Wall clock time and date at job start Tue Mar 31 2020 05:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46508 * 120.00369 * 2 1 4 4 C 1.53000 * 109.47091 * 270.00427 * 3 2 1 5 5 F 1.39897 * 109.46742 * 299.99468 * 4 3 2 6 6 F 1.39902 * 109.47254 * 59.99793 * 4 3 2 7 7 C 1.34773 * 120.00094 * 180.02562 * 2 1 3 8 8 O 1.21286 * 120.00285 * 173.93170 * 7 2 1 9 9 C 1.50700 * 119.99856 * 353.92834 * 7 2 1 10 10 H 1.08996 * 109.47260 * 326.15479 * 9 7 2 11 11 C 1.50707 * 109.46999 * 86.15679 * 9 7 2 12 12 H 1.07998 * 119.99581 * 235.37351 * 11 9 7 13 13 C 1.37875 * 119.99903 * 55.37509 * 11 9 7 14 14 N 1.31509 * 120.00157 * 11.55319 * 13 11 9 15 15 Si 1.86802 * 119.99793 * 191.55678 * 13 11 9 16 16 H 1.48499 * 109.47040 * 89.99573 * 15 13 11 17 17 H 1.48493 * 109.47270 * 210.00205 * 15 13 11 18 18 H 1.48503 * 109.46986 * 330.00099 * 15 13 11 19 19 C 1.50703 * 109.47141 * 206.15616 * 9 7 2 20 20 C 1.38231 * 120.00183 * 44.26256 * 19 9 7 21 21 C 1.38236 * 120.00080 * 180.02562 * 20 19 9 22 22 C 1.38233 * 119.99968 * 359.95465 * 21 20 19 23 23 C 1.38235 * 119.99909 * 0.02562 * 22 21 20 24 24 C 1.38232 * 120.00149 * 0.06966 * 23 22 21 25 25 H 1.08996 * 109.46821 * 271.19275 * 1 2 3 26 26 H 1.09000 * 109.46715 * 31.18731 * 1 2 3 27 27 H 1.08992 * 109.47039 * 151.18723 * 1 2 3 28 28 H 1.09004 * 109.46889 * 29.99898 * 3 2 1 29 29 H 1.09000 * 109.47210 * 149.99851 * 3 2 1 30 30 H 1.09000 * 109.46695 * 179.97438 * 4 3 2 31 31 H 0.97000 * 120.00011 * 179.97438 * 14 13 11 32 32 H 1.08002 * 119.99968 * 359.97438 * 20 19 9 33 33 H 1.08000 * 119.99879 * 179.97438 * 21 20 19 34 34 H 1.08002 * 120.00172 * 179.72544 * 22 21 20 35 35 H 1.08000 * 119.99847 * 179.97438 * 23 22 21 36 36 H 1.08000 * 119.99907 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 9 3.2086 0.7355 -2.1020 6 9 1.2301 1.8778 -2.1020 7 6 2.1389 -1.1672 -0.0005 8 8 3.3466 -1.1701 -0.1116 9 6 1.3917 -2.4687 0.1369 10 1 0.5269 -2.3245 0.7845 11 6 0.9305 -2.9291 -1.2220 12 1 -0.1151 -3.1357 -1.3959 13 6 1.8436 -3.0865 -2.2430 14 7 3.1324 -3.0584 -1.9828 15 14 1.2499 -3.3395 -3.9960 16 1 1.1035 -2.0214 -4.6641 17 1 2.2366 -4.1641 -4.7386 18 1 -0.0625 -4.0341 -3.9787 19 6 2.3014 -3.5091 0.7379 20 6 3.1030 -3.1862 1.8167 21 6 3.9378 -4.1405 2.3676 22 6 3.9703 -5.4178 1.8402 23 6 3.1683 -5.7408 0.7615 24 6 2.3350 -4.7860 0.2094 25 1 -0.3633 0.0214 1.0274 26 1 -0.3633 0.8792 -0.5322 27 1 -0.3633 -0.9004 -0.4952 28 1 1.6085 2.0284 0.5138 29 1 3.1500 1.1384 0.5138 30 1 2.9972 2.6546 -1.4424 31 1 3.7747 -3.1695 -2.7011 32 1 3.0778 -2.1882 2.2287 33 1 4.5645 -3.8881 3.2102 34 1 4.6258 -6.1621 2.2677 35 1 3.1940 -6.7386 0.3492 36 1 1.7087 -5.0383 -0.6335 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001125960788.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:54 Heat of formation + Delta-G solvation = -101.535770 kcal Electronic energy + Delta-G solvation = -23573.158028 eV Core-core repulsion = 19886.448624 eV Total energy + Delta-G solvation = -3686.709403 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.32685 -46.32082 -39.07127 -37.55327 -34.57395 -33.52716 -30.93761 -29.69566 -29.65410 -27.12709 -25.70971 -23.93626 -22.57237 -21.25866 -20.31424 -18.44356 -17.08702 -16.97768 -16.52982 -15.96153 -15.69947 -15.42326 -14.68889 -14.59283 -13.79330 -13.68972 -13.46837 -13.26866 -12.69764 -12.59891 -12.38523 -12.21305 -12.11227 -11.92941 -11.81180 -11.63075 -11.52353 -11.20827 -10.91916 -10.71394 -10.65168 -10.29993 -10.02429 -9.64374 -9.34143 -8.49807 -8.28275 -7.83147 -7.68801 -7.35316 -5.98821 -4.16555 2.56536 2.64717 3.30177 3.37787 3.39718 3.77222 4.05094 4.34280 4.43256 4.73139 4.89198 5.03154 5.22005 5.26088 5.71508 5.78167 5.85859 5.87384 5.96457 6.05876 6.07969 6.32195 6.46398 6.51416 6.67506 6.74682 6.88407 7.16201 7.23466 7.33622 7.55613 7.68856 7.78034 7.86539 8.19553 8.29952 8.39940 8.82719 9.48152 9.62857 10.96941 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.016043 B = 0.008504 C = 0.006583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.874433 B = 3291.925258 C = 4252.487177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.632 5.632 3 C 0.073 3.927 4 C 0.242 3.758 5 F -0.185 7.185 6 F -0.211 7.211 7 C 0.531 3.469 8 O -0.501 6.501 9 C 0.066 3.934 10 H 0.051 0.949 11 C -0.549 4.549 12 H 0.066 0.934 13 C 0.078 3.922 14 N -0.812 5.812 15 Si 0.878 3.122 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.272 1.272 19 C -0.006 4.006 20 C -0.117 4.117 21 C -0.140 4.140 22 C -0.147 4.147 23 C -0.144 4.144 24 C -0.055 4.055 25 H 0.039 0.961 26 H 0.057 0.943 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.263 0.737 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.079 6.318 5.451 8.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.370 5.370 3 C -0.052 4.052 4 C 0.186 3.814 5 F -0.166 7.166 6 F -0.193 7.193 7 C 0.321 3.679 8 O -0.372 6.372 9 C 0.044 3.956 10 H 0.069 0.931 11 C -0.586 4.586 12 H 0.085 0.915 13 C -0.133 4.133 14 N -0.442 5.442 15 Si 0.706 3.294 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.007 4.007 20 C -0.135 4.135 21 C -0.158 4.158 22 C -0.165 4.165 23 C -0.162 4.162 24 C -0.073 4.073 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.073 0.927 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.174 6.235 5.287 8.459 hybrid contribution -0.110 0.119 -1.414 1.423 sum -2.284 6.354 3.873 7.784 Atomic orbital electron populations 1.21764 0.80010 1.03949 1.00151 1.47960 1.06635 1.04526 1.77871 1.22308 1.00529 0.88920 0.93471 1.22478 0.77712 0.91037 0.90164 1.93112 1.75426 1.65488 1.82557 1.92931 1.46857 1.96084 1.83400 1.21542 0.88037 0.84409 0.73920 1.90620 1.14534 1.86072 1.46021 1.17880 0.92609 0.87767 0.97295 0.93083 1.20496 0.94368 1.50274 0.93442 0.91539 1.25023 0.94898 0.94675 0.98694 1.70183 1.00062 1.41953 1.31975 0.86801 0.78705 0.78267 0.85672 1.20545 1.21240 1.19727 1.19867 0.94914 0.94666 0.91213 1.20836 0.97618 0.97621 0.97450 1.20748 1.00369 0.94056 1.00650 1.20743 1.00862 0.96316 0.98560 1.20999 0.98819 0.98930 0.97443 1.21072 0.96819 0.92286 0.97139 0.94207 0.92468 0.89039 0.89088 0.88048 0.88390 0.92702 0.88454 0.88220 0.88249 0.88053 0.85415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.37 9.60 59.85 0.57 1.95 16 2 N -0.63 -12.20 2.79 -181.57 -0.51 -12.70 16 3 C 0.07 1.15 5.69 -4.04 -0.02 1.13 16 4 C 0.24 3.96 5.60 37.16 0.21 4.17 16 5 F -0.18 -4.14 16.01 2.25 0.04 -4.10 16 6 F -0.21 -3.71 16.22 2.25 0.04 -3.67 16 7 C 0.53 12.47 5.06 -10.99 -0.06 12.41 16 8 O -0.50 -13.39 12.61 5.55 0.07 -13.32 16 9 C 0.07 1.55 1.96 -94.07 -0.18 1.37 16 10 H 0.05 1.10 7.11 -51.93 -0.37 0.73 16 11 C -0.55 -13.80 6.13 -34.44 -0.21 -14.02 16 12 H 0.07 1.63 7.84 -52.49 -0.41 1.22 16 13 C 0.08 2.06 4.22 -17.82 -0.08 1.99 16 14 N -0.81 -22.96 9.81 55.43 0.54 -22.41 16 15 Si 0.88 20.97 29.55 -169.99 -5.02 15.94 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 19 C -0.01 -0.13 4.27 -104.62 -0.45 -0.58 16 20 C -0.12 -2.62 8.48 -39.58 -0.34 -2.95 16 21 C -0.14 -2.85 10.05 -39.58 -0.40 -3.25 16 22 C -0.15 -2.90 10.05 -39.58 -0.40 -3.30 16 23 C -0.14 -3.02 10.05 -39.58 -0.40 -3.42 16 24 C -0.06 -1.30 7.98 -39.58 -0.32 -1.61 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.83 7.23 -51.93 -0.38 0.45 16 27 H 0.09 1.66 5.93 -51.93 -0.31 1.35 16 28 H 0.09 1.04 8.07 -51.93 -0.42 0.62 16 29 H 0.10 1.63 7.51 -51.93 -0.39 1.24 16 30 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.10 2.11 7.44 -52.49 -0.39 1.72 16 33 H 0.10 1.75 8.06 -52.49 -0.42 1.32 16 34 H 0.10 1.67 8.06 -52.49 -0.42 1.24 16 35 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 36 H 0.13 3.12 6.21 -52.49 -0.33 2.79 16 LS Contribution 303.58 15.07 4.57 4.57 Total: -1.00 -32.06 303.58 -6.57 -38.63 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -4.24 Total: 3.19 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -2.06 Total: -6.13 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: 0.04 Total: -35.12 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.07 Total: -13.32 kcal Atomic # 9 Polarization: -7.84 SS G_CDS: 0.07 Total: -7.77 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.06 -6.57 -38.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001125960788.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.906 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds