Wall clock time and date at job start Tue Mar 31 2020 05:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00140 * 2 1 4 4 C 1.50697 * 109.46965 * 180.02562 * 3 2 1 5 5 N 1.29951 * 126.28736 * 270.02377 * 4 3 2 6 6 O 1.21303 * 110.24791 * 179.68636 * 5 4 3 7 7 C 1.33641 * 109.81336 * 0.46578 * 6 5 4 8 8 C 1.50701 * 126.55052 * 179.79760 * 7 6 5 9 9 N 1.46900 * 109.47223 * 269.69574 * 8 7 6 10 10 C 1.47443 * 111.00227 * 69.87126 * 9 8 7 11 11 C 1.54312 * 107.23612 * 236.74273 * 10 9 8 12 12 C 1.55142 * 103.17714 * 337.62814 * 11 10 9 13 13 O 1.42900 * 110.99267 * 277.64922 * 12 11 10 14 14 C 1.50700 * 110.99048 * 153.83199 * 12 11 10 15 15 H 1.08004 * 119.99851 * 241.45911 * 14 12 11 16 16 C 1.37875 * 120.00057 * 61.45406 * 14 12 11 17 17 N 1.31517 * 120.00100 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 120.00140 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47203 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47134 * 120.00042 * 18 16 14 21 21 H 1.48499 * 109.47287 * 240.00397 * 18 16 14 22 22 C 1.47844 * 110.99982 * 309.02970 * 9 8 7 23 23 N 1.31131 * 106.89837 * 359.54367 * 7 6 5 24 24 H 1.09001 * 109.46873 * 299.99858 * 1 2 3 25 25 H 1.08998 * 109.47375 * 59.99528 * 1 2 3 26 26 H 1.08997 * 109.47094 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46987 * 60.00656 * 3 2 1 28 28 H 1.09000 * 109.47402 * 300.00607 * 3 2 1 29 29 H 1.08999 * 109.47013 * 149.69549 * 8 7 6 30 30 H 1.08994 * 109.47127 * 29.69375 * 8 7 6 31 31 H 1.08997 * 109.88254 * 117.33308 * 10 9 8 32 32 H 1.09001 * 110.02167 * 356.22840 * 10 9 8 33 33 H 1.09002 * 110.70596 * 96.10119 * 11 10 9 34 34 H 1.09005 * 110.70742 * 219.16269 * 11 10 9 35 35 H 0.96696 * 113.99925 * 298.54409 * 13 12 11 36 36 H 0.96993 * 120.00152 * 179.97438 * 17 16 14 37 37 H 1.08999 * 110.37744 * 265.19940 * 22 9 8 38 38 H 1.09008 * 110.37208 * 27.53592 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2796 1.1250 1.0465 6 8 5.4411 1.0268 0.7109 7 6 5.5288 1.0262 -0.6227 8 6 6.7916 0.9261 -1.4390 9 7 7.3117 2.2742 -1.7036 10 6 7.8350 2.8903 -0.4705 11 6 7.0811 4.2215 -0.2689 12 6 6.5790 4.5633 -1.6965 13 8 7.6061 5.1958 -2.4627 14 6 5.3421 5.4225 -1.6425 15 1 4.4160 5.0631 -2.0665 16 6 5.3926 6.6672 -1.0517 17 7 6.5204 7.1050 -0.5358 18 14 3.8596 7.7326 -0.9853 19 1 2.7305 7.0161 -1.6312 20 1 3.5175 8.0200 0.4309 21 1 4.1119 9.0082 -1.7024 22 6 6.2567 3.1501 -2.2563 23 7 4.3056 1.1237 -1.0851 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6887 1.8463 0.8901 28 1 1.6886 1.8464 -0.8899 29 1 6.5748 0.4283 -2.3841 30 1 7.5359 0.3513 -0.8880 31 1 8.9029 3.0811 -0.5758 32 1 7.6583 2.2315 0.3798 33 1 6.2415 4.0894 0.4136 34 1 7.7560 4.9950 0.0976 35 1 7.9111 6.0359 -2.0937 36 1 6.5561 7.9808 -0.1205 37 1 6.2994 3.1550 -3.3455 38 1 5.2744 2.8223 -1.9158 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118134364.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:14 Heat of formation + Delta-G solvation = -32.569832 kcal Electronic energy + Delta-G solvation = -23426.724379 eV Core-core repulsion = 19886.385830 eV Total energy + Delta-G solvation = -3540.338549 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -46.74633 -40.31975 -39.15831 -37.16445 -36.60020 -34.23320 -33.97546 -31.59116 -30.01584 -29.67935 -27.95683 -26.94701 -26.15260 -24.64795 -22.88096 -21.80210 -21.30077 -19.52263 -18.97145 -18.69067 -17.46970 -17.35116 -16.95776 -16.79969 -16.65930 -16.33940 -16.03720 -15.45797 -14.88984 -14.55057 -14.11881 -13.85668 -13.71684 -13.45881 -13.37827 -13.23518 -13.04181 -12.84033 -12.73802 -12.50762 -12.35287 -12.28711 -12.25269 -12.13221 -11.74251 -11.22367 -11.10857 -10.91482 -10.65640 -10.12608 -9.55711 -8.27421 -6.42274 -0.00063 0.95873 1.31913 1.35632 1.45406 1.74894 2.27851 2.32092 2.78311 2.96624 3.05183 3.18367 3.75847 3.87294 3.93885 3.98839 4.14300 4.24410 4.39696 4.43420 4.45726 4.49065 4.52667 4.68860 4.76673 4.78236 4.82661 4.86148 5.04964 5.20299 5.42793 5.49481 5.70636 5.79544 5.90102 5.98640 6.14016 6.62171 7.01165 7.29120 7.42121 8.78007 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.014148 B = 0.006692 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.541653 B = 4183.286969 C = 5588.597516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.409 6.409 3 C 0.157 3.843 4 C 0.156 3.844 5 N -0.388 5.388 6 O 0.080 5.920 7 C 0.162 3.838 8 C 0.135 3.865 9 N -0.499 5.499 10 C 0.040 3.960 11 C -0.134 4.134 12 C 0.236 3.764 13 O -0.584 6.584 14 C -0.559 4.559 15 H 0.046 0.954 16 C 0.033 3.967 17 N -0.907 5.907 18 Si 0.951 3.049 19 H -0.272 1.272 20 H -0.279 1.279 21 H -0.274 1.274 22 C 0.051 3.949 23 N -0.483 5.483 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.106 0.894 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.141 0.859 30 H 0.149 0.851 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.026 0.974 34 H 0.061 0.939 35 H 0.373 0.627 36 H 0.269 0.731 37 H 0.069 0.931 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.973 -12.403 1.872 13.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.327 6.327 3 C 0.079 3.921 4 C -0.117 4.117 5 N -0.097 5.097 6 O 0.020 5.980 7 C -0.061 4.061 8 C 0.005 3.995 9 N -0.221 5.221 10 C -0.087 4.087 11 C -0.174 4.174 12 C 0.196 3.804 13 O -0.391 6.391 14 C -0.597 4.597 15 H 0.064 0.936 16 C -0.168 4.168 17 N -0.546 5.546 18 Si 0.777 3.223 19 H -0.197 1.197 20 H -0.205 1.205 21 H -0.199 1.199 22 C -0.077 4.077 23 N -0.218 5.218 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.125 0.875 27 H 0.109 0.891 28 H 0.111 0.889 29 H 0.159 0.841 30 H 0.167 0.833 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.045 0.955 34 H 0.080 0.920 35 H 0.221 0.779 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.115 -12.974 1.726 14.053 hybrid contribution -1.455 1.812 1.093 2.568 sum -6.570 -11.162 2.819 13.255 Atomic orbital electron populations 1.23064 0.77574 1.04681 1.01677 1.87867 1.22926 1.26166 1.95790 1.20477 0.81246 0.86338 1.03991 1.25849 1.00383 1.01672 0.83807 1.74522 0.90239 1.20240 1.24671 1.85257 1.22165 1.64805 1.25728 1.30885 0.98833 0.94439 0.81930 1.22026 0.85261 0.93679 0.98553 1.63971 1.30480 1.01854 1.25844 1.22988 1.00423 0.94899 0.90391 1.23010 0.98290 0.96711 0.99346 1.19825 0.85351 0.88744 0.86518 1.86129 1.57867 1.40049 1.55079 1.21747 0.96607 1.02666 1.38714 0.93595 1.25625 0.99037 0.98501 0.93633 1.69804 1.26553 1.19849 1.38417 0.85613 0.80024 0.78882 0.77801 1.19672 1.20468 1.19950 1.23244 0.93012 0.91602 0.99795 1.71894 1.00645 1.19597 1.29626 0.92363 0.92383 0.87528 0.89120 0.88940 0.84145 0.83289 0.89322 0.91238 0.95466 0.91983 0.77904 0.92146 0.91210 0.91881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.41 -11.02 10.69 -148.98 -1.59 -12.61 16 3 C 0.16 4.44 6.56 71.23 0.47 4.91 16 4 C 0.16 5.49 7.85 138.46 1.09 6.58 16 5 N -0.39 -14.09 12.16 -60.30 -0.73 -14.83 16 6 O 0.08 2.71 10.77 74.85 0.81 3.52 16 7 C 0.16 5.18 6.02 88.38 0.53 5.72 16 8 C 0.14 3.45 5.91 85.56 0.51 3.96 16 9 N -0.50 -17.05 5.41 -889.11 -4.81 -21.87 16 10 C 0.04 1.42 6.46 86.64 0.56 1.98 16 11 C -0.13 -6.15 5.36 31.77 0.17 -5.98 16 12 C 0.24 11.70 0.88 -9.99 -0.01 11.69 16 13 O -0.58 -30.29 13.16 -148.98 -1.96 -32.25 16 14 C -0.56 -30.58 8.28 25.60 0.21 -30.37 16 15 H 0.05 2.57 7.79 -2.91 -0.02 2.55 16 16 C 0.03 1.77 5.29 84.65 0.45 2.22 16 17 N -0.91 -48.63 10.75 21.45 0.23 -48.40 16 18 Si 0.95 42.67 29.54 68.60 2.03 44.69 16 19 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 20 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 22 C 0.05 2.17 5.68 86.94 0.49 2.66 16 23 N -0.48 -17.23 10.02 -303.18 -3.04 -20.27 16 24 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 26 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.14 3.03 8.14 -2.39 -0.02 3.01 16 30 H 0.15 2.60 8.04 -2.39 -0.02 2.58 16 31 H 0.09 2.96 8.14 -2.39 -0.02 2.95 16 32 H 0.07 2.13 6.78 -2.39 -0.02 2.11 16 33 H 0.03 1.33 8.03 -2.39 -0.02 1.31 16 34 H 0.06 3.03 7.53 -2.38 -0.02 3.02 16 35 H 0.37 19.64 7.56 -74.06 -0.56 19.08 16 36 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 37 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 38 H 0.06 2.76 4.92 -2.38 -0.01 2.75 16 Total: -1.00 -65.38 317.24 -2.83 -68.21 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: 0.53 Total: 28.77 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: 5.72 Total: 5.02 kcal Atomic # 7 Polarization: -97.00 SS G_CDS: -8.35 Total: -105.36 kcal Atomic # 8 Polarization: -38.59 SS G_CDS: -2.75 Total: -41.34 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Total: -65.38 -2.83 -68.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118134364.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.642 kcal (2) G-P(sol) polarization free energy of solvation -65.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds