Wall clock time and date at job start Tue Mar 31 2020 05:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.47090 * 2 1 4 4 N 1.29946 * 126.28262 * 90.02882 * 3 2 1 5 5 O 1.21300 * 110.24653 * 179.97438 * 4 3 2 6 6 C 1.33639 * 109.81661 * 359.97438 * 5 4 3 7 7 C 1.50697 * 126.55487 * 179.97438 * 6 5 4 8 8 O 1.42896 * 109.47490 * 269.98168 * 7 6 5 9 9 C 1.42895 * 114.00495 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47635 * 179.97438 * 9 8 7 11 11 O 1.21281 * 119.99511 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00245 * 179.97438 * 10 9 8 13 13 C 1.46501 * 119.99750 * 0.02562 * 12 10 9 14 14 C 1.46495 * 119.99863 * 180.02562 * 12 10 9 15 15 C 1.50700 * 109.47084 * 90.00290 * 14 12 10 16 16 H 1.07998 * 119.99927 * 359.97438 * 15 14 12 17 17 C 1.37878 * 120.00151 * 179.97438 * 15 14 12 18 18 N 1.31513 * 120.00295 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99690 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47121 * 90.00064 * 19 17 15 21 21 H 1.48505 * 109.46650 * 209.99750 * 19 17 15 22 22 H 1.48495 * 109.47100 * 329.99519 * 19 17 15 23 23 N 1.31140 * 106.89456 * 359.77589 * 6 5 4 24 24 H 1.09002 * 109.47106 * 179.97438 * 1 2 3 25 25 H 1.09011 * 109.46854 * 299.99717 * 1 2 3 26 26 H 1.09005 * 109.47366 * 59.99142 * 1 2 3 27 27 H 1.08994 * 109.46812 * 240.00616 * 2 1 3 28 28 H 1.08997 * 109.47178 * 120.00239 * 2 1 3 29 29 H 1.08996 * 109.46950 * 29.98168 * 7 6 5 30 30 H 1.09001 * 109.47200 * 149.97819 * 7 6 5 31 31 H 1.09007 * 109.47069 * 300.00138 * 9 8 7 32 32 H 1.09010 * 109.47032 * 59.99564 * 9 8 7 33 33 H 1.08999 * 109.46911 * 90.00202 * 13 12 10 34 34 H 1.08997 * 109.47244 * 209.99424 * 13 12 10 35 35 H 1.09002 * 109.47609 * 329.99757 * 13 12 10 36 36 H 1.09008 * 109.47090 * 209.99851 * 14 12 10 37 37 H 1.08991 * 109.47436 * 330.00305 * 14 12 10 38 38 H 0.96999 * 120.00189 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2892 2.1457 1.0475 5 8 2.6781 3.2447 0.7124 6 6 2.7077 3.3277 -0.6211 7 6 3.1300 4.5223 -1.4368 8 8 1.9931 5.3486 -1.6954 9 6 2.2860 6.5157 -2.4661 10 6 1.0218 7.3083 -2.6778 11 8 -0.0266 6.9128 -2.2138 12 7 1.0566 8.4571 -3.3817 13 6 2.3232 8.9350 -3.9416 14 6 -0.1723 9.2277 -3.5870 15 6 -0.3387 10.2168 -2.4622 16 1 0.3970 10.2660 -1.6731 17 6 -1.4303 11.0588 -2.4404 18 7 -1.5753 11.9222 -1.4591 19 14 -2.7032 10.9731 -3.8049 20 1 -3.7605 9.9982 -3.4350 21 1 -3.3120 12.3137 -3.9987 22 1 -2.0491 10.5396 -5.0655 23 7 2.3032 2.1694 -1.0841 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5140 -0.8899 27 1 1.8932 -0.5137 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8763 5.0936 -0.8849 30 1 3.5563 4.1849 -2.3816 31 1 3.0147 7.1283 -1.9351 32 1 2.6951 6.2199 -3.4322 33 1 2.4529 8.5294 -4.9449 34 1 2.3118 10.0239 -3.9887 35 1 3.1473 8.6074 -3.3078 36 1 -0.1117 9.7625 -4.5349 37 1 -1.0266 8.5513 -3.6053 38 1 -2.3435 12.5144 -1.4436 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930593098.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:45 Heat of formation + Delta-G solvation = -1.646500 kcal Electronic energy + Delta-G solvation = -21617.811859 eV Core-core repulsion = 18078.814246 eV Total energy + Delta-G solvation = -3538.997613 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.77928 -39.39934 -37.75243 -36.55616 -34.96476 -34.05913 -32.58667 -31.88946 -29.65819 -28.23377 -26.70995 -25.69317 -25.32670 -23.39826 -22.27470 -21.37799 -18.86157 -18.35041 -17.75714 -17.04188 -16.96424 -16.49023 -16.27709 -15.48754 -15.10450 -14.95853 -14.57252 -14.27599 -13.94824 -13.32139 -13.07528 -12.98992 -12.59092 -12.39529 -12.22603 -12.05910 -12.04185 -11.98843 -11.62291 -11.54527 -11.49080 -11.19145 -10.95514 -10.54399 -10.20950 -10.18486 -9.99869 -9.56476 -9.06271 -8.60281 -7.78731 -6.10057 -4.09420 0.82929 1.93400 2.45277 3.16055 3.23142 3.29050 3.34645 3.36915 3.45045 3.77999 4.19731 4.38609 4.55169 4.69388 4.82827 4.86751 4.92487 4.94545 5.06279 5.11122 5.21200 5.23846 5.45353 5.51108 5.53498 5.62739 5.76094 5.77013 5.88897 6.07801 6.54017 6.74012 6.91594 7.25978 7.58166 7.95025 8.12958 8.44227 8.86581 8.93806 9.49628 11.03275 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.023735 B = 0.003151 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.421222 B = 8882.646587 C = 9369.344653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.031 4.031 3 C 0.169 3.831 4 N -0.379 5.379 5 O 0.089 5.911 6 C 0.190 3.810 7 C 0.154 3.846 8 O -0.354 6.354 9 C 0.048 3.952 10 C 0.507 3.493 11 O -0.517 6.517 12 N -0.596 5.596 13 C 0.080 3.920 14 C 0.217 3.783 15 C -0.531 4.531 16 H 0.075 0.925 17 C 0.072 3.928 18 N -0.897 5.897 19 Si 0.877 3.123 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.266 1.266 23 N -0.462 5.462 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.048 0.952 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.033 0.967 37 H 0.038 0.962 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.488 -18.526 -2.682 23.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.070 4.070 3 C -0.104 4.104 4 N -0.085 5.085 5 O 0.029 5.971 6 C -0.032 4.032 7 C 0.076 3.924 8 O -0.271 6.271 9 C -0.031 4.031 10 C 0.292 3.708 11 O -0.392 6.392 12 N -0.330 5.330 13 C -0.064 4.064 14 C 0.097 3.903 15 C -0.570 4.570 16 H 0.093 0.907 17 C -0.130 4.130 18 N -0.535 5.535 19 Si 0.704 3.296 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.190 1.190 23 N -0.197 5.197 24 H 0.090 0.910 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.115 0.885 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.399 -19.204 -1.795 22.929 hybrid contribution -0.352 0.467 -0.693 0.907 sum 12.047 -18.737 -2.489 22.414 Atomic orbital electron populations 1.21760 0.93101 1.02817 1.03122 1.19941 0.97018 0.85416 1.04590 1.25932 1.00522 1.00568 0.83402 1.74643 1.17034 0.92905 1.23923 1.85312 1.60108 1.27074 1.24594 1.28193 0.96687 0.96144 0.82135 1.20580 0.89057 0.85623 0.97171 1.88092 1.30134 1.35108 1.73779 1.22431 0.97685 0.86822 0.96199 1.19821 0.89586 0.81661 0.79750 1.90725 1.31933 1.68856 1.47697 1.47772 1.10518 1.22051 1.52709 1.21721 0.85440 1.01837 0.97363 1.19696 0.82261 0.91149 0.97219 1.21322 1.09689 1.17300 1.08677 0.90703 1.24861 0.97457 0.94884 0.95806 1.69893 1.29887 1.22051 1.31660 0.86842 0.82440 0.77625 0.82731 1.19855 1.21038 1.19027 1.71882 1.16237 1.02189 1.29439 0.90996 0.92182 0.91717 0.88549 0.89076 0.88923 0.88169 0.89762 0.90074 0.93365 0.90201 0.92220 0.94930 0.94448 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.89 37.16 0.37 -0.91 16 2 C -0.03 -0.27 6.56 -27.88 -0.18 -0.45 16 3 C 0.17 2.14 7.47 -156.37 -1.17 0.97 16 4 N -0.38 -5.29 12.16 30.90 0.38 -4.92 16 5 O 0.09 1.22 11.31 18.11 0.20 1.43 16 6 C 0.19 2.40 8.14 -13.05 -0.11 2.30 16 7 C 0.15 1.51 6.56 36.00 0.24 1.75 16 8 O -0.35 -5.32 9.86 -55.14 -0.54 -5.86 16 9 C 0.05 0.64 4.97 36.01 0.18 0.82 16 10 C 0.51 10.21 7.75 -10.99 -0.09 10.13 16 11 O -0.52 -13.29 16.08 -14.35 -0.23 -13.52 16 12 N -0.60 -11.82 2.86 -182.96 -0.52 -12.34 16 13 C 0.08 1.09 10.24 59.85 0.61 1.71 16 14 C 0.22 5.24 4.23 -5.20 -0.02 5.22 16 15 C -0.53 -15.19 9.94 -34.44 -0.34 -15.53 16 16 H 0.07 2.34 8.06 -52.49 -0.42 1.91 16 17 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 18 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 19 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 20 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 23 N -0.46 -6.26 11.55 -9.87 -0.11 -6.37 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.88 7.40 -51.93 -0.38 0.49 16 32 H 0.08 0.77 8.11 -51.92 -0.42 0.35 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.08 1.15 8.07 -51.93 -0.42 0.73 16 35 H 0.06 0.62 6.44 -51.93 -0.33 0.28 16 36 H 0.03 0.74 7.13 -51.92 -0.37 0.37 16 37 H 0.04 0.97 6.85 -51.93 -0.36 0.62 16 38 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 332.72 15.07 5.01 5.01 Total: -1.00 -38.07 332.72 -5.58 -43.65 By element: Atomic # 1 Polarization: 0.23 SS G_CDS: -5.26 Total: -5.03 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: -0.61 Total: 8.01 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: 0.51 Total: -50.52 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.57 Total: -17.96 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -38.07 -5.58 -43.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930593098.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.005 kcal (2) G-P(sol) polarization free energy of solvation -38.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds