Wall clock time and date at job start Tue Mar 31 2020 05:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46905 * 109.46954 * 2 1 4 4 C 1.46898 * 111.00020 * 55.01804 * 3 2 1 5 5 C 1.50702 * 109.47468 * 66.04317 * 4 3 2 6 6 H 1.07999 * 119.99503 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00204 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99736 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00238 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.46918 * 59.99859 * 9 7 5 11 11 H 1.48496 * 109.47526 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46965 * 300.00274 * 9 7 5 13 13 C 1.46904 * 111.00156 * 291.06023 * 3 2 1 14 14 N 1.46501 * 109.47078 * 287.57625 * 13 3 2 15 15 N 1.40077 * 126.03332 * 275.84179 * 14 13 3 16 16 C 1.30860 * 108.21922 * 179.88070 * 15 14 13 17 17 C 1.39924 * 108.21345 * 0.38202 * 16 15 14 18 18 Cl 1.73603 * 126.04446 * 179.79493 * 17 16 15 19 19 C 1.35042 * 126.03738 * 96.15574 * 14 13 3 20 20 C 1.50700 * 126.13574 * 359.94014 * 19 14 13 21 21 C 1.53001 * 117.50038 * 134.33816 * 20 19 14 22 22 C 1.53004 * 117.49909 * 65.67903 * 20 19 14 23 23 H 1.09003 * 109.47024 * 56.22716 * 1 2 3 24 24 H 1.08994 * 109.46821 * 176.22633 * 1 2 3 25 25 H 1.08999 * 109.47407 * 296.22873 * 1 2 3 26 26 H 1.09001 * 109.47303 * 240.00389 * 2 1 3 27 27 H 1.08997 * 109.47073 * 119.99902 * 2 1 3 28 28 H 1.08998 * 109.47321 * 186.04819 * 4 3 2 29 29 H 1.09006 * 109.46762 * 306.04248 * 4 3 2 30 30 H 0.97007 * 119.99530 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.46954 * 47.57556 * 13 3 2 32 32 H 1.08993 * 109.46940 * 167.57192 * 13 3 2 33 33 H 1.08008 * 125.88800 * 180.14068 * 16 15 14 34 34 H 1.09001 * 115.55394 * 280.00740 * 20 19 14 35 35 H 1.08999 * 117.49980 * 359.97438 * 21 20 19 36 36 H 1.09001 * 117.49750 * 145.02103 * 21 20 19 37 37 H 1.09004 * 117.49675 * 214.97781 * 22 20 19 38 38 H 1.09001 * 117.49907 * 359.97367 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4538 2.1434 1.1236 5 6 1.9720 1.5800 2.4217 6 1 2.6539 0.7425 2.4128 7 6 1.5757 2.1336 3.6206 8 7 0.7449 3.1531 3.6314 9 14 2.2185 1.4356 5.2296 10 1 3.6995 1.5407 5.2581 11 1 1.6455 2.2014 6.3655 12 1 1.8213 0.0093 5.3443 13 6 1.7305 2.0457 -1.2798 14 7 2.6125 1.5065 -2.3180 15 7 3.9213 1.9269 -2.5872 16 6 4.3850 1.2109 -3.5795 17 6 3.3845 0.3183 -3.9798 18 17 3.5063 -0.8438 -5.2637 19 6 2.3052 0.5206 -3.1881 20 6 0.9958 -0.2216 -3.2640 21 6 0.3793 -0.4267 -4.6492 22 6 -0.2448 0.5746 -3.6739 23 1 -0.3633 0.5713 -0.8543 24 1 -0.3633 -1.0254 -0.0676 25 1 -0.3634 0.4542 0.9218 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.7462 3.1901 1.0394 29 1 0.3666 2.0671 1.1026 30 1 0.4664 3.5428 4.4749 31 1 0.6916 1.8646 -1.5556 32 1 1.8985 3.1181 -1.1812 33 1 5.3688 1.2970 -4.0169 34 1 0.8635 -1.0177 -2.5314 35 1 0.9205 -0.0245 -5.5056 36 1 -0.1590 -1.3576 -4.8276 37 1 -1.1933 0.3019 -3.2112 38 1 -0.1140 1.6353 -3.8883 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853492134.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:49 Heat of formation + Delta-G solvation = 107.329545 kcal Electronic energy + Delta-G solvation = -20667.309485 eV Core-core repulsion = 17573.746593 eV Total energy + Delta-G solvation = -3093.562892 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.30316 -37.50147 -37.05073 -36.21226 -32.88332 -31.88269 -29.95722 -29.27114 -27.10784 -24.82956 -23.33079 -23.26477 -22.62707 -20.97440 -20.04892 -19.08948 -17.10991 -16.21392 -16.05880 -15.44135 -15.09474 -14.57477 -14.38124 -14.29621 -13.86425 -13.68243 -12.94016 -12.53389 -12.37409 -12.01092 -11.86428 -11.85944 -11.52484 -11.32476 -11.17851 -11.07467 -10.85492 -10.75882 -10.69344 -10.56210 -10.19763 -10.11262 -9.96750 -9.43765 -9.20828 -8.52296 -8.22663 -7.48345 -6.11628 -4.13117 1.85884 2.15905 2.74672 2.93756 3.29276 3.33591 3.37103 3.61816 4.30473 4.36405 4.61474 4.70325 4.75172 4.97527 5.09633 5.24867 5.26991 5.48678 5.51553 5.60014 5.63116 5.71799 5.77685 5.86867 5.92404 5.97203 5.98999 6.22182 6.51154 6.53448 6.75137 6.97613 7.06844 7.22560 7.65424 7.75372 7.91951 8.01745 8.35371 8.92783 9.51353 10.98945 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.026345 B = 0.004467 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.554879 B = 6266.542549 C = 6682.338873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.058 3.942 3 N -0.541 5.541 4 C 0.196 3.804 5 C -0.507 4.507 6 H 0.062 0.938 7 C 0.058 3.942 8 N -0.898 5.898 9 Si 0.899 3.101 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.289 3.711 14 N -0.333 5.333 15 N -0.262 5.262 16 C 0.050 3.950 17 C -0.189 4.189 18 Cl -0.053 7.053 19 C 0.132 3.868 20 C -0.105 4.105 21 C -0.151 4.151 22 C -0.171 4.171 23 H 0.045 0.955 24 H 0.049 0.951 25 H 0.076 0.924 26 H 0.051 0.949 27 H 0.083 0.917 28 H 0.031 0.969 29 H 0.007 0.993 30 H 0.263 0.737 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.186 0.814 34 H 0.127 0.873 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.265 -6.532 -16.600 17.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.070 4.070 3 N -0.266 5.266 4 C 0.071 3.929 5 C -0.545 4.545 6 H 0.081 0.919 7 C -0.143 4.143 8 N -0.537 5.537 9 Si 0.727 3.273 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.203 1.203 13 C 0.079 3.921 14 N -0.115 5.115 15 N -0.083 5.083 16 C -0.136 4.136 17 C -0.228 4.228 18 Cl -0.025 7.025 19 C 0.002 3.998 20 C -0.124 4.124 21 C -0.189 4.189 22 C -0.208 4.208 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.095 0.905 26 H 0.069 0.931 27 H 0.101 0.899 28 H 0.049 0.951 29 H 0.025 0.975 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.120 0.880 33 H 0.203 0.797 34 H 0.145 0.855 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.675 -5.469 -15.515 16.464 hybrid contribution -0.560 -1.047 0.264 1.216 sum -1.234 -6.516 -15.251 16.630 Atomic orbital electron populations 1.22424 0.98710 1.01072 1.02614 1.22048 0.92546 0.90779 1.01594 1.62117 1.60279 1.02776 1.01449 1.19798 0.93544 0.93242 0.86289 1.21009 1.27517 1.16421 0.89586 0.91947 1.24944 0.95119 0.95014 0.99257 1.69936 1.33546 1.23396 1.26837 0.86540 0.79312 0.78933 0.82539 1.20122 1.21300 1.20267 1.22251 0.88849 0.97681 0.83336 1.48817 1.10901 1.26635 1.25179 1.77600 0.91900 1.22422 1.16333 1.23761 0.99815 0.94516 0.95547 1.20349 0.96740 1.03963 1.01698 1.98281 1.98075 1.57754 1.48437 1.19745 0.95348 0.92264 0.92477 1.20541 0.88835 1.01889 1.01154 1.23016 1.02269 1.01074 0.92548 1.23079 0.96241 0.98024 1.03492 0.93634 0.93165 0.90513 0.93071 0.89868 0.95050 0.97532 0.92753 0.91023 0.88030 0.79727 0.85488 0.88071 0.87949 0.87840 0.88626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.08 8.98 37.16 0.33 -2.74 16 2 C 0.06 1.07 5.64 -3.82 -0.02 1.05 16 3 N -0.54 -11.17 4.82 -239.97 -1.16 -12.33 16 4 C 0.20 4.75 4.37 -4.98 -0.02 4.73 16 5 C -0.51 -13.67 8.58 -34.44 -0.30 -13.96 16 6 H 0.06 1.70 7.10 -52.49 -0.37 1.33 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -25.63 13.29 55.43 0.74 -24.89 16 9 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 C 0.29 5.06 5.95 -63.31 -0.38 4.69 16 14 N -0.33 -5.60 3.61 -60.09 -0.22 -5.81 16 15 N -0.26 -4.64 12.58 30.64 0.39 -4.25 16 16 C 0.05 0.74 12.02 -17.33 -0.21 0.53 16 17 C -0.19 -2.67 6.58 -39.97 -0.26 -2.94 16 18 Cl -0.05 -0.64 27.53 -51.86 -1.43 -2.06 16 19 C 0.13 1.93 5.43 -82.20 -0.45 1.49 16 20 C -0.10 -1.24 4.80 -91.77 -0.44 -1.68 16 21 C -0.15 -1.45 9.34 -26.69 -0.25 -1.70 16 22 C -0.17 -1.73 8.95 -26.69 -0.24 -1.97 16 23 H 0.04 0.66 5.86 -51.93 -0.30 0.36 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.08 1.48 6.43 -51.93 -0.33 1.14 16 26 H 0.05 0.87 5.01 -51.93 -0.26 0.61 16 27 H 0.08 1.69 7.01 -51.93 -0.36 1.33 16 28 H 0.03 0.83 7.86 -51.93 -0.41 0.42 16 29 H 0.01 0.17 5.96 -51.93 -0.31 -0.14 16 30 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.07 1.12 4.76 -51.93 -0.25 0.87 16 32 H 0.10 1.82 7.80 -51.93 -0.41 1.42 16 33 H 0.19 2.10 8.06 -52.48 -0.42 1.68 16 34 H 0.13 1.52 6.89 -51.93 -0.36 1.16 16 35 H 0.10 1.01 7.38 -51.93 -0.38 0.63 16 36 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 319.76 15.07 4.82 4.82 Total: -1.00 -29.19 319.76 -9.20 -38.39 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -4.99 Total: 0.92 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -2.33 Total: -11.01 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: -0.25 Total: -47.28 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.43 Total: -2.06 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.19 -9.20 -38.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853492134.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.716 kcal (2) G-P(sol) polarization free energy of solvation -29.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds