Wall clock time and date at job start Tue Mar 31 2020 05:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36886 * 126.39439 * 2 1 4 4 Cl 1.73600 * 126.60077 * 0.05424 * 3 2 1 5 5 C 1.34794 * 106.80030 * 180.02562 * 3 2 1 6 6 N 1.34170 * 108.01737 * 359.77488 * 5 3 2 7 7 C 1.30473 * 109.26581 * 0.37638 * 6 5 3 8 8 C 1.50695 * 125.64236 * 179.89129 * 7 6 5 9 9 N 1.46896 * 109.47474 * 269.68861 * 8 7 6 10 10 C 1.46846 * 110.99998 * 294.21414 * 9 8 7 11 11 C 1.53042 * 109.52384 * 174.15789 * 10 9 8 12 12 C 1.53120 * 109.27679 * 59.17688 * 11 10 9 13 13 C 1.53114 * 109.16161 * 302.34397 * 12 11 10 14 14 H 1.08995 * 109.54002 * 297.69703 * 13 12 11 15 15 C 1.50704 * 109.50447 * 177.59739 * 13 12 11 16 16 H 1.08002 * 119.99914 * 240.19974 * 15 13 12 17 17 C 1.37871 * 119.99709 * 60.19866 * 15 13 12 18 18 N 1.31507 * 120.00312 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99691 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47287 * 90.00016 * 19 17 15 21 21 H 1.48498 * 109.47056 * 209.99601 * 19 17 15 22 22 H 1.48491 * 109.47248 * 329.99875 * 19 17 15 23 23 C 1.46850 * 111.00472 * 170.00002 * 9 8 7 24 24 H 1.09003 * 109.47188 * 269.95415 * 1 2 3 25 25 H 1.08997 * 109.47312 * 29.96442 * 1 2 3 26 26 H 1.09008 * 109.46845 * 149.96236 * 1 2 3 27 27 H 1.08000 * 125.99024 * 179.97438 * 5 3 2 28 28 H 1.09002 * 109.47120 * 149.68646 * 8 7 6 29 29 H 1.09004 * 109.46990 * 29.68891 * 8 7 6 30 30 H 1.08993 * 109.46639 * 54.13954 * 10 9 8 31 31 H 1.09010 * 109.45973 * 294.17120 * 10 9 8 32 32 H 1.08998 * 109.50041 * 299.23667 * 11 10 9 33 33 H 1.09005 * 109.50105 * 179.11475 * 11 10 9 34 34 H 1.08995 * 109.52336 * 182.44133 * 12 11 10 35 35 H 1.09002 * 109.52444 * 62.25092 * 12 11 10 36 36 H 0.97003 * 120.00453 * 179.97438 * 18 17 15 37 37 H 1.08995 * 109.45831 * 65.81919 * 23 9 8 38 38 H 1.08998 * 109.45719 * 305.85769 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1019 0.0000 4 17 1.7695 2.7620 0.0013 5 6 3.5471 0.6498 -0.0006 6 7 3.5102 -0.6914 0.0041 7 6 2.2671 -1.0878 -0.0005 8 6 1.8027 -2.5214 0.0000 9 7 1.6505 -2.9875 -1.3847 10 6 0.5698 -2.2648 -2.0675 11 6 0.5358 -2.6703 -3.5428 12 6 0.3099 -4.1812 -3.6467 13 6 1.4222 -4.9090 -2.8867 14 1 2.3846 -4.6855 -3.3468 15 6 1.1749 -6.3949 -2.9341 16 1 1.0373 -6.9489 -2.0173 17 6 1.1243 -7.0469 -4.1478 18 7 1.2913 -6.3722 -5.2642 19 14 0.8171 -8.8886 -4.2066 20 1 -0.6434 -9.1444 -4.2894 21 1 1.4888 -9.4647 -5.3991 22 1 1.3615 -9.5206 -2.9781 23 6 1.4305 -4.4387 -1.4305 24 1 -0.3634 -0.0008 1.0277 25 1 -0.3634 0.8903 -0.5133 26 1 -0.3633 -0.8897 -0.5145 27 1 4.4380 1.2602 -0.0011 28 1 0.8445 -2.5927 0.5147 29 1 2.5378 -3.1413 0.5134 30 1 0.7447 -1.1918 -1.9897 31 1 -0.3838 -2.5120 -1.6007 32 1 1.4840 -2.4109 -4.0134 33 1 -0.2765 -2.1455 -4.0457 34 1 0.3282 -4.4811 -4.6944 35 1 -0.6561 -4.4360 -3.2107 36 1 1.2561 -6.8310 -6.1182 37 1 0.4730 -4.6756 -0.9667 38 1 2.2306 -4.9444 -0.8900 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700103613.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:04 Heat of formation + Delta-G solvation = 58.657692 kcal Electronic energy + Delta-G solvation = -20484.708132 eV Core-core repulsion = 17389.034670 eV Total energy + Delta-G solvation = -3095.673462 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.26755 -38.29084 -36.91325 -34.36617 -33.87906 -32.04405 -30.14461 -29.40459 -27.40176 -25.77775 -25.00519 -22.28685 -21.83812 -21.34412 -19.68352 -18.73739 -17.40533 -16.61685 -16.16150 -15.27756 -15.02374 -14.54333 -14.39804 -14.03389 -13.64047 -13.44680 -13.15517 -12.96196 -12.73629 -12.44957 -12.15180 -11.97842 -11.90689 -11.64965 -11.41360 -10.96155 -10.73077 -10.68586 -10.18076 -10.02551 -9.87759 -9.74135 -9.52689 -9.15752 -8.74681 -8.38687 -8.32257 -7.80122 -5.98643 -4.05166 1.48157 1.72659 2.77349 2.98704 3.30195 3.37563 3.40341 4.28000 4.42609 4.48600 4.54915 4.86095 4.87748 5.15954 5.30115 5.31498 5.39671 5.50133 5.63727 5.71392 5.92893 5.96431 6.14444 6.29567 6.40799 6.42716 6.60862 6.67173 6.88138 6.91027 7.15337 7.30575 7.51845 7.64921 7.74673 7.96971 8.05390 8.14521 8.44568 8.98780 9.59388 11.07426 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.040153 B = 0.003658 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.170096 B = 7652.465217 C = 7857.774340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.453 5.453 3 C 0.003 3.997 4 Cl -0.017 7.017 5 C 0.009 3.991 6 N -0.465 5.465 7 C 0.250 3.750 8 C 0.136 3.864 9 N -0.529 5.529 10 C 0.057 3.943 11 C -0.116 4.116 12 C -0.110 4.110 13 C 0.055 3.945 14 H 0.037 0.963 15 C -0.515 4.515 16 H 0.054 0.946 17 C 0.063 3.937 18 N -0.888 5.888 19 Si 0.891 3.109 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.070 3.930 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.101 0.899 27 H 0.178 0.822 28 H 0.045 0.955 29 H 0.108 0.892 30 H 0.055 0.945 31 H 0.025 0.975 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.092 0.908 35 H 0.030 0.970 36 H 0.260 0.740 37 H 0.022 0.978 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.886 15.138 10.526 18.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.138 5.138 3 C -0.137 4.137 4 Cl 0.011 6.989 5 C -0.142 4.142 6 N -0.184 5.184 7 C -0.012 4.012 8 C 0.006 3.994 9 N -0.254 5.254 10 C -0.071 4.071 11 C -0.154 4.154 12 C -0.148 4.148 13 C 0.036 3.964 14 H 0.055 0.945 15 C -0.554 4.554 16 H 0.073 0.927 17 C -0.138 4.138 18 N -0.526 5.526 19 Si 0.719 3.281 20 H -0.208 1.208 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.057 4.057 24 H 0.098 0.902 25 H 0.107 0.893 26 H 0.119 0.881 27 H 0.195 0.805 28 H 0.063 0.937 29 H 0.126 0.874 30 H 0.073 0.927 31 H 0.043 0.957 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.110 0.890 35 H 0.049 0.951 36 H 0.070 0.930 37 H 0.040 0.960 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.971 14.835 10.094 18.051 hybrid contribution -1.832 -0.216 0.286 1.867 sum -3.803 14.619 10.379 18.328 Atomic orbital electron populations 1.22374 0.76415 1.05838 1.04080 1.45188 1.07758 1.05592 1.55265 1.21711 0.91347 0.82033 1.18574 1.98361 1.91829 1.11040 1.97626 1.22187 0.94290 0.91301 1.06400 1.70461 1.18399 1.10185 1.19310 1.23213 0.85269 0.90050 1.02703 1.20459 1.00162 0.86344 0.92427 1.61948 1.44838 1.06985 1.11660 1.22279 0.91245 0.96739 0.96850 1.21670 1.00781 0.99718 0.93249 1.21664 0.98295 0.90197 1.04675 1.18673 0.95796 0.93920 0.87996 0.94510 1.21120 1.49256 0.92614 0.92428 0.92749 1.24928 0.95140 0.97988 0.95741 1.69886 1.49932 1.35388 0.97422 0.86621 0.78161 0.85761 0.77594 1.20834 1.21246 1.19919 1.22368 0.98363 0.83066 1.01871 0.90166 0.89332 0.88106 0.80467 0.93714 0.87370 0.92695 0.95731 0.91934 0.93515 0.88986 0.95112 0.93023 0.95962 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.51 9.82 59.85 0.59 1.10 16 2 N -0.45 -5.77 2.75 -117.77 -0.32 -6.09 16 3 C 0.00 0.04 7.49 -16.52 -0.12 -0.08 16 4 Cl -0.02 -0.17 28.93 -51.86 -1.50 -1.67 16 5 C 0.01 0.12 11.86 -17.75 -0.21 -0.09 16 6 N -0.47 -7.64 11.25 -10.76 -0.12 -7.76 16 7 C 0.25 3.76 6.55 -155.33 -1.02 2.74 16 8 C 0.14 2.00 5.18 -4.98 -0.03 1.98 16 9 N -0.53 -9.47 4.65 -236.12 -1.10 -10.57 16 10 C 0.06 0.94 3.91 -3.83 -0.01 0.93 16 11 C -0.12 -2.23 6.09 -26.65 -0.16 -2.39 16 12 C -0.11 -2.53 5.03 -26.61 -0.13 -2.66 16 13 C 0.05 1.34 2.26 -91.69 -0.21 1.13 16 14 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 15 C -0.52 -13.78 8.56 -34.44 -0.29 -14.08 16 16 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 17 C 0.06 1.73 5.30 -17.83 -0.09 1.63 16 18 N -0.89 -25.04 11.36 55.43 0.63 -24.41 16 19 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 23 C 0.07 1.40 4.68 -3.83 -0.02 1.39 16 24 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.09 0.72 7.92 -51.93 -0.41 0.31 16 26 H 0.10 0.98 4.59 -51.92 -0.24 0.74 16 27 H 0.18 1.96 8.06 -52.49 -0.42 1.54 16 28 H 0.04 0.57 7.69 -51.93 -0.40 0.17 16 29 H 0.11 1.57 7.99 -51.93 -0.41 1.15 16 30 H 0.05 0.85 5.27 -51.93 -0.27 0.58 16 31 H 0.02 0.38 7.41 -51.92 -0.38 0.00 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.09 2.39 6.16 -51.93 -0.32 2.07 16 35 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.07 1.31 8.02 -51.93 -0.42 0.89 16 LS Contribution 314.55 15.07 4.74 4.74 Total: -1.00 -29.53 314.55 -9.77 -39.29 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -5.36 Total: -1.06 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -1.72 Total: -8.40 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: -0.91 Total: -48.83 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -1.50 Total: -1.67 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.53 -9.77 -39.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700103613.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.952 kcal (2) G-P(sol) polarization free energy of solvation -29.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds