Wall clock time and date at job start Tue Mar 31 2020 05:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.48210 * 2 1 4 4 C 1.53234 * 109.48004 * 239.95698 * 2 1 3 5 5 C 1.51266 * 108.53719 * 294.64921 * 4 2 1 6 6 O 1.20756 * 120.84885 * 128.63198 * 5 4 2 7 7 C 1.51268 * 118.29720 * 308.65168 * 5 4 2 8 8 C 1.53227 * 108.53981 * 51.35073 * 7 5 4 9 9 C 1.52958 * 109.40251 * 305.36768 * 8 7 5 10 10 H 1.08997 * 109.35984 * 303.53007 * 9 8 7 11 11 C 1.50700 * 109.41357 * 183.70082 * 9 8 7 12 12 O 1.20829 * 120.00495 * 239.64817 * 11 9 8 13 13 O 1.34227 * 119.99875 * 59.65037 * 11 9 8 14 14 C 1.45195 * 117.00234 * 179.97438 * 13 11 9 15 15 C 1.50702 * 109.47182 * 179.97438 * 14 13 11 16 16 O 1.21293 * 120.00255 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99928 * 179.72352 * 15 14 13 18 18 C 1.37101 * 120.00327 * 180.27606 * 17 15 14 19 19 H 1.08001 * 119.99426 * 0.02562 * 18 17 15 20 20 C 1.38942 * 120.00412 * 180.02562 * 18 17 15 21 21 N 1.31414 * 120.00005 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00057 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47191 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46534 * 120.00189 * 22 20 18 25 25 H 1.48498 * 109.47283 * 240.00132 * 22 20 18 26 26 H 1.09001 * 109.46864 * 299.97500 * 1 2 3 27 27 H 1.08993 * 109.47038 * 59.97083 * 1 2 3 28 28 H 1.09003 * 109.47191 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.62351 * 54.36408 * 4 2 1 30 30 H 1.09004 * 109.62260 * 174.92985 * 4 2 1 31 31 H 1.09001 * 109.62457 * 171.06191 * 7 5 4 32 32 H 1.08997 * 109.63022 * 291.63249 * 7 5 4 33 33 H 1.09000 * 109.48428 * 185.39290 * 8 7 5 34 34 H 1.09003 * 109.48308 * 65.35105 * 8 7 5 35 35 H 1.09004 * 109.47055 * 60.00127 * 14 13 11 36 36 H 1.09000 * 109.47653 * 300.00333 * 14 13 11 37 37 H 0.97000 * 120.00317 * 0.28382 * 17 15 14 38 38 H 0.96996 * 120.00330 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0410 -0.7233 -1.2505 5 6 1.6375 -2.1785 -1.1631 6 8 1.0639 -2.7181 -2.0785 7 6 1.9704 -2.9402 0.1007 8 6 1.4620 -2.1367 1.3022 9 6 2.0402 -0.7216 1.2485 10 1 3.1283 -0.7769 1.2157 11 6 1.6141 0.0405 2.4767 12 8 0.9690 1.0560 2.3642 13 8 1.9512 -0.4087 3.6959 14 6 1.5073 0.3765 4.8337 15 6 1.9751 -0.2774 6.1084 16 8 2.6196 -1.3039 6.0624 17 7 1.6824 0.2817 7.2993 18 6 2.1127 -0.3101 8.4587 19 1 2.6866 -1.2240 8.4177 20 6 1.8106 0.2660 9.6865 21 7 1.1118 1.3779 9.7364 22 14 2.3964 -0.5407 11.2662 23 1 3.1572 -1.7735 10.9399 24 1 3.2742 0.4008 12.0067 25 1 1.2239 -0.8903 12.1078 26 1 -0.3633 0.5135 0.8902 27 1 -0.3633 0.5143 -0.8897 28 1 -0.3634 -1.0277 -0.0005 29 1 1.5991 -0.2736 -2.1398 30 1 3.1273 -0.6467 -1.2995 31 1 1.4832 -3.9151 0.0796 32 1 3.0501 -3.0691 0.1768 33 1 1.7776 -2.6235 2.2250 34 1 0.3736 -2.0861 1.2714 35 1 0.4188 0.4335 4.8333 36 1 1.9238 1.3815 4.7665 37 1 1.1672 1.1027 7.3362 38 1 0.9006 1.7799 10.5935 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116400045.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:13 Heat of formation + Delta-G solvation = -175.204679 kcal Electronic energy + Delta-G solvation = -22168.516265 eV Core-core repulsion = 18589.699854 eV Total energy + Delta-G solvation = -3578.816411 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.11899 -39.83934 -38.27299 -37.14333 -35.99342 -34.03414 -32.40621 -31.41516 -30.11713 -28.41876 -27.42486 -24.67698 -23.46244 -22.42192 -20.59434 -19.62171 -18.70791 -18.09710 -17.65669 -16.80596 -16.46018 -15.97189 -15.63588 -15.46245 -15.19830 -14.63426 -14.39623 -14.30362 -13.97995 -13.84107 -13.26084 -13.05319 -12.74877 -12.37185 -12.22538 -12.09653 -11.95514 -11.77287 -11.64875 -11.38174 -11.17175 -11.13366 -10.82939 -10.44124 -10.41422 -10.34251 -10.17135 -9.66815 -9.64482 -8.55573 -8.11304 -6.52893 -3.95033 1.65556 2.22484 2.64023 3.09588 3.22061 3.29324 3.70469 3.78075 4.07338 4.14593 4.30222 4.45225 4.59098 4.78673 4.80624 4.90035 4.99591 5.05218 5.12148 5.23033 5.26146 5.37910 5.46191 5.51183 5.63510 5.65692 5.68767 5.75988 5.82322 5.98844 6.03582 6.15241 6.62424 7.18934 7.45257 7.79528 7.93103 8.45272 9.04339 9.36361 9.85941 10.64372 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.041435 B = 0.003057 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.592956 B = 9155.856316 C = 9606.838319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.069 4.069 3 H 0.094 0.906 4 C -0.165 4.165 5 C 0.362 3.638 6 O -0.459 6.459 7 C -0.167 4.167 8 C -0.113 4.113 9 C -0.080 4.080 10 H 0.116 0.884 11 C 0.463 3.537 12 O -0.508 6.508 13 O -0.323 6.323 14 C 0.060 3.940 15 C 0.438 3.562 16 O -0.576 6.576 17 N -0.553 5.553 18 C -0.302 4.302 19 H 0.107 0.893 20 C 0.025 3.975 21 N -0.897 5.897 22 Si 0.933 3.067 23 H -0.266 1.266 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.082 0.918 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.395 0.605 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.862 -1.671 -17.892 17.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.087 4.087 3 H 0.112 0.888 4 C -0.203 4.203 5 C 0.238 3.762 6 O -0.333 6.333 7 C -0.205 4.205 8 C -0.150 4.150 9 C -0.099 4.099 10 H 0.134 0.866 11 C 0.306 3.694 12 O -0.397 6.397 13 O -0.238 6.238 14 C -0.017 4.017 15 C 0.223 3.777 16 O -0.460 6.460 17 N -0.190 5.190 18 C -0.431 4.431 19 H 0.125 0.875 20 C -0.178 4.178 21 N -0.537 5.537 22 Si 0.760 3.240 23 H -0.191 1.191 24 H -0.206 1.206 25 H -0.206 1.206 26 H 0.101 0.899 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.113 0.887 30 H 0.120 0.880 31 H 0.113 0.887 32 H 0.123 0.877 33 H 0.116 0.884 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.228 0.772 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.730 -2.237 -18.228 18.380 hybrid contribution -0.086 0.494 1.020 1.136 sum 0.644 -1.744 -17.209 17.309 Atomic orbital electron populations 1.22150 0.94086 1.02041 1.03878 1.20955 0.97285 0.99855 0.90614 0.88773 1.22411 1.03522 0.94366 0.99999 1.24918 0.73950 0.90341 0.87002 1.90413 1.31448 1.71637 1.39755 1.22318 1.04222 1.00269 0.93704 1.21609 1.01788 0.92481 0.99136 1.21141 1.03469 0.95544 0.89738 0.86583 1.23545 0.76812 0.83838 0.85248 1.90622 1.36856 1.24940 1.87266 1.86542 1.70704 1.52413 1.14104 1.22755 1.00450 0.94666 0.83875 1.19323 0.86785 0.87705 0.83927 1.90561 1.43557 1.25336 1.86576 1.41721 1.48390 1.24810 1.04081 1.19776 1.32188 1.08936 0.82237 0.87548 1.25315 0.96693 0.96065 0.99687 1.69619 1.38222 1.18699 1.27201 0.85746 0.78455 0.79209 0.80627 1.19065 1.20611 1.20605 0.89931 0.92210 0.92864 0.88715 0.87960 0.88665 0.87721 0.88352 0.90311 0.89587 0.89546 0.77172 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 8.31 37.16 0.31 -1.31 16 2 C -0.07 -0.59 2.33 -90.52 -0.21 -0.80 16 3 H 0.09 0.81 8.00 -51.93 -0.42 0.39 16 4 C -0.17 -1.18 5.65 -27.48 -0.16 -1.34 16 5 C 0.36 3.32 5.75 -28.48 -0.16 3.15 16 6 O -0.46 -5.84 17.89 6.00 0.11 -5.73 16 7 C -0.17 -1.28 6.17 -27.49 -0.17 -1.45 16 8 C -0.11 -1.03 4.90 -26.64 -0.13 -1.16 16 9 C -0.08 -0.77 2.30 -91.81 -0.21 -0.98 16 10 H 0.12 0.90 8.14 -51.93 -0.42 0.47 16 11 C 0.46 6.45 6.97 36.01 0.25 6.70 16 12 O -0.51 -7.86 13.63 -18.75 -0.26 -8.11 16 13 O -0.32 -5.53 9.57 -45.90 -0.44 -5.97 16 14 C 0.06 1.09 5.94 36.01 0.21 1.30 16 15 C 0.44 10.23 7.86 -10.98 -0.09 10.14 16 16 O -0.58 -15.52 16.08 -14.11 -0.23 -15.75 16 17 N -0.55 -13.67 5.29 -10.96 -0.06 -13.73 16 18 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 16 19 H 0.11 3.02 7.16 -52.49 -0.38 2.64 16 20 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 21 N -0.90 -23.74 13.05 55.50 0.72 -23.02 16 22 Si 0.93 20.39 29.55 -169.99 -5.02 15.37 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 24 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 26 H 0.08 0.98 5.84 -51.93 -0.30 0.67 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.52 5.61 -51.93 -0.29 0.23 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.10 0.99 8.02 -51.93 -0.42 0.57 16 34 H 0.08 0.75 6.20 -51.93 -0.32 0.43 16 35 H 0.09 1.42 8.13 -51.93 -0.42 1.00 16 36 H 0.09 1.43 8.13 -51.93 -0.42 1.01 16 37 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 38 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 319.87 15.07 4.82 4.82 Total: -1.00 -32.67 319.87 -5.91 -38.58 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -4.96 Total: 7.09 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -0.59 Total: 6.46 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.67 Total: -36.75 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -0.81 Total: -35.57 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.67 -5.91 -38.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116400045.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.625 kcal (2) G-P(sol) polarization free energy of solvation -32.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds