Wall clock time and date at job start Tue Mar 31 2020 05:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00052 * 2 1 4 4 C 1.53002 * 109.47124 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47070 * 184.99838 * 4 3 2 6 6 C 1.52997 * 109.46817 * 304.99658 * 4 3 2 7 7 O 1.42898 * 109.47113 * 64.99707 * 4 3 2 8 8 C 1.35992 * 117.00003 * 150.00388 * 7 4 3 9 9 C 1.40144 * 125.84004 * 179.71832 * 8 7 4 10 10 C 1.36068 * 107.82242 * 179.82877 * 9 8 7 11 11 N 1.39452 * 126.22133 * 180.15641 * 10 9 8 12 12 C 1.34780 * 119.99620 * 0.28895 * 11 10 9 13 13 O 1.21289 * 120.00371 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.99685 * 180.02562 * 12 11 10 15 15 C 1.50707 * 109.46862 * 180.02562 * 14 12 11 16 16 H 1.07998 * 119.99881 * 359.97438 * 15 14 12 17 17 C 1.37872 * 119.99703 * 180.02562 * 15 14 12 18 18 N 1.31515 * 120.00239 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99893 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46959 * 59.99916 * 19 17 15 21 21 H 1.48493 * 109.47279 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47109 * 300.00037 * 19 17 15 23 23 N 1.35811 * 107.55959 * 0.42195 * 10 9 8 24 24 H 0.97008 * 126.04563 * 179.76884 * 23 10 9 25 25 N 1.31115 * 125.83336 * 0.02562 * 8 7 4 26 26 H 1.09003 * 109.46956 * 299.99957 * 1 2 3 27 27 H 1.09002 * 109.47338 * 59.99567 * 1 2 3 28 28 H 1.08995 * 109.47337 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47584 * 59.99997 * 3 2 1 30 30 H 1.09008 * 109.46978 * 300.00105 * 3 2 1 31 31 H 1.08996 * 109.47853 * 300.00202 * 6 4 3 32 32 H 1.09002 * 109.47153 * 60.00231 * 6 4 3 33 33 H 1.08998 * 109.47533 * 179.97438 * 6 4 3 34 34 H 1.08000 * 126.08475 * 359.97438 * 9 8 7 35 35 H 0.96994 * 120.00556 * 180.29510 * 11 10 9 36 36 H 1.08996 * 109.47564 * 300.00166 * 14 12 11 37 37 H 1.08995 * 109.47026 * 60.00846 * 14 12 11 38 38 H 0.97008 * 119.99684 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9785 2.1765 0.0889 6 6 3.9789 0.3194 1.1807 7 8 3.9648 0.5796 -1.2219 8 6 5.1917 0.9347 -1.6889 9 6 5.7952 0.4538 -2.8588 10 6 7.0116 1.0521 -2.9761 11 7 7.9325 0.8522 -4.0041 12 6 7.6462 0.0011 -5.0092 13 8 6.5874 -0.5905 -5.0200 14 6 8.6416 -0.2154 -6.1197 15 6 8.0828 -1.2052 -7.1093 16 1 7.1048 -1.6348 -6.9497 17 6 8.8205 -1.5631 -8.2177 18 7 10.0115 -1.0403 -8.4118 19 14 8.1281 -2.7905 -9.4440 20 1 6.8613 -2.2626 -10.0112 21 1 9.1089 -3.0038 -10.5384 22 1 7.8634 -4.0804 -8.7575 23 7 7.1683 1.8749 -1.9071 24 1 7.9423 2.4298 -1.7225 25 7 6.0145 1.7814 -1.1186 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.6886 1.8464 0.8899 30 1 1.6885 1.8464 -0.8900 31 1 3.6514 0.7808 2.1123 32 1 3.5358 -0.6725 1.0912 33 1 5.0655 0.2329 1.1801 34 1 5.3694 -0.2623 -3.5460 35 1 8.7791 1.3254 -3.9957 36 1 8.8356 0.7314 -6.6236 37 1 9.5716 -0.6028 -5.7036 38 1 10.5304 -1.2919 -9.1919 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143189744.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:15 Heat of formation + Delta-G solvation = -39.798389 kcal Electronic energy + Delta-G solvation = -21644.562476 eV Core-core repulsion = 18103.910474 eV Total energy + Delta-G solvation = -3540.652003 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.25276 -39.28184 -38.55964 -37.39210 -34.25310 -33.07218 -32.49609 -30.15842 -29.76283 -28.14254 -27.55768 -25.92481 -24.05974 -22.72177 -21.46875 -20.46791 -19.44453 -18.66872 -17.20014 -16.59812 -16.41983 -15.90617 -15.72735 -15.54371 -15.44376 -14.84262 -14.58520 -14.25915 -13.83578 -13.58045 -13.22796 -12.97754 -12.90082 -12.51821 -12.19198 -12.15201 -11.82207 -11.48012 -11.15088 -11.01950 -10.89760 -10.72023 -10.38294 -10.24845 -10.01447 -9.90206 -9.41498 -8.92393 -8.51948 -8.47212 -7.84575 -6.15293 -4.16102 1.99688 2.49917 3.00272 3.04685 3.34561 3.36758 3.42863 3.54213 3.59677 3.91875 4.42366 4.57636 4.80924 4.90880 5.01784 5.14173 5.14226 5.19454 5.23733 5.37311 5.45590 5.49509 5.64518 5.79074 5.89201 6.14712 6.19559 6.35066 6.76675 6.91015 6.98698 7.12932 7.27558 7.60320 7.69742 7.87788 7.94680 8.17996 8.83817 8.94606 9.49789 10.96762 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.023514 B = 0.003162 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.491890 B = 8854.160713 C = 9868.298868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.378 6.378 3 C 0.064 3.936 4 C 0.088 3.912 5 H 0.092 0.908 6 C -0.166 4.166 7 O -0.273 6.273 8 C 0.281 3.719 9 C -0.291 4.291 10 C 0.348 3.652 11 N -0.664 5.664 12 C 0.519 3.481 13 O -0.500 6.500 14 C 0.013 3.987 15 C -0.514 4.514 16 H 0.078 0.922 17 C 0.057 3.943 18 N -0.900 5.900 19 Si 0.905 3.095 20 H -0.274 1.274 21 H -0.288 1.288 22 H -0.274 1.274 23 N -0.490 5.490 24 H 0.437 0.563 25 N -0.355 5.355 26 H 0.038 0.962 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.179 0.821 35 H 0.410 0.590 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.996 8.054 17.531 21.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.297 6.297 3 C -0.013 4.013 4 C 0.031 3.969 5 H 0.110 0.890 6 C -0.224 4.224 7 O -0.177 6.177 8 C 0.076 3.924 9 C -0.322 4.322 10 C 0.127 3.873 11 N -0.313 5.313 12 C 0.309 3.691 13 O -0.371 6.371 14 C -0.026 4.026 15 C -0.553 4.553 16 H 0.096 0.904 17 C -0.144 4.144 18 N -0.539 5.539 19 Si 0.732 3.268 20 H -0.200 1.200 21 H -0.213 1.213 22 H -0.200 1.200 23 N -0.210 5.210 24 H 0.281 0.719 25 N -0.197 5.197 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.196 0.804 35 H 0.245 0.755 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.627 7.906 18.155 22.473 hybrid contribution 0.432 -0.076 -1.017 1.107 sum -10.195 7.830 17.138 21.423 Atomic orbital electron populations 1.22751 0.81149 1.02917 0.99791 1.87983 1.19457 1.26909 1.95334 1.22673 0.91801 0.85733 1.01070 1.22410 0.92724 0.97934 0.83842 0.88989 1.22129 1.02121 1.01546 0.96568 1.86469 1.26974 1.64594 1.39636 1.20362 0.86079 0.93213 0.92715 1.20920 0.95329 1.13593 1.02405 1.18232 0.91508 0.92387 0.85209 1.43850 1.19104 1.46525 1.21835 1.22474 0.89612 0.75668 0.81318 1.90522 1.25578 1.45677 1.75331 1.19285 0.93235 0.99990 0.90102 1.21093 1.04130 1.24319 1.05740 0.90425 1.24993 0.94794 0.96610 0.97996 1.69938 1.11098 1.43828 1.29032 0.86431 0.78678 0.81483 0.80176 1.19989 1.21333 1.19967 1.45693 1.17188 1.39668 1.18476 0.71899 1.77255 0.95821 1.27676 1.18976 0.94301 0.93967 0.89511 0.91443 0.92260 0.91535 0.90757 0.91928 0.80380 0.75459 0.92769 0.92759 0.92665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.47 9.79 -40.09 -0.39 -4.86 16 3 C 0.06 0.65 5.81 37.16 0.22 0.87 16 4 C 0.09 1.07 3.02 -26.73 -0.08 0.99 16 5 H 0.09 1.06 7.29 -51.93 -0.38 0.68 16 6 C -0.17 -1.86 9.34 37.16 0.35 -1.51 16 7 O -0.27 -4.44 9.83 -24.57 -0.24 -4.68 16 8 C 0.28 4.84 7.83 -17.14 -0.13 4.71 16 9 C -0.29 -5.53 9.66 -39.65 -0.38 -5.92 16 10 C 0.35 5.78 8.10 -152.70 -1.24 4.54 16 11 N -0.66 -10.72 5.42 -11.35 -0.06 -10.78 16 12 C 0.52 10.98 7.79 -10.98 -0.09 10.89 16 13 O -0.50 -12.21 12.59 5.55 0.07 -12.14 16 14 C 0.01 0.31 5.46 -29.03 -0.16 0.15 16 15 C -0.51 -14.19 8.92 -34.44 -0.31 -14.49 16 16 H 0.08 2.23 6.75 -52.49 -0.35 1.87 16 17 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -25.32 13.29 55.43 0.74 -24.59 16 19 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 N -0.49 -6.69 7.39 31.24 0.23 -6.46 16 24 H 0.44 4.17 8.96 -182.62 -1.64 2.54 16 25 N -0.36 -5.50 11.60 30.53 0.35 -5.14 16 26 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.91 7.56 -51.93 -0.39 0.52 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.18 3.84 5.83 -52.49 -0.31 3.54 16 35 H 0.41 4.96 8.82 -40.82 -0.36 4.60 16 36 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 329.98 15.07 4.97 4.97 Total: -1.00 -33.23 329.98 -6.53 -39.76 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -6.37 Total: 4.35 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -0.81 Total: 3.08 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: 1.26 Total: -46.97 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.56 Total: -21.68 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.23 -6.53 -39.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189744.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.041 kcal (2) G-P(sol) polarization free energy of solvation -33.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds