Wall clock time and date at job start Tue Mar 31 2020 05:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46905 * 109.46954 * 2 1 4 4 C 1.46898 * 111.00020 * 55.01804 * 3 2 1 5 5 C 1.50702 * 109.47468 * 66.04317 * 4 3 2 6 6 H 1.07999 * 119.99503 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00204 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99736 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00238 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.46918 * 59.99859 * 9 7 5 11 11 H 1.48496 * 109.47526 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46965 * 300.00274 * 9 7 5 13 13 C 1.46904 * 111.00156 * 291.06023 * 3 2 1 14 14 N 1.46501 * 109.47078 * 287.57625 * 13 3 2 15 15 N 1.40077 * 126.03332 * 275.84179 * 14 13 3 16 16 C 1.30860 * 108.21922 * 179.88070 * 15 14 13 17 17 C 1.39924 * 108.21345 * 0.38202 * 16 15 14 18 18 Cl 1.73603 * 126.04446 * 179.79493 * 17 16 15 19 19 C 1.35042 * 126.03738 * 96.15574 * 14 13 3 20 20 C 1.50700 * 126.13574 * 359.94014 * 19 14 13 21 21 C 1.53001 * 117.50038 * 134.33816 * 20 19 14 22 22 C 1.53004 * 117.49909 * 65.67903 * 20 19 14 23 23 H 1.09003 * 109.47024 * 56.22716 * 1 2 3 24 24 H 1.08994 * 109.46821 * 176.22633 * 1 2 3 25 25 H 1.08999 * 109.47407 * 296.22873 * 1 2 3 26 26 H 1.09001 * 109.47303 * 240.00389 * 2 1 3 27 27 H 1.08997 * 109.47073 * 119.99902 * 2 1 3 28 28 H 1.08998 * 109.47321 * 186.04819 * 4 3 2 29 29 H 1.09006 * 109.46762 * 306.04248 * 4 3 2 30 30 H 0.97007 * 119.99530 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.46954 * 47.57556 * 13 3 2 32 32 H 1.08993 * 109.46940 * 167.57192 * 13 3 2 33 33 H 1.08008 * 125.88800 * 180.14068 * 16 15 14 34 34 H 1.09001 * 115.55394 * 280.00740 * 20 19 14 35 35 H 1.08999 * 117.49980 * 359.97438 * 21 20 19 36 36 H 1.09001 * 117.49750 * 145.02103 * 21 20 19 37 37 H 1.09004 * 117.49675 * 214.97781 * 22 20 19 38 38 H 1.09001 * 117.49907 * 359.97367 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4538 2.1434 1.1236 5 6 1.9720 1.5800 2.4217 6 1 2.6539 0.7425 2.4128 7 6 1.5757 2.1336 3.6206 8 7 0.7449 3.1531 3.6314 9 14 2.2185 1.4356 5.2296 10 1 3.6995 1.5407 5.2581 11 1 1.6455 2.2014 6.3655 12 1 1.8213 0.0093 5.3443 13 6 1.7305 2.0457 -1.2798 14 7 2.6125 1.5065 -2.3180 15 7 3.9213 1.9269 -2.5872 16 6 4.3850 1.2109 -3.5795 17 6 3.3845 0.3183 -3.9798 18 17 3.5063 -0.8438 -5.2637 19 6 2.3052 0.5206 -3.1881 20 6 0.9958 -0.2216 -3.2640 21 6 0.3793 -0.4267 -4.6492 22 6 -0.2448 0.5746 -3.6739 23 1 -0.3633 0.5713 -0.8543 24 1 -0.3633 -1.0254 -0.0676 25 1 -0.3634 0.4542 0.9218 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.7462 3.1901 1.0394 29 1 0.3666 2.0671 1.1026 30 1 0.4664 3.5428 4.4749 31 1 0.6916 1.8646 -1.5556 32 1 1.8985 3.1181 -1.1812 33 1 5.3688 1.2970 -4.0169 34 1 0.8635 -1.0177 -2.5314 35 1 0.9205 -0.0245 -5.5056 36 1 -0.1590 -1.3576 -4.8276 37 1 -1.1933 0.3019 -3.2112 38 1 -0.1140 1.6353 -3.8883 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853492134.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:48 Heat of formation + Delta-G solvation = 90.141711 kcal Electronic energy + Delta-G solvation = -20668.054805 eV Core-core repulsion = 17573.746593 eV Total energy + Delta-G solvation = -3094.308213 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.47362 -39.01474 -37.97596 -37.24110 -34.85165 -33.27570 -31.26506 -30.66648 -28.87712 -26.27146 -25.08535 -24.31573 -23.45293 -22.26616 -21.42729 -20.30956 -18.55002 -17.96159 -17.36372 -16.89241 -16.53408 -16.04385 -15.60218 -15.47941 -15.22035 -14.86027 -14.40894 -14.21474 -13.64536 -13.37119 -13.21749 -13.09685 -12.93638 -12.69085 -12.56963 -12.51857 -12.40402 -12.17894 -11.96708 -11.69592 -11.67081 -11.42804 -11.38036 -11.12789 -10.62372 -10.44607 -9.38237 -9.10509 -8.21550 -6.30151 0.69336 1.02004 1.40225 1.42310 1.50062 1.62045 1.79923 2.39168 2.78080 3.10703 3.17179 3.34959 3.61408 3.83980 3.92419 4.11708 4.12151 4.17428 4.21919 4.40858 4.50233 4.59614 4.73558 4.75651 4.84389 4.92437 4.97625 5.09434 5.14508 5.24044 5.27244 5.41730 5.44972 5.59890 5.81593 6.00180 6.22099 6.47123 6.64565 6.82543 7.38592 8.88463 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.026345 B = 0.004467 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.554879 B = 6266.542549 C = 6682.338873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.064 3.936 3 N -0.559 5.559 4 C 0.214 3.786 5 C -0.520 4.520 6 H 0.054 0.946 7 C 0.011 3.989 8 N -0.928 5.928 9 Si 0.961 3.039 10 H -0.275 1.275 11 H -0.281 1.281 12 H -0.268 1.268 13 C 0.298 3.702 14 N -0.348 5.348 15 N -0.311 5.311 16 C 0.057 3.943 17 C -0.197 4.197 18 Cl -0.031 7.031 19 C 0.134 3.866 20 C -0.126 4.126 21 C -0.133 4.133 22 C -0.167 4.167 23 H 0.063 0.937 24 H 0.078 0.922 25 H 0.042 0.958 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.002 0.998 29 H -0.001 1.001 30 H 0.265 0.735 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.213 0.787 34 H 0.130 0.870 35 H 0.097 0.903 36 H 0.125 0.875 37 H 0.120 0.880 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.698 -8.281 -17.872 19.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.064 4.064 3 N -0.284 5.284 4 C 0.088 3.912 5 C -0.559 4.559 6 H 0.072 0.928 7 C -0.188 4.188 8 N -0.569 5.569 9 Si 0.786 3.214 10 H -0.201 1.201 11 H -0.207 1.207 12 H -0.193 1.193 13 C 0.088 3.912 14 N -0.130 5.130 15 N -0.131 5.131 16 C -0.130 4.130 17 C -0.235 4.235 18 Cl -0.003 7.003 19 C 0.005 3.995 20 C -0.146 4.146 21 C -0.170 4.170 22 C -0.204 4.204 23 H 0.082 0.918 24 H 0.097 0.903 25 H 0.061 0.939 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.020 0.980 29 H 0.017 0.983 30 H 0.074 0.926 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.230 0.770 34 H 0.148 0.852 35 H 0.115 0.885 36 H 0.143 0.857 37 H 0.138 0.862 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.102 -7.237 -16.820 18.343 hybrid contribution -0.375 -0.549 0.508 0.836 sum -1.477 -7.785 -16.312 18.134 Atomic orbital electron populations 1.22274 0.96821 1.02839 1.01574 1.21984 0.94058 0.89253 1.01079 1.61915 1.60962 1.03644 1.01912 1.19380 0.92863 0.91882 0.87080 1.21282 1.27298 1.16208 0.91088 0.92786 1.25728 0.95282 0.95276 1.02523 1.70041 1.34627 1.24504 1.27682 0.85558 0.78522 0.78662 0.78616 1.20084 1.20674 1.19261 1.22072 0.90096 0.96758 0.82304 1.48642 1.10853 1.27853 1.25673 1.77548 0.92835 1.24408 1.18306 1.24289 1.00853 0.93484 0.94350 1.20487 0.96439 1.04312 1.02290 1.98286 1.98013 1.56760 1.47222 1.20245 0.96583 0.91279 0.91440 1.20650 0.88272 1.02482 1.03149 1.23098 1.01096 1.01733 0.91113 1.23155 0.96012 0.97769 1.03463 0.91817 0.90336 0.93866 0.91409 0.92389 0.98016 0.98344 0.92625 0.88915 0.89444 0.77025 0.85214 0.88450 0.85679 0.86216 0.89361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.53 8.98 71.98 0.65 -4.88 16 2 C 0.06 2.33 5.64 86.30 0.49 2.82 16 3 N -0.56 -23.53 4.82 -913.14 -4.40 -27.93 16 4 C 0.21 10.75 4.37 85.56 0.37 11.12 16 5 C -0.52 -28.76 8.58 25.60 0.22 -28.54 16 6 H 0.05 3.01 7.10 -2.91 -0.02 2.99 16 7 C 0.01 0.59 5.46 84.65 0.46 1.05 16 8 N -0.93 -53.94 13.29 21.45 0.28 -53.66 16 9 Si 0.96 43.86 29.54 68.60 2.03 45.89 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 13 C 0.30 10.56 5.95 170.80 1.02 11.57 16 14 N -0.35 -11.59 3.61 -344.04 -1.24 -12.83 16 15 N -0.31 -11.00 12.58 -56.97 -0.72 -11.71 16 16 C 0.06 1.61 12.02 85.25 1.02 2.63 16 17 C -0.20 -5.24 6.58 22.02 0.14 -5.09 16 18 Cl -0.03 -0.66 27.53 -2.72 -0.07 -0.74 16 19 C 0.13 3.73 5.43 41.40 0.22 3.96 16 20 C -0.13 -2.67 4.80 -11.54 -0.06 -2.73 16 21 C -0.13 -2.12 9.34 30.62 0.29 -1.83 16 22 C -0.17 -2.92 8.95 30.62 0.27 -2.64 16 23 H 0.06 1.73 5.86 -2.39 -0.01 1.72 16 24 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.04 1.66 6.43 -2.39 -0.02 1.64 16 26 H 0.07 2.24 5.01 -2.39 -0.01 2.23 16 27 H 0.06 2.39 7.01 -2.39 -0.02 2.37 16 28 H 0.00 0.10 7.86 -2.39 -0.02 0.08 16 29 H 0.00 -0.05 5.96 -2.38 -0.01 -0.07 16 30 H 0.26 14.59 8.31 -92.70 -0.77 13.82 16 31 H 0.09 2.83 4.76 -2.39 -0.01 2.82 16 32 H 0.09 3.29 7.80 -2.39 -0.02 3.27 16 33 H 0.21 4.46 8.06 -2.91 -0.02 4.44 16 34 H 0.13 2.72 6.89 -2.39 -0.02 2.70 16 35 H 0.10 1.66 7.38 -2.39 -0.02 1.64 16 36 H 0.13 1.45 8.14 -2.39 -0.02 1.44 16 37 H 0.12 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -63.73 319.76 2.05 -61.68 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 1.07 Total: 11.87 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: 5.10 Total: -12.57 kcal Atomic # 7 Polarization: -100.06 SS G_CDS: -6.07 Total: -106.13 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -0.07 Total: -0.74 kcal Total: -63.73 2.05 -61.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853492134.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.818 kcal (2) G-P(sol) polarization free energy of solvation -63.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds