Wall clock time and date at job start Tue Mar 31 2020 05:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47462 * 2 1 4 4 H 1.09004 * 109.46863 * 54.49508 * 3 2 1 5 5 C 1.50697 * 109.47518 * 174.50012 * 3 2 1 6 6 H 1.08001 * 120.00059 * 114.20566 * 5 3 2 7 7 C 1.37880 * 120.00049 * 294.20991 * 5 3 2 8 8 N 1.31504 * 120.00044 * 159.14940 * 7 5 3 9 9 Si 1.86799 * 119.99571 * 339.14264 * 7 5 3 10 10 H 1.48500 * 109.47487 * 270.00164 * 9 7 5 11 11 H 1.48497 * 109.47192 * 30.00778 * 9 7 5 12 12 H 1.48504 * 109.46607 * 150.00481 * 9 7 5 13 13 O 1.45206 * 109.47136 * 294.50568 * 3 2 1 14 14 C 1.34231 * 117.00364 * 89.99576 * 13 3 2 15 15 O 1.20819 * 119.99824 * 359.97438 * 14 13 3 16 16 C 1.50695 * 120.00032 * 180.02562 * 14 13 3 17 17 N 1.46494 * 109.47346 * 180.02562 * 16 14 13 18 18 N 1.40175 * 126.34722 * 270.02673 * 17 16 14 19 19 C 1.29401 * 108.13563 * 179.97438 * 18 17 16 20 20 C 1.50705 * 125.58330 * 179.97438 * 19 18 17 21 21 N 1.37356 * 108.83446 * 359.97438 * 19 18 17 22 22 C 1.46505 * 125.83390 * 180.02562 * 21 19 18 23 23 C 1.34817 * 108.33111 * 359.73686 * 21 19 18 24 24 O 1.21815 * 126.30087 * 180.28379 * 23 21 19 25 25 H 1.08998 * 109.47416 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46909 * 299.99620 * 1 2 3 27 27 H 1.08996 * 109.47578 * 59.99883 * 1 2 3 28 28 H 1.09008 * 109.46909 * 240.00380 * 2 1 3 29 29 H 1.08996 * 109.47664 * 120.00667 * 2 1 3 30 30 H 0.96995 * 120.00138 * 354.92879 * 8 7 5 31 31 H 1.09006 * 109.47345 * 299.99897 * 16 14 13 32 32 H 1.09005 * 109.47483 * 59.99656 * 16 14 13 33 33 H 1.09002 * 109.46989 * 0.02562 * 20 19 18 34 34 H 1.08998 * 109.47049 * 120.02371 * 20 19 18 35 35 H 1.08996 * 109.47403 * 240.02570 * 20 19 18 36 36 H 1.08998 * 109.47097 * 90.00205 * 22 21 19 37 37 H 1.08997 * 109.46889 * 209.99599 * 22 21 19 38 38 H 1.09000 * 109.46860 * 330.00223 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5984 1.9840 0.8366 5 6 3.5408 1.4446 0.1362 6 1 4.1563 1.8015 -0.6764 7 6 4.1283 0.9910 1.2982 8 7 5.3850 0.6038 1.2918 9 14 3.1390 0.9267 2.8813 10 1 3.2806 2.2150 3.6063 11 1 1.7078 0.6933 2.5616 12 1 3.6423 -0.1795 3.7348 13 8 1.6660 2.0881 -1.2457 14 6 0.4830 2.7218 -1.2725 15 8 -0.2170 2.7362 -0.2879 16 6 0.0276 3.4144 -2.5310 17 7 -1.2842 4.0258 -2.3046 18 7 -2.5307 3.4208 -2.5175 19 6 -3.4514 4.2746 -2.2047 20 6 -4.9366 4.0319 -2.2862 21 7 -2.8535 5.4383 -1.7863 22 6 -3.5495 6.6495 -1.3447 23 6 -1.5168 5.2732 -1.8455 24 8 -0.6741 6.0992 -1.5433 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 5.8771 0.5674 0.4568 31 1 0.7468 4.1878 -2.8008 32 1 -0.0447 2.6874 -3.3400 33 1 -5.1201 3.0211 -2.6505 34 1 -5.3784 4.1471 -1.2964 35 1 -5.3854 4.7518 -2.9704 36 1 -3.7175 6.6001 -0.2689 37 1 -2.9411 7.5234 -1.5777 38 1 -4.5075 6.7259 -1.8590 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847692977.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:40 Heat of formation + Delta-G solvation = -69.350841 kcal Electronic energy + Delta-G solvation = -22931.482270 eV Core-core repulsion = 19389.548776 eV Total energy + Delta-G solvation = -3541.933493 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.57431 -41.54712 -38.64108 -38.02121 -36.42319 -35.62260 -33.96926 -33.34444 -31.51212 -29.59241 -28.36312 -27.58473 -24.61810 -23.55496 -22.52131 -22.06866 -21.44985 -20.02702 -19.04874 -18.54085 -17.99898 -17.57118 -17.19521 -16.77841 -16.72788 -15.72397 -15.22291 -15.01273 -14.80758 -14.73324 -14.59915 -14.43979 -14.19939 -13.66958 -13.56132 -13.39835 -13.17325 -13.07725 -12.94830 -12.88140 -12.77114 -12.49842 -11.94784 -11.89137 -11.64165 -11.52436 -11.51617 -11.03752 -10.95482 -10.59310 -9.71901 -8.98130 -6.58045 0.48556 0.90795 1.11723 1.37598 1.39543 1.40115 1.61787 1.85578 2.12322 2.31660 2.82916 3.28458 3.63841 3.75416 3.97540 4.02823 4.12241 4.16801 4.18873 4.29834 4.42991 4.54554 4.69505 4.75276 4.77402 4.81956 4.89182 4.94201 5.01623 5.03092 5.07886 5.34072 5.41107 5.60945 5.79069 5.90399 6.34903 6.52326 6.73847 6.83346 7.15972 8.42473 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.026820 B = 0.004405 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.748585 B = 6354.855996 C = 6536.317181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.134 4.134 3 C 0.204 3.796 4 H 0.024 0.976 5 C -0.625 4.625 6 H 0.034 0.966 7 C 0.007 3.993 8 N -0.911 5.911 9 Si 1.068 2.932 10 H -0.273 1.273 11 H -0.253 1.253 12 H -0.264 1.264 13 O -0.353 6.353 14 C 0.432 3.568 15 O -0.532 6.532 16 C 0.174 3.826 17 N -0.448 5.448 18 N -0.307 5.307 19 C 0.291 3.709 20 C -0.073 4.073 21 N -0.554 5.554 22 C 0.088 3.912 23 C 0.634 3.366 24 O -0.596 6.596 25 H 0.074 0.926 26 H 0.041 0.959 27 H 0.040 0.960 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.263 0.737 31 H 0.145 0.855 32 H 0.170 0.830 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.126 0.874 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.018 7.301 -9.117 28.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.172 4.172 3 C 0.150 3.850 4 H 0.042 0.958 5 C -0.663 4.663 6 H 0.053 0.947 7 C -0.195 4.195 8 N -0.544 5.544 9 Si 0.888 3.112 10 H -0.199 1.199 11 H -0.177 1.177 12 H -0.189 1.189 13 O -0.269 6.269 14 C 0.274 3.726 15 O -0.422 6.422 16 C 0.050 3.950 17 N -0.267 5.267 18 N -0.131 5.131 19 C 0.013 3.987 20 C -0.131 4.131 21 N -0.282 5.282 22 C -0.051 4.051 23 C 0.333 3.667 24 O -0.472 6.472 25 H 0.093 0.907 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.163 0.837 32 H 0.187 0.813 33 H 0.125 0.875 34 H 0.131 0.869 35 H 0.144 0.856 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -25.206 6.577 -7.342 27.065 hybrid contribution 0.960 1.136 -1.178 1.897 sum -24.246 7.713 -8.519 26.832 Atomic orbital electron populations 1.21761 0.94903 1.01739 1.00820 1.22157 0.95828 0.96951 1.02253 1.20775 0.94247 0.89856 0.80129 0.95838 1.22021 0.90597 1.49312 1.04322 0.94717 1.26871 0.97076 0.91191 1.04404 1.70905 1.11320 1.41619 1.30589 0.83764 0.75919 0.78623 0.72933 1.19889 1.17748 1.18878 1.86494 1.35450 1.63023 1.41912 1.24621 0.79919 0.76637 0.91409 1.90591 1.55419 1.58762 1.37411 1.20941 0.80334 1.00483 0.93200 1.48386 1.05074 1.11560 1.61654 1.77029 0.87587 1.21601 1.26847 1.25390 0.99432 0.81289 0.92551 1.20804 0.79104 1.06634 1.06598 1.46060 1.05442 1.16555 1.60140 1.22219 0.98657 0.82266 1.02004 1.17054 0.84302 0.83867 0.81455 1.91044 1.49348 1.48432 1.58408 0.90676 0.94000 0.94053 0.91727 0.91440 0.92798 0.83745 0.81303 0.87458 0.86857 0.85604 0.90189 0.90313 0.84483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.30 8.57 71.98 0.62 -4.68 16 2 C -0.13 -6.14 5.08 30.59 0.16 -5.98 16 3 C 0.20 10.74 1.79 29.85 0.05 10.79 16 4 H 0.02 1.32 5.56 -2.38 -0.01 1.31 16 5 C -0.63 -37.58 9.13 25.60 0.23 -37.34 16 6 H 0.03 2.27 8.06 -2.91 -0.02 2.24 16 7 C 0.01 0.39 5.25 84.66 0.44 0.83 16 8 N -0.91 -56.70 13.69 21.45 0.29 -56.41 16 9 Si 1.07 51.56 26.34 68.60 1.81 53.36 16 10 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.25 -11.45 5.89 99.48 0.59 -10.86 16 12 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 13 O -0.35 -16.96 9.81 -51.42 -0.50 -17.46 16 14 C 0.43 18.23 6.50 71.23 0.46 18.70 16 15 O -0.53 -25.15 13.57 21.99 0.30 -24.85 16 16 C 0.17 5.45 6.98 85.63 0.60 6.05 16 17 N -0.45 -14.42 3.11 -481.79 -1.50 -15.92 16 18 N -0.31 -8.22 12.53 -49.59 -0.62 -8.84 16 19 C 0.29 5.45 7.98 137.69 1.10 6.55 16 20 C -0.07 -0.36 9.85 71.24 0.70 0.34 16 21 N -0.55 -12.42 3.14 -668.81 -2.10 -14.52 16 22 C 0.09 1.05 10.85 127.77 1.39 2.44 16 23 C 0.63 21.41 8.60 178.99 1.54 22.95 16 24 O -0.60 -24.69 17.72 -4.72 -0.08 -24.77 16 25 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.04 1.73 7.82 -2.38 -0.02 1.71 16 27 H 0.04 1.61 6.05 -2.39 -0.01 1.60 16 28 H 0.06 2.89 8.14 -2.38 -0.02 2.87 16 29 H 0.07 3.10 5.66 -2.39 -0.01 3.09 16 30 H 0.26 16.44 8.73 -92.71 -0.81 15.63 16 31 H 0.15 4.18 8.11 -2.38 -0.02 4.16 16 32 H 0.17 3.97 8.14 -2.38 -0.02 3.95 16 33 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 35 H 0.13 -0.17 8.14 -2.39 -0.02 -0.19 16 36 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.08 1.13 8.08 -2.39 -0.02 1.11 16 38 H 0.14 0.23 7.79 -2.39 -0.02 0.21 16 Total: -1.00 -87.35 323.47 5.79 -81.55 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: 0.91 Total: 7.23 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: 7.29 Total: 20.64 kcal Atomic # 7 Polarization: -91.77 SS G_CDS: -3.93 Total: -95.70 kcal Atomic # 8 Polarization: -66.80 SS G_CDS: -0.29 Total: -67.09 kcal Atomic # 14 Polarization: 51.56 SS G_CDS: 1.81 Total: 53.36 kcal Total: -87.35 5.79 -81.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847692977.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.201 kcal (2) G-P(sol) polarization free energy of solvation -87.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds