02 Heat of formation + Delta-G solvation = 63.625810 kcal Electronic energy + Delta-G solvation = -20538.641238 eV Core-core repulsion = 17443.183210 eV Total energy + Delta-G solvation = -3095.458028 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.37688 -38.43849 -36.98411 -34.31153 -34.11546 -32.19174 -30.37944 -29.71047 -27.35618 -26.10458 -24.93010 -22.57684 -21.68491 -21.40235 -19.78330 -18.86524 -17.39620 -16.79530 -16.38358 -15.45234 -15.25743 -14.65801 -14.25089 -14.03474 -13.83032 -13.57094 -13.23084 -13.08758 -12.88176 -12.64786 -12.27654 -12.15072 -12.06700 -11.74992 -11.63628 -11.07100 -11.04429 -10.50264 -10.17327 -10.08767 -9.97454 -9.81492 -9.70117 -9.12965 -8.94386 -8.52869 -8.50050 -7.91489 -6.07596 -4.06943 1.41277 1.63984 2.73388 2.83676 3.29031 3.39677 3.42589 4.17111 4.42115 4.42857 4.55827 4.76956 4.92574 5.23260 5.24198 5.28731 5.39640 5.47658 5.61611 5.63891 5.84425 5.95403 6.05727 6.13919 6.28816 6.31077 6.33897 6.49730 6.59726 6.77435 6.80772 6.84868 7.17283 7.34505 7.44817 7.61366 7.81286 7.83666 8.50764 8.95401 9.55231 11.05562 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.033084 B = 0.003994 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.120570 B = 7008.026169 C = 7116.197767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.443 5.443 3 C 0.005 3.995 4 Cl -0.014 7.014 5 C 0.007 3.993 6 N -0.479 5.479 7 C 0.244 3.756 8 C 0.133 3.867 9 N -0.539 5.539 10 C 0.065 3.935 11 C -0.119 4.119 12 C -0.123 4.123 13 C 0.022 3.978 14 H 0.035 0.965 15 C -0.514 4.514 16 H 0.073 0.927 17 C 0.071 3.929 18 N -0.902 5.902 19 Si 0.888 3.112 20 H -0.280 1.280 21 H -0.299 1.299 22 H -0.264 1.264 23 C 0.077 3.923 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.105 0.895 27 H 0.178 0.822 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.035 0.965 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.046 0.954 36 H 0.263 0.737 37 H 0.032 0.968 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.300 19.832 8.690 21.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.127 5.127 3 C -0.136 4.136 4 Cl 0.014 6.986 5 C -0.143 4.143 6 N -0.198 5.198 7 C -0.018 4.018 8 C 0.004 3.996 9 N -0.265 5.265 10 C -0.063 4.063 11 C -0.156 4.156 12 C -0.160 4.160 13 C 0.003 3.997 14 H 0.053 0.947 15 C -0.553 4.553 16 H 0.091 0.909 17 C -0.130 4.130 18 N -0.540 5.540 19 Si 0.718 3.282 20 H -0.207 1.207 21 H -0.227 1.227 22 H -0.189 1.189 23 C -0.050 4.050 24 H 0.098 0.902 25 H 0.104 0.896 26 H 0.124 0.876 27 H 0.195 0.805 28 H 0.108 0.892 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.051 0.949 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.302 19.530 8.401 21.300 hybrid contribution -0.146 0.892 -0.644 1.110 sum 1.156 20.422 7.757 21.876 Atomic orbital electron populations 1.22210 0.75700 1.05940 1.03911 1.45099 1.08142 1.05268 1.54201 1.21735 0.91334 0.82236 1.18264 1.98368 1.91816 1.10851 1.97598 1.22148 0.94377 0.91162 1.06641 1.70496 1.18476 1.10561 1.20245 1.23134 0.85228 0.90398 1.03040 1.20535 1.01027 0.85203 0.92840 1.62266 1.40297 1.16871 1.07038 1.22034 0.90962 0.99730 0.93579 1.21653 1.00609 0.98384 0.94999 1.22032 1.00914 0.92972 1.00099 1.19147 0.93855 0.96646 0.90064 0.94717 1.20983 1.48347 0.90048 0.95902 0.90875 1.24973 0.94468 0.94681 0.98904 1.69898 1.48751 1.08834 1.26511 0.86833 0.77301 0.80752 0.83297 1.20686 1.22650 1.18905 1.22136 0.99730 0.82803 1.00283 0.90203 0.89560 0.87612 0.80473 0.89161 0.91299 0.91593 0.94646 0.92802 0.92208 0.92414 0.93584 0.92673 0.94936 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.55 10.66 59.85 0.64 1.19 16 2 N -0.44 -5.25 3.15 -117.77 -0.37 -5.62 16 3 C 0.01 0.06 7.49 -16.52 -0.12 -0.07 16 4 Cl -0.01 -0.14 28.93 -51.86 -1.50 -1.64 16 5 C 0.01 0.09 11.86 -17.75 -0.21 -0.12 16 6 N -0.48 -7.06 10.33 -10.76 -0.11 -7.18 16 7 C 0.24 3.35 5.68 -155.33 -0.88 2.46 16 8 C 0.13 1.81 5.37 -4.98 -0.03 1.79 16 9 N -0.54 -8.89 4.80 -236.11 -1.13 -10.02 16 10 C 0.06 1.10 4.95 -3.83 -0.02 1.09 16 11 C -0.12 -2.16 6.09 -26.65 -0.16 -2.32 16 12 C -0.12 -2.65 4.74 -26.61 -0.13 -2.77 16 13 C 0.02 0.51 1.85 -91.69 -0.17 0.34 16 14 H 0.03 0.83 7.19 -51.93 -0.37 0.46 16 15 C -0.51 -14.08 9.14 -34.44 -0.31 -14.39 16 16 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 17 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 18 N -0.90 -27.35 13.96 55.43 0.77 -26.57 16 19 Si 0.89 21.95 24.36 -169.99 -4.14 17.81 16 20 H -0.28 -6.79 6.89 56.52 0.39 -6.40 16 21 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 22 H -0.26 -6.29 6.53 56.52 0.37 -5.92 16 23 C 0.08 1.47 4.65 -3.83 -0.02 1.45 16 24 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.09 0.65 7.92 -51.93 -0.41 0.24 16 26 H 0.11 0.94 7.66 -51.93 -0.40 0.55 16 27 H 0.18 1.77 8.06 -52.48 -0.42 1.35 16 28 H 0.09 1.03 7.71 -51.93 -0.40 0.63 16 29 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 30 H 0.07 1.11 5.98 -51.93 -0.31 0.80 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.05 1.06 3.37 -51.93 -0.17 0.88 16 36 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 1.27 8.12 -51.93 -0.42 0.85 16 LS Contribution 313.22 15.07 4.72 4.72 Total: -1.00 -30.78 313.22 -8.74 -39.53 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -5.47 Total: -1.61 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -1.51 Total: -9.42 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: -0.84 Total: -49.39 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.14 Total: 17.81 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -1.50 Total: -1.64 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.78 -8.74 -39.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700103612.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.154 kcal (2) G-P(sol) polarization free energy of solvation -30.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds