Wall clock time and date at job start Tue Mar 31 2020 05:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42891 * 114.00391 * 2 1 4 4 C 1.52998 * 109.47242 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47476 * 174.99905 * 4 3 2 6 6 C 1.53003 * 109.46934 * 54.99970 * 4 3 2 7 7 O 1.42903 * 109.47279 * 295.00003 * 4 3 2 8 8 C 1.35983 * 116.99839 * 209.99697 * 7 4 3 9 9 C 1.40154 * 125.83492 * 179.97438 * 8 7 4 10 10 C 1.36065 * 107.82085 * 180.02562 * 9 8 7 11 11 N 1.39455 * 126.21649 * 179.97438 * 10 9 8 12 12 C 1.34777 * 120.00047 * 0.02562 * 11 10 9 13 13 O 1.21292 * 119.99984 * 359.97438 * 12 11 10 14 14 C 1.50706 * 119.99762 * 179.97438 * 12 11 10 15 15 C 1.50699 * 109.46817 * 179.97438 * 14 12 11 16 16 H 1.08003 * 119.99962 * 359.97438 * 15 14 12 17 17 C 1.37874 * 120.00270 * 180.02562 * 15 14 12 18 18 N 1.31522 * 119.99835 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00390 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46950 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47074 * 119.99834 * 19 17 15 22 22 H 1.48505 * 109.46997 * 239.99828 * 19 17 15 23 23 N 1.35812 * 107.56533 * 0.22774 * 10 9 8 24 24 H 0.96999 * 126.04421 * 179.77160 * 23 10 9 25 25 N 1.31106 * 125.84108 * 0.02562 * 8 7 4 26 26 H 1.08994 * 109.47377 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46642 * 300.00304 * 1 2 3 28 28 H 1.08999 * 109.46618 * 59.99600 * 1 2 3 29 29 H 1.09007 * 109.47340 * 60.00377 * 3 2 1 30 30 H 1.08994 * 109.47565 * 299.99876 * 3 2 1 31 31 H 1.09006 * 109.46922 * 180.02562 * 6 4 3 32 32 H 1.08997 * 109.46834 * 299.99702 * 6 4 3 33 33 H 1.08995 * 109.46988 * 60.00253 * 6 4 3 34 34 H 1.08004 * 126.08258 * 359.97438 * 9 8 7 35 35 H 0.96999 * 119.99906 * 179.97438 * 11 10 9 36 36 H 1.09000 * 109.47318 * 299.99141 * 14 12 11 37 37 H 1.09000 * 109.47161 * 59.99772 * 14 12 11 38 38 H 0.96992 * 120.00038 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.9787 2.1762 -0.0889 6 6 3.9790 0.3191 -1.1807 7 8 3.9649 0.5794 1.2220 8 6 5.1917 0.9346 1.6889 9 6 5.7927 0.4581 2.8620 10 6 7.0114 1.0523 2.9764 11 7 7.9320 0.8528 4.0048 12 6 7.6455 0.0020 5.0100 13 8 6.5868 -0.5898 5.0206 14 6 8.6407 -0.2140 6.1210 15 6 8.0818 -1.2036 7.1106 16 1 7.1036 -1.6328 6.9512 17 6 8.8186 -1.5602 8.2200 18 7 10.0096 -1.0371 8.4144 19 14 8.1261 -2.7875 9.4463 20 1 6.7786 -3.2251 9.0014 21 1 9.0268 -3.9651 9.5305 22 1 8.0221 -2.1473 10.7823 23 7 7.1660 1.8792 1.9102 24 1 7.9383 2.4371 1.7279 25 7 6.0142 1.7818 1.1192 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 1.6888 1.8463 0.8901 30 1 1.6888 1.8463 -0.8899 31 1 5.0656 0.2326 -1.1799 32 1 3.5359 -0.6727 -1.0910 33 1 3.6515 0.7806 -2.1122 34 1 5.3642 -0.2532 3.5525 35 1 8.7788 1.3258 3.9962 36 1 9.5709 -0.6013 5.7054 37 1 8.8342 0.7331 6.6246 38 1 10.5278 -1.2877 9.1950 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143189745.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:17 Heat of formation + Delta-G solvation = -39.830896 kcal Electronic energy + Delta-G solvation = -21645.012192 eV Core-core repulsion = 18104.358780 eV Total energy + Delta-G solvation = -3540.653412 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.136 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.25250 -39.28220 -38.55946 -37.39234 -34.25256 -33.07364 -32.49636 -30.15866 -29.76324 -28.14348 -27.55790 -25.92491 -24.06276 -22.72202 -21.46943 -20.46821 -19.44417 -18.66890 -17.19993 -16.60021 -16.42137 -15.90612 -15.72862 -15.54608 -15.44650 -14.83893 -14.58623 -14.25469 -13.83437 -13.58058 -13.22415 -12.97655 -12.89714 -12.51948 -12.21429 -12.15188 -11.82173 -11.48537 -11.15046 -11.02480 -10.85193 -10.76608 -10.37568 -10.24960 -10.01187 -9.90191 -9.37979 -8.92307 -8.53238 -8.47225 -7.84584 -6.15767 -4.16331 1.99716 2.49893 3.00385 3.04615 3.30082 3.37721 3.46739 3.54214 3.59661 3.91899 4.42401 4.57651 4.80894 4.90876 5.01815 5.14138 5.14250 5.19485 5.23436 5.37297 5.45609 5.49510 5.64491 5.79039 5.89181 6.14683 6.19538 6.35060 6.76691 6.91036 6.98610 7.12709 7.27561 7.60355 7.69753 7.87805 7.94639 8.17828 8.83866 8.95219 9.49711 10.96433 Molecular weight = 283.14amu Principal moments of inertia in cm(-1) A = 0.023513 B = 0.003162 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.522561 B = 8854.195869 C = 9868.263708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.378 6.378 3 C 0.064 3.936 4 C 0.088 3.912 5 H 0.092 0.908 6 C -0.166 4.166 7 O -0.273 6.273 8 C 0.281 3.719 9 C -0.291 4.291 10 C 0.348 3.652 11 N -0.664 5.664 12 C 0.519 3.481 13 O -0.500 6.500 14 C 0.012 3.988 15 C -0.513 4.513 16 H 0.079 0.921 17 C 0.057 3.943 18 N -0.900 5.900 19 Si 0.903 3.097 20 H -0.269 1.269 21 H -0.283 1.283 22 H -0.283 1.283 23 N -0.491 5.491 24 H 0.437 0.563 25 N -0.355 5.355 26 H 0.086 0.914 27 H 0.042 0.958 28 H 0.038 0.962 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.179 0.821 35 H 0.410 0.590 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.031 8.057 -17.555 21.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.297 6.297 3 C -0.013 4.013 4 C 0.031 3.969 5 H 0.110 0.890 6 C -0.224 4.224 7 O -0.177 6.177 8 C 0.076 3.924 9 C -0.322 4.322 10 C 0.127 3.873 11 N -0.313 5.313 12 C 0.309 3.691 13 O -0.371 6.371 14 C -0.027 4.027 15 C -0.551 4.551 16 H 0.097 0.903 17 C -0.145 4.145 18 N -0.539 5.539 19 Si 0.731 3.269 20 H -0.193 1.193 21 H -0.209 1.209 22 H -0.210 1.210 23 N -0.210 5.210 24 H 0.281 0.719 25 N -0.197 5.197 26 H 0.105 0.895 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.196 0.804 35 H 0.245 0.755 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.671 7.907 -18.184 22.518 hybrid contribution 0.463 -0.070 1.028 1.130 sum -10.208 7.836 -17.156 21.446 Atomic orbital electron populations 1.22753 0.81146 1.02918 0.99792 1.87982 1.19458 1.26909 1.95334 1.22669 0.91799 0.85736 1.01069 1.22411 0.92727 0.97934 0.83841 0.88988 1.22131 1.02119 1.01545 0.96569 1.86468 1.26950 1.64612 1.39640 1.20360 0.86082 0.93251 0.92670 1.20923 0.95190 1.13872 1.02264 1.18232 0.91476 0.92380 0.85247 1.43852 1.19110 1.46557 1.21798 1.22474 0.89608 0.75672 0.81326 1.90524 1.25572 1.45653 1.75342 1.19298 0.93253 1.00016 0.90123 1.21176 1.04152 1.24183 1.05589 0.90311 1.25000 0.94806 0.96630 0.98026 1.69955 1.11163 1.43876 1.28900 0.86334 0.79430 0.80658 0.80514 1.19300 1.20934 1.20951 1.45692 1.17399 1.39296 1.18645 0.71900 1.77253 0.95994 1.27597 1.18884 0.89509 0.93973 0.94292 0.92261 0.91444 0.91929 0.90755 0.91535 0.80378 0.75461 0.92748 0.92762 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.47 9.79 -40.08 -0.39 -4.86 16 3 C 0.06 0.65 5.81 37.16 0.22 0.87 16 4 C 0.09 1.07 3.02 -26.73 -0.08 0.99 16 5 H 0.09 1.06 7.29 -51.93 -0.38 0.68 16 6 C -0.17 -1.86 9.34 37.16 0.35 -1.51 16 7 O -0.27 -4.44 9.83 -24.54 -0.24 -4.68 16 8 C 0.28 4.85 7.83 -17.14 -0.13 4.71 16 9 C -0.29 -5.53 9.66 -39.64 -0.38 -5.92 16 10 C 0.35 5.78 8.10 -152.70 -1.24 4.54 16 11 N -0.66 -10.71 5.42 -11.35 -0.06 -10.77 16 12 C 0.52 10.97 7.79 -10.98 -0.09 10.89 16 13 O -0.50 -12.21 12.59 5.55 0.07 -12.14 16 14 C 0.01 0.29 5.46 -29.03 -0.16 0.13 16 15 C -0.51 -14.13 8.92 -34.44 -0.31 -14.43 16 16 H 0.08 2.27 6.75 -52.48 -0.35 1.92 16 17 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 18 N -0.90 -25.32 13.29 55.43 0.74 -24.58 16 19 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 N -0.49 -6.69 7.40 31.24 0.23 -6.46 16 24 H 0.44 4.17 8.96 -182.62 -1.64 2.54 16 25 N -0.36 -5.50 11.60 30.53 0.35 -5.14 16 26 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.91 7.56 -51.93 -0.39 0.52 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.18 3.84 5.83 -52.48 -0.31 3.54 16 35 H 0.41 4.95 8.82 -40.82 -0.36 4.59 16 36 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.05 1.27 8.14 -51.93 -0.42 0.84 16 38 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 329.98 15.07 4.97 4.97 Total: -1.00 -33.28 329.98 -6.53 -39.81 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -6.37 Total: 4.29 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -0.81 Total: 3.09 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: 1.26 Total: -46.96 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.56 Total: -21.67 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.28 -6.53 -39.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189745.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.018 kcal (2) G-P(sol) polarization free energy of solvation -33.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds