Wall clock time and date at job start Tue Mar 31 2020 05:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00140 * 2 1 4 4 C 1.50697 * 109.46965 * 180.02562 * 3 2 1 5 5 N 1.29951 * 126.28736 * 270.02377 * 4 3 2 6 6 O 1.21303 * 110.24791 * 179.68636 * 5 4 3 7 7 C 1.33641 * 109.81336 * 0.46578 * 6 5 4 8 8 C 1.50701 * 126.55052 * 179.79760 * 7 6 5 9 9 N 1.46900 * 109.47223 * 269.69574 * 8 7 6 10 10 C 1.47443 * 111.00227 * 69.87126 * 9 8 7 11 11 C 1.54312 * 107.23612 * 236.74273 * 10 9 8 12 12 C 1.55142 * 103.17714 * 337.62814 * 11 10 9 13 13 O 1.42900 * 110.99267 * 277.64922 * 12 11 10 14 14 C 1.50700 * 110.99048 * 153.83199 * 12 11 10 15 15 H 1.08004 * 119.99851 * 241.45911 * 14 12 11 16 16 C 1.37875 * 120.00057 * 61.45406 * 14 12 11 17 17 N 1.31517 * 120.00100 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 120.00140 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47203 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47134 * 120.00042 * 18 16 14 21 21 H 1.48499 * 109.47287 * 240.00397 * 18 16 14 22 22 C 1.47844 * 110.99982 * 309.02970 * 9 8 7 23 23 N 1.31131 * 106.89837 * 359.54367 * 7 6 5 24 24 H 1.09001 * 109.46873 * 299.99858 * 1 2 3 25 25 H 1.08998 * 109.47375 * 59.99528 * 1 2 3 26 26 H 1.08997 * 109.47094 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46987 * 60.00656 * 3 2 1 28 28 H 1.09000 * 109.47402 * 300.00607 * 3 2 1 29 29 H 1.08999 * 109.47013 * 149.69549 * 8 7 6 30 30 H 1.08994 * 109.47127 * 29.69375 * 8 7 6 31 31 H 1.08997 * 109.88254 * 117.33308 * 10 9 8 32 32 H 1.09001 * 110.02167 * 356.22840 * 10 9 8 33 33 H 1.09002 * 110.70596 * 96.10119 * 11 10 9 34 34 H 1.09005 * 110.70742 * 219.16269 * 11 10 9 35 35 H 0.96696 * 113.99925 * 298.54409 * 13 12 11 36 36 H 0.96993 * 120.00152 * 179.97438 * 17 16 14 37 37 H 1.08999 * 110.37744 * 265.19940 * 22 9 8 38 38 H 1.09008 * 110.37208 * 27.53592 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2796 1.1250 1.0465 6 8 5.4411 1.0268 0.7109 7 6 5.5288 1.0262 -0.6227 8 6 6.7916 0.9261 -1.4390 9 7 7.3117 2.2742 -1.7036 10 6 7.8350 2.8903 -0.4705 11 6 7.0811 4.2215 -0.2689 12 6 6.5790 4.5633 -1.6965 13 8 7.6061 5.1958 -2.4627 14 6 5.3421 5.4225 -1.6425 15 1 4.4160 5.0631 -2.0665 16 6 5.3926 6.6672 -1.0517 17 7 6.5204 7.1050 -0.5358 18 14 3.8596 7.7326 -0.9853 19 1 2.7305 7.0161 -1.6312 20 1 3.5175 8.0200 0.4309 21 1 4.1119 9.0082 -1.7024 22 6 6.2567 3.1501 -2.2563 23 7 4.3056 1.1237 -1.0851 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6887 1.8463 0.8901 28 1 1.6886 1.8464 -0.8899 29 1 6.5748 0.4283 -2.3841 30 1 7.5359 0.3513 -0.8880 31 1 8.9029 3.0811 -0.5758 32 1 7.6583 2.2315 0.3798 33 1 6.2415 4.0894 0.4136 34 1 7.7560 4.9950 0.0976 35 1 7.9111 6.0359 -2.0937 36 1 6.5561 7.9808 -0.1205 37 1 6.2994 3.1550 -3.3455 38 1 5.2744 2.8223 -1.9158 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118134364.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:14 Heat of formation + Delta-G solvation = -6.656393 kcal Electronic energy + Delta-G solvation = -23425.600688 eV Core-core repulsion = 19886.385830 eV Total energy + Delta-G solvation = -3539.214858 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.40214 -38.69129 -38.15364 -35.67277 -35.01308 -32.54935 -32.17177 -30.00656 -28.69960 -28.17367 -26.37045 -26.05241 -24.36585 -23.30927 -21.50784 -20.15979 -19.58884 -18.10683 -17.38865 -17.04513 -16.47021 -16.10072 -15.59487 -15.44065 -14.93711 -14.80577 -14.48520 -13.78956 -13.48261 -12.95411 -12.79582 -12.65801 -12.25672 -12.05865 -11.96327 -11.70013 -11.39849 -11.27861 -11.15121 -11.01419 -10.85477 -10.74877 -10.44699 -10.39334 -9.97727 -9.95071 -9.80877 -9.25635 -8.65155 -8.16204 -8.02595 -6.25667 -4.33296 1.31755 2.25174 3.01730 3.16930 3.25797 3.29580 3.40632 4.01063 4.24522 4.27106 4.48477 4.92591 5.01663 5.03191 5.15382 5.16842 5.21596 5.43293 5.47643 5.54990 5.63631 5.81607 5.89668 5.96613 6.11530 6.17012 6.39552 6.56107 6.79144 6.80895 6.96671 7.28784 7.40859 7.42054 7.45122 7.77028 8.10677 8.33638 8.69195 9.35074 9.46522 10.81571 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.014148 B = 0.006692 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.541653 B = 4183.286969 C = 5588.597516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.387 6.387 3 C 0.157 3.843 4 C 0.167 3.833 5 N -0.369 5.369 6 O 0.083 5.917 7 C 0.160 3.840 8 C 0.137 3.863 9 N -0.502 5.502 10 C 0.031 3.969 11 C -0.144 4.144 12 C 0.253 3.747 13 O -0.578 6.578 14 C -0.534 4.534 15 H 0.060 0.940 16 C 0.072 3.928 17 N -0.894 5.894 18 Si 0.897 3.103 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.280 1.280 22 C 0.041 3.959 23 N -0.462 5.462 24 H 0.045 0.955 25 H 0.047 0.953 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.118 0.882 30 H 0.107 0.893 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.050 0.950 34 H 0.081 0.919 35 H 0.378 0.622 36 H 0.266 0.734 37 H 0.077 0.923 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.700 -11.368 1.781 12.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.304 6.304 3 C 0.080 3.920 4 C -0.106 4.106 5 N -0.077 5.077 6 O 0.022 5.978 7 C -0.063 4.063 8 C 0.005 3.995 9 N -0.225 5.225 10 C -0.096 4.096 11 C -0.183 4.183 12 C 0.213 3.787 13 O -0.386 6.386 14 C -0.572 4.572 15 H 0.078 0.922 16 C -0.130 4.130 17 N -0.533 5.533 18 Si 0.724 3.276 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.206 1.206 22 C -0.086 4.086 23 N -0.197 5.197 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.108 0.892 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.136 0.864 30 H 0.125 0.875 31 H 0.095 0.905 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.227 0.773 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.846 -11.923 1.637 12.974 hybrid contribution -1.510 1.508 1.128 2.414 sum -6.356 -10.415 2.765 12.511 Atomic orbital electron populations 1.22788 0.79918 1.03122 1.00492 1.87906 1.20394 1.26549 1.95589 1.20370 0.82862 0.85704 1.03113 1.25198 0.98887 1.02399 0.84077 1.74547 0.89839 1.19251 1.24056 1.85295 1.22397 1.64698 1.25369 1.30430 0.98377 0.95458 0.82048 1.21620 0.85278 0.95537 0.97042 1.64063 1.31449 1.00883 1.26083 1.23045 1.00490 0.96775 0.89297 1.23251 0.99224 0.94732 1.01098 1.19610 0.86261 0.87608 0.85249 1.86139 1.57593 1.40266 1.54604 1.21521 0.96107 1.01514 1.38069 0.92182 1.24982 0.96492 0.97563 0.93988 1.69733 1.25437 1.19592 1.38543 0.86461 0.83024 0.80357 0.77742 1.19675 1.20920 1.20603 1.23483 0.92269 0.92593 1.00246 1.71894 0.99854 1.18838 1.29068 0.93677 0.93451 0.89229 0.90319 0.89560 0.86377 0.87521 0.90496 0.93636 0.93070 0.90052 0.77322 0.92386 0.90468 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.39 -5.41 10.69 -35.23 -0.38 -5.79 16 3 C 0.16 2.27 6.56 36.00 0.24 2.51 16 4 C 0.17 2.99 7.85 -156.37 -1.23 1.76 16 5 N -0.37 -6.81 12.16 30.90 0.38 -6.44 16 6 O 0.08 1.46 10.77 18.11 0.20 1.66 16 7 C 0.16 2.69 6.02 -13.05 -0.08 2.61 16 8 C 0.14 1.96 5.91 -4.98 -0.03 1.93 16 9 N -0.50 -9.12 5.41 -232.38 -1.26 -10.37 16 10 C 0.03 0.58 6.46 -2.84 -0.02 0.56 16 11 C -0.14 -3.29 5.36 -24.91 -0.13 -3.42 16 12 C 0.25 6.24 0.88 -89.38 -0.08 6.16 16 13 O -0.58 -14.88 13.16 -35.23 -0.46 -15.34 16 14 C -0.53 -14.38 8.28 -34.44 -0.29 -14.66 16 15 H 0.06 1.64 7.79 -52.48 -0.41 1.23 16 16 C 0.07 1.92 5.29 -17.82 -0.09 1.82 16 17 N -0.89 -23.77 10.75 55.43 0.60 -23.18 16 18 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 C 0.04 0.88 5.68 -2.04 -0.01 0.87 16 23 N -0.46 -8.43 10.02 -9.86 -0.10 -8.53 16 24 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.12 1.48 8.14 -51.93 -0.42 1.06 16 30 H 0.11 1.18 8.04 -51.93 -0.42 0.76 16 31 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.05 0.76 6.78 -51.93 -0.35 0.41 16 33 H 0.05 1.25 8.03 -51.93 -0.42 0.83 16 34 H 0.08 1.97 7.53 -51.93 -0.39 1.58 16 35 H 0.38 9.78 7.56 45.56 0.34 10.12 16 36 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 37 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 38 H 0.07 1.50 4.92 -51.92 -0.26 1.24 16 LS Contribution 317.24 15.07 4.78 4.78 Total: -1.00 -30.27 317.24 -6.29 -36.57 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -4.41 Total: 9.33 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -0.61 Total: 1.55 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: -0.39 Total: -48.51 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.65 Total: -19.47 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.27 -6.29 -36.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118134364.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.912 kcal (2) G-P(sol) polarization free energy of solvation -30.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds