Wall clock time and date at job start Tue Mar 31 2020 05:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29399 * 125.58262 * 2 1 4 4 N 1.40167 * 108.14354 * 179.97438 * 3 2 1 5 5 C 1.46500 * 126.35278 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47360 * 270.00206 * 5 4 3 7 7 O 1.20824 * 119.99839 * 0.02562 * 6 5 4 8 8 O 1.34221 * 119.99857 * 180.02562 * 6 5 4 9 9 C 1.45207 * 116.99792 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47139 * 179.97438 * 9 8 6 11 11 C 1.52995 * 109.47332 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.47514 * 180.02562 * 11 10 9 13 13 H 1.08006 * 119.99561 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00262 * 179.97438 * 12 11 10 15 15 N 1.31509 * 119.99899 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00093 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47445 * 59.99882 * 16 14 12 18 18 H 1.48504 * 109.47324 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.46898 * 299.99878 * 16 14 12 20 20 C 1.34944 * 107.29845 * 0.02562 * 4 3 2 21 21 O 1.21813 * 126.30587 * 179.97438 * 20 4 3 22 22 N 1.34820 * 107.38961 * 0.26122 * 20 4 3 23 23 C 1.46510 * 125.82785 * 179.70520 * 22 20 4 24 24 H 1.09001 * 109.47199 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.46341 * 120.02204 * 1 2 3 26 26 H 1.08992 * 109.46964 * 240.02483 * 1 2 3 27 27 H 1.08995 * 109.47110 * 30.00597 * 5 4 3 28 28 H 1.09003 * 109.46734 * 150.00055 * 5 4 3 29 29 H 1.08991 * 109.46887 * 299.99628 * 9 8 6 30 30 H 1.08997 * 109.46981 * 60.00027 * 9 8 6 31 31 H 1.09001 * 109.47509 * 300.00202 * 10 9 8 32 32 H 1.09002 * 109.47280 * 59.99715 * 10 9 8 33 33 H 1.09008 * 109.46876 * 300.00104 * 11 10 9 34 34 H 1.09002 * 109.47199 * 59.99630 * 11 10 9 35 35 H 0.97006 * 120.00221 * 179.97438 * 15 14 12 36 36 H 1.08993 * 109.46966 * 0.02715 * 23 22 20 37 37 H 1.09003 * 109.46486 * 120.02741 * 23 22 20 38 38 H 1.08996 * 109.47262 * 240.02264 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2600 1.0524 0.0000 4 7 3.5973 0.6323 0.0006 5 6 4.7793 1.4977 0.0003 6 6 5.1850 1.7935 -1.4206 7 8 4.5514 1.3295 -2.3388 8 8 6.2501 2.5725 -1.6661 9 6 6.5823 2.8153 -3.0587 10 6 7.8152 3.7177 -3.1390 11 6 8.1648 3.9741 -4.6063 12 6 9.3795 4.8625 -4.6855 13 1 9.8544 5.2099 -3.7797 14 6 9.8846 5.2318 -5.9141 15 7 9.3061 4.8092 -7.0169 16 14 11.3908 6.3324 -6.0122 17 1 12.5350 5.6667 -5.3393 18 1 11.7301 6.5813 -7.4364 19 1 11.1042 7.6246 -5.3390 20 6 3.5940 -0.7171 0.0004 21 8 4.5738 -1.4408 0.0003 22 7 2.3064 -1.1169 -0.0062 23 6 1.8396 -2.5056 -0.0149 24 1 -0.3634 1.0277 -0.0005 25 1 -0.3632 -0.5142 -0.8899 26 1 -0.3633 -0.5134 0.8901 27 1 4.5467 2.4307 0.5135 28 1 5.5981 0.9945 0.5147 29 1 6.7931 1.8669 -3.5525 30 1 5.7423 3.3035 -3.5527 31 1 7.6041 4.6662 -2.6451 32 1 8.6554 3.2300 -2.6448 33 1 8.3758 3.0257 -5.1005 34 1 7.3245 4.4621 -5.1001 35 1 9.6612 5.0693 -7.8813 36 1 2.6980 -3.1774 -0.0148 37 1 1.2333 -2.6906 0.8718 38 1 1.2403 -2.6819 -0.9081 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847646124.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:32 Heat of formation + Delta-G solvation = -50.884640 kcal Electronic energy + Delta-G solvation = -21511.682107 eV Core-core repulsion = 17970.549368 eV Total energy + Delta-G solvation = -3541.132739 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.73504 -40.20457 -37.60882 -36.69853 -35.55970 -33.99316 -32.66031 -31.75143 -30.80709 -27.79081 -27.50306 -26.40480 -23.41163 -22.20827 -21.41331 -20.79402 -20.30435 -17.94887 -17.70309 -16.98277 -16.56813 -16.43526 -16.17024 -15.83106 -15.53833 -14.50598 -14.43273 -14.19166 -14.11003 -13.83101 -13.20187 -13.12287 -13.06167 -12.73080 -12.27397 -12.15529 -12.12636 -11.97507 -11.86270 -10.94586 -10.86427 -10.64318 -10.63222 -10.53062 -10.39495 -10.20084 -9.71596 -9.50373 -9.17089 -8.78483 -8.37488 -6.02290 -4.05493 1.33094 1.60618 2.24877 2.35415 2.62543 3.01206 3.33619 3.37725 3.40455 3.99879 4.23664 4.44102 4.57359 4.72961 4.74521 4.78580 4.90187 4.92682 5.09754 5.23043 5.31438 5.33528 5.53007 5.58208 5.62472 5.75283 6.01112 6.21308 6.45735 6.54788 6.82805 6.98823 7.33318 7.61012 7.72156 7.73969 7.86603 7.95837 8.36782 9.00519 9.58670 11.09185 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.043202 B = 0.002506 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.956333 B =11170.817434 C =11244.764612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.278 3.722 3 N -0.272 5.272 4 N -0.442 5.442 5 C 0.172 3.828 6 C 0.440 3.560 7 O -0.500 6.500 8 O -0.354 6.354 9 C 0.070 3.930 10 C -0.108 4.108 11 C 0.024 3.976 12 C -0.522 4.522 13 H 0.057 0.943 14 C 0.056 3.944 15 N -0.895 5.895 16 Si 0.896 3.104 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.655 3.345 21 O -0.549 6.549 22 N -0.558 5.558 23 C 0.096 3.904 24 H 0.100 0.900 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.139 0.861 28 H 0.138 0.862 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.262 0.738 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.406 -12.043 18.164 29.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.000 4.000 3 N -0.094 5.094 4 N -0.262 5.262 5 C 0.048 3.952 6 C 0.280 3.720 7 O -0.387 6.387 8 O -0.270 6.270 9 C -0.003 4.003 10 C -0.146 4.146 11 C -0.013 4.013 12 C -0.560 4.560 13 H 0.076 0.924 14 C -0.145 4.145 15 N -0.534 5.534 16 Si 0.724 3.276 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C 0.355 3.645 21 O -0.421 6.421 22 N -0.287 5.287 23 C -0.046 4.046 24 H 0.119 0.881 25 H 0.111 0.889 26 H 0.110 0.890 27 H 0.157 0.843 28 H 0.156 0.844 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.072 0.928 36 H 0.114 0.886 37 H 0.097 0.903 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -19.740 -11.636 17.644 28.920 hybrid contribution 0.823 -0.208 -0.497 0.983 sum -18.917 -11.844 17.147 28.146 Atomic orbital electron populations 1.20438 0.82706 1.05998 1.04278 1.24214 0.96552 0.81858 0.97415 1.77028 0.87205 1.21009 1.24207 1.48258 1.03879 1.04853 1.69243 1.20750 0.85139 0.96918 0.92359 1.23841 0.79053 0.76511 0.92582 1.90684 1.52726 1.48824 1.46469 1.86470 1.44395 1.62416 1.33731 1.23549 0.99578 1.00818 0.76371 1.21775 0.93454 0.97418 1.01963 1.19052 0.96876 0.97262 0.88124 1.21134 1.12215 1.30310 0.92352 0.92434 1.25034 0.97341 0.96346 0.95772 1.69957 1.40690 1.45231 0.97532 0.86592 0.83089 0.81015 0.76920 1.20161 1.21273 1.20166 1.16638 0.83736 0.83167 0.80997 1.91102 1.34759 1.57884 1.58402 1.45786 1.06518 1.08436 1.67980 1.21841 1.01864 0.77784 1.03083 0.88082 0.88947 0.89012 0.84334 0.84410 0.91477 0.91442 0.92028 0.92026 0.96242 0.96235 0.92829 0.88630 0.90269 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.25 10.10 36.01 0.36 0.11 16 2 C 0.28 2.48 7.98 -154.17 -1.23 1.25 16 3 N -0.27 -3.28 12.53 32.97 0.41 -2.86 16 4 N -0.44 -6.02 3.11 -66.31 -0.21 -6.23 16 5 C 0.17 2.06 6.98 -5.19 -0.04 2.02 16 6 C 0.44 7.21 8.03 36.01 0.29 7.50 16 7 O -0.50 -9.97 16.18 -18.75 -0.30 -10.27 16 8 O -0.35 -6.09 10.22 -39.23 -0.40 -6.49 16 9 C 0.07 1.35 5.47 37.16 0.20 1.55 16 10 C -0.11 -2.30 5.53 -26.73 -0.15 -2.45 16 11 C 0.02 0.63 4.97 -27.89 -0.14 0.49 16 12 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 13 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -27.21 13.29 55.43 0.74 -26.48 16 16 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 C 0.65 9.44 8.61 -86.73 -0.75 8.70 16 21 O -0.55 -9.54 17.48 5.09 0.09 -9.46 16 22 N -0.56 -5.67 3.14 -125.40 -0.39 -6.06 16 23 C 0.10 0.54 10.86 59.85 0.65 1.19 16 24 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.09 0.10 8.14 -51.93 -0.42 -0.33 16 27 H 0.14 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.14 1.38 8.11 -51.93 -0.42 0.96 16 29 H 0.07 1.33 8.13 -51.93 -0.42 0.91 16 30 H 0.07 1.31 8.13 -51.93 -0.42 0.89 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 33 H 0.02 0.53 8.14 -51.92 -0.42 0.11 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.09 0.65 7.73 -51.93 -0.40 0.25 16 37 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 38 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 339.48 15.07 5.12 5.12 Total: -1.00 -38.51 339.48 -6.61 -45.13 By element: Atomic # 1 Polarization: -0.42 SS G_CDS: -5.44 Total: -5.86 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -1.21 Total: 6.68 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: 0.55 Total: -41.64 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.62 Total: -26.21 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -38.51 -6.61 -45.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847646124.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.758 kcal (2) G-P(sol) polarization free energy of solvation -38.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds