Wall clock time and date at job start Tue Mar 31 2020 05:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42906 * 114.00193 * 2 1 4 4 C 1.52995 * 109.47143 * 179.97438 * 3 2 1 5 5 O 1.45199 * 109.47003 * 65.00167 * 4 3 2 6 6 C 1.34638 * 117.00029 * 179.97438 * 5 4 3 7 7 O 1.21520 * 119.99580 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00571 * 179.97438 * 6 5 4 9 9 C 1.46493 * 120.00646 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47443 * 270.00265 * 9 8 6 11 11 H 1.08001 * 120.00056 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00480 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99528 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00487 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46798 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47215 * 119.99681 * 14 12 10 17 17 H 1.48494 * 109.47431 * 240.00047 * 14 12 10 18 18 C 1.46505 * 119.99455 * 0.02562 * 8 6 5 19 19 C 1.50703 * 109.47064 * 90.00114 * 18 8 6 20 20 C 1.34515 * 125.79060 * 89.99944 * 19 18 8 21 21 C 1.41380 * 106.83832 * 179.97438 * 20 19 18 22 22 C 1.34506 * 106.84493 * 359.97438 * 21 20 19 23 23 O 1.34306 * 125.78568 * 269.69282 * 19 18 8 24 24 H 1.09009 * 109.47146 * 300.00025 * 1 2 3 25 25 H 1.08995 * 109.47423 * 59.99823 * 1 2 3 26 26 H 1.08997 * 109.47451 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46758 * 59.99604 * 3 2 1 28 28 H 1.09003 * 109.47201 * 300.00389 * 3 2 1 29 29 H 1.08998 * 109.47541 * 304.99493 * 4 3 2 30 30 H 1.09004 * 109.46741 * 184.99826 * 4 3 2 31 31 H 1.09006 * 109.46911 * 30.00087 * 9 8 6 32 32 H 1.08996 * 109.47170 * 149.99599 * 9 8 6 33 33 H 0.97003 * 119.99687 * 180.02562 * 13 12 10 34 34 H 1.09002 * 109.47068 * 210.00083 * 18 8 6 35 35 H 1.09001 * 109.47372 * 330.00170 * 18 8 6 36 36 H 1.07996 * 126.58016 * 0.03378 * 20 19 18 37 37 H 1.08006 * 126.57610 * 179.97438 * 21 20 19 38 38 H 1.08005 * 125.79499 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 8 3.9727 0.5695 -1.2398 6 6 5.2975 0.3902 -1.3993 7 8 6.0672 0.7378 -0.5256 8 7 5.7700 -0.1758 -2.5275 9 6 7.2115 -0.3704 -2.7014 10 6 7.8065 0.8460 -3.3626 11 1 7.1740 1.6805 -3.6272 12 6 9.1583 0.8938 -3.6296 13 7 9.9285 -0.1222 -3.3069 14 14 9.8958 2.4014 -4.4498 15 1 8.8253 3.3976 -4.7084 16 1 10.9217 2.9983 -3.5575 17 1 10.5265 2.0070 -5.7350 18 6 4.8419 -0.5954 -3.5806 19 6 4.6255 0.5440 -4.5429 20 6 5.3533 0.7901 -5.6471 21 6 4.8072 1.9476 -6.2479 22 6 3.7781 2.3392 -5.4753 23 8 3.6698 1.4827 -4.4465 24 1 -0.3634 0.5139 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.6885 1.8464 0.8900 28 1 1.6886 1.8465 -0.8900 29 1 3.8508 0.5686 0.8427 30 1 3.9784 2.1766 0.0902 31 1 7.6780 -0.5194 -1.7276 32 1 7.3871 -1.2461 -3.3262 33 1 10.8797 -0.0885 -3.4945 34 1 5.2606 -1.4480 -4.1153 35 1 3.8892 -0.8792 -3.1334 36 1 6.1929 0.2136 -6.0063 37 1 5.1504 2.4256 -7.1535 38 1 3.1439 3.1950 -5.6540 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884893849.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:34 Heat of formation + Delta-G solvation = -101.397576 kcal Electronic energy + Delta-G solvation = -22993.856385 eV Core-core repulsion = 19418.240490 eV Total energy + Delta-G solvation = -3575.615895 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.99518 -39.73764 -37.95728 -36.25195 -34.97813 -32.66402 -32.40442 -30.54767 -29.95887 -27.44750 -26.40975 -25.25441 -23.48226 -22.25390 -21.18458 -20.35107 -19.67074 -17.63453 -17.04367 -16.72078 -16.47249 -16.36802 -15.65675 -15.35017 -15.30376 -14.94881 -14.51481 -14.23380 -13.52192 -13.18418 -12.78104 -12.48376 -12.38706 -12.28978 -12.16001 -12.14844 -11.57478 -11.36676 -11.25484 -11.20895 -10.91945 -10.63926 -10.21477 -10.13911 -9.81663 -9.70759 -9.54799 -9.31380 -8.42980 -8.08247 -7.78022 -6.03549 -4.06074 2.17161 2.87616 3.23273 3.30997 3.38810 3.41168 3.45302 3.65278 3.77507 4.43813 4.61379 4.91565 5.12578 5.17878 5.20247 5.24636 5.29961 5.34335 5.44064 5.49415 5.55190 5.59758 5.74144 5.78127 5.93593 6.31661 6.52140 6.56982 6.65111 7.01648 7.03491 7.08594 7.40853 7.44535 7.69002 7.93957 8.21411 8.27546 8.93845 9.15593 9.58601 11.04960 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.016896 B = 0.005724 C = 0.004767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.783154 B = 4890.242016 C = 5872.491095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.064 3.936 4 C 0.089 3.911 5 O -0.367 6.367 6 C 0.644 3.356 7 O -0.567 6.567 8 N -0.574 5.574 9 C 0.257 3.743 10 C -0.518 4.518 11 H 0.061 0.939 12 C 0.062 3.938 13 N -0.896 5.896 14 Si 0.894 3.106 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.200 3.800 19 C -0.022 4.022 20 C -0.175 4.175 21 C -0.215 4.215 22 C -0.057 4.057 23 O -0.173 6.173 24 H 0.038 0.962 25 H 0.041 0.959 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.049 0.951 32 H 0.041 0.959 33 H 0.262 0.738 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.150 0.850 37 H 0.141 0.859 38 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.623 1.336 0.046 17.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.013 4.013 4 C 0.014 3.986 5 O -0.282 6.282 6 C 0.398 3.602 7 O -0.456 6.456 8 N -0.313 5.313 9 C 0.140 3.860 10 C -0.557 4.557 11 H 0.079 0.921 12 C -0.139 4.139 13 N -0.536 5.536 14 Si 0.722 3.278 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 C 0.076 3.924 19 C -0.074 4.074 20 C -0.195 4.195 21 C -0.234 4.234 22 C -0.125 4.125 23 O -0.069 6.069 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.103 0.897 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.126 0.874 35 H 0.107 0.893 36 H 0.168 0.832 37 H 0.158 0.842 38 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -17.315 1.226 0.612 17.369 hybrid contribution 0.579 1.443 -0.694 1.703 sum -16.736 2.669 -0.082 16.948 Atomic orbital electron populations 1.22730 0.81256 1.02750 0.99772 1.87986 1.19453 1.27385 1.95372 1.22632 0.91982 0.85492 1.01150 1.22800 0.92020 0.98692 0.85109 1.86276 1.24582 1.76362 1.40955 1.18139 0.80296 0.78181 0.83612 1.90960 1.57150 1.54779 1.42711 1.47368 1.09509 1.61023 1.13351 1.19469 0.70613 0.97213 0.98719 1.21467 0.93078 1.02445 1.38694 0.92109 1.24876 0.96827 0.96304 0.95908 1.69938 1.05436 1.30438 1.47744 0.86488 0.79146 0.83179 0.78964 1.19774 1.20999 1.20983 1.19795 0.94558 0.90844 0.87239 1.22956 0.91358 0.94299 0.98758 1.21610 1.01697 0.99393 0.96788 1.21792 0.99162 0.99591 1.02859 1.23824 1.02432 0.97065 0.89220 1.84011 1.46992 1.32863 1.43030 0.94311 0.94018 0.89662 0.91255 0.92049 0.90704 0.89962 0.93324 0.94071 0.92812 0.87384 0.89276 0.83219 0.84163 0.79012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.40 16 2 O -0.38 -5.06 10.67 -38.80 -0.41 -5.47 16 3 C 0.06 0.76 6.33 37.16 0.24 0.99 16 4 C 0.09 1.37 5.85 37.16 0.22 1.59 16 5 O -0.37 -7.06 9.02 -43.10 -0.39 -7.45 16 6 C 0.64 14.73 8.39 54.05 0.45 15.18 16 7 O -0.57 -14.82 15.71 -19.29 -0.30 -15.13 16 8 N -0.57 -12.78 2.44 -182.25 -0.44 -13.22 16 9 C 0.26 6.63 5.20 -5.20 -0.03 6.61 16 10 C -0.52 -14.48 9.13 -34.44 -0.31 -14.79 16 11 H 0.06 1.77 7.64 -52.49 -0.40 1.37 16 12 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 13 N -0.90 -26.22 13.29 55.43 0.74 -25.49 16 14 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 15 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 C 0.20 3.59 5.99 -5.19 -0.03 3.56 16 19 C -0.02 -0.42 6.90 -35.62 -0.25 -0.67 16 20 C -0.17 -3.25 10.39 -39.70 -0.41 -3.67 16 21 C -0.21 -3.54 10.91 -39.71 -0.43 -3.97 16 22 C -0.06 -0.88 12.09 29.41 0.36 -0.53 16 23 O -0.17 -3.13 10.65 5.68 0.06 -3.07 16 24 H 0.04 0.28 8.14 -51.92 -0.42 -0.14 16 25 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.05 1.41 7.42 -51.93 -0.39 1.02 16 32 H 0.04 1.04 7.89 -51.93 -0.41 0.63 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.11 1.69 7.89 -51.93 -0.41 1.28 16 35 H 0.09 1.44 7.37 -51.93 -0.38 1.06 16 36 H 0.15 2.80 8.06 -52.49 -0.42 2.37 16 37 H 0.14 1.98 8.06 -52.48 -0.42 1.55 16 38 H 0.19 2.11 8.06 -52.48 -0.42 1.69 16 LS Contribution 337.98 15.07 5.09 5.09 Total: -1.00 -34.55 337.98 -5.22 -39.77 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -5.35 Total: 0.57 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: 0.81 Total: 7.37 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.29 Total: -38.71 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -1.05 Total: -31.12 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.55 -5.22 -39.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884893849.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.628 kcal (2) G-P(sol) polarization free energy of solvation -34.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds